FvH4_1g00550

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
298504 .. 302072
3569 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00550.t3

Sequence Viewer

Length: 1413 bp
ATGTTCAAACCCAGATGGGCGTTTGTTCTCATATTCCTCCTCAATCTTCATCTGGGTAGTGTTTTTGCCACTGTTCCCACAGACCCACTTGTCCAACAGCAATTGGATAGAGTTCATGGGCTTCCGGGCCAGACCTTCAACGTGAGCTTTGCACACTATGCTGGGTACGTCAATGTCAATGAAGATGCCGGGAGGGCTCTCTTCTACTGGTTTGTTGAGGCTGCTGAGGACCCTACTTCTAAGCCCCTTGTTCTTTGGCTTAATGGAGGACCTGGATGTTCATCAATTGCTTATGGGATGGCAGAGGAAGTTGGCCCATTTCATATTCAGGCTGATGGGAAGACACTGTATTTGAATCCTTACTCTTGGAATCAAGTTGCTAACATTCTGTTTCTTGATTCACCTGTTGGAGTTGGGTTTTCTTATTCAAACACATCCTCTGATTTAATGTCCAATGGAGATAAAAGGACTGCGAGCGACTCCCTGGCATTTCTATTGAAGTGGCTTGAACGCTATCCCCAGTACAAAGGAAGGGACTTTTACATCACAGGAGAGAGCTATGCAGGACATTATGTTCCTCAGTTAAGCCAAGCAATTGTGAAGTACAACTTGGCAGCTAAGGAGAAAGGAATTAATCTGAAGGGCTATATGGTGGGAAATGCTCTAACAGATGATTACCATGATCACTTGGGGGTTTTCCAGTTTATGTGGTCAGCTGGTTTGATTTCTGATCAAACATACAAGGCGCTTAACCTTTTTTGTGACTTCCAGTCATTCATACACACCTCAAATTCATGTGACAGTATTCTTGACATTGCTAGTGCAGAACTTGGAAACATTGACCCTTACAGTATTTACACTCCGTCTTGCCCCGCTAATGTTAGCCAGTCAAATCGGCTGTTGAAACGAATGCATGTGGCTGGCCGAATCAATGAAAAGTATGATCCTTGCACTGAGAAACACACAGTTGTATACTTCAATCTACCTGAGGTTCAGAAGGCTCTTCATGTTGATCGACACCATGCACCATCTAAATGGGAAACCTGCAGTGATGTGGTGTACACTACTTGGAAGGATTCTCCTAGGACAGTGCTGGATGTCTACCGGGAGTTAATACATTCGGGACTTCGTATATGGATGTTCAGTGGTGATACAGATGCGGTAATCCCAGTTACATCTACCCGATACAGTATAGATTCCCTTAAGCTTCCAACTGTCAAACCTTGGCGTGCCTGGTATGATGAGGGGCAGGTTGGAGGCTGGACTCAAGAATATGCTGGGCTGACATTTGTATCAGTGAGGGGAGCAGGTCATGAAGTCCCTCTGCACAAACCAAAGCTAGCTCTCGCACTTATTAAAAACTTCTTGTCAGGATCCTCAATGCCATCATTACAACTTGTCAGTGACTCGTAG

Protein Analysis

471

Amino Acids

52.63

Weight (kDa)

6.14

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 42 - 381 1.2e-119 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012531)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
Acc36I ACCTGC 3 cut(s) 1052, 1240, 1298
AccI GTMKAC 2 cut(s) 972, 1101
AciI CCGC 2 cut(s) 873, 1160
AclWI GGATC 3 cut(s) 938, 1368, 1381
AcoI YGGCCR 1 cut(s) 922
AcsI RAATTY 1 cut(s) 790
AcuI CTGAAG 1 cut(s) 659
AfaI GTAC 4 cut(s) 167, 524, 605, 1061
AflII CTTAAG 1 cut(s) 1202
AgsI TTSAA 8 cut(s) 7, 139, 355, 429, 499, 509, 904, 979
AhdI GACNNNNNGTC 1 cut(s) 769
AjnI CCWGG 3 cut(s) 271, 483, 1232
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AloI GAACNNNNNNTCC 2 cut(s) 558, 590
AluBI AGCT 7 cut(s) 147, 558, 617, 716, 1207, 1339, 1343
AluI AGCT 7 cut(s) 147, 558, 617, 716, 1207, 1339, 1343
AlwI GGATC 3 cut(s) 938, 1368, 1381
AoxI GGCC 3 cut(s) 127, 313, 922
ApeKI GCWGC 2 cut(s) 221, 614
ApoI RAATTY 1 cut(s) 790
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AseI ATTAAT 1 cut(s) 633
AspA2I CCTAGG 1 cut(s) 1082
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 4 cut(s) 127, 229, 269, 314
AsuC2I CCSGG 3 cut(s) 126, 190, 1106
AsuHPI GGTGA 2 cut(s) 393, 1160
AsuNHI GCTAGC 1 cut(s) 1339
AvaII GGWCC 2 cut(s) 229, 269
AvrII CCTAGG 1 cut(s) 1082
AxyI CCTNAGG 1 cut(s) 987
BaeI ACNNNNGTAYC 2 cut(s) 1275, 1308
BamHI GGATCC 1 cut(s) 1373
BanII GRGCYC 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 347
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 208, 626
BccI CCATC 5 cut(s) 9, 292, 329, 1036, 1393
BciT130I CCWGG 3 cut(s) 273, 485, 1234
BclI TGATCA 2 cut(s) 682, 730
BcnI CCSGG 3 cut(s) 126, 190, 1106
BfaI CTAG 3 cut(s) 819, 1083, 1340
BfmI CTRYAG 1 cut(s) 1045
BfoI RGCGCY 1 cut(s) 749
BfrI CTTAAG 1 cut(s) 1202
BfuAI ACCTGC 3 cut(s) 1052, 1240, 1298
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 2 cut(s) 222, 615
BlnI CCTAGG 1 cut(s) 1082
BlsI GCNGC 2 cut(s) 223, 616
Bme1390I CCNGG 6 cut(s) 126, 190, 273, 485, 1106, 1234
Bme18I GGWCC 2 cut(s) 229, 269
BmeRI GACNNNNNGTC 1 cut(s) 769
BmgT120I GGNCC 4 cut(s) 127, 229, 269, 314
BmiI GGNNCC 2 cut(s) 231, 1375
BmrFI CCNGG 6 cut(s) 126, 190, 273, 485, 1106, 1234
BmrI ACTGGG 2 cut(s) 514, 1163
BmsI GCATC 2 cut(s) 175, 1147
BmtI GCTAGC 1 cut(s) 1343
BmuI ACTGGG 2 cut(s) 514, 1163
BpiI GAAGAC 1 cut(s) 347
Bpu10I CCTNAGC 2 cut(s) 225, 618
BpuEI CTTGAG 1 cut(s) 1251
BpuMI CCSGG 3 cut(s) 126, 190, 1106
BsaBI GATNNNNATC 1 cut(s) 280
BsaJI CCNNGG 3 cut(s) 483, 1082, 1223
Bse1I ACTGG 6 cut(s) 212, 520, 700, 769, 886, 1169
Bse21I CCTNAGG 1 cut(s) 987
Bse3DI GCAATG 1 cut(s) 813
Bse8I GATNNNNATC 1 cut(s) 280
BseBI CCWGG 3 cut(s) 273, 485, 1234
BseDI CCNNGG 3 cut(s) 483, 1082, 1223
BseGI GGATG 5 cut(s) 281, 303, 434, 1102, 1143
BseJI GATNNNNATC 1 cut(s) 280
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 4 cut(s) 216, 593, 945, 978
BseNI ACTGG 6 cut(s) 212, 520, 700, 769, 886, 1169
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 208, 626
BseYI CCCAGC 2 cut(s) 161, 1277
BsgI GTGCAG 2 cut(s) 843, 1310
BshFI GGCC 3 cut(s) 129, 315, 924
BsiSI CCGG 3 cut(s) 125, 189, 1105
BslFI GGGAC 3 cut(s) 548, 1137, 1304
BsmFI GGGAC 3 cut(s) 548, 1137, 1304
BsmI GAATGC 1 cut(s) 915
BsnI GGCC 3 cut(s) 129, 315, 924
Bsp1286I GDGCHC 1 cut(s) 199
Bsp1407I TGTACA 1 cut(s) 1059
Bsp143I GATC 5 cut(s) 682, 730, 943, 1012, 1373
BspACI CCGC 2 cut(s) 873, 1160
BspANI GGCC 3 cut(s) 129, 315, 924
BspCNI CTCAG 4 cut(s) 217, 592, 946, 979
BspHI TCATGA 1 cut(s) 1312
BspLI GGNNCC 2 cut(s) 231, 1375
BspMAI CTGCAG 1 cut(s) 1049
BspMI ACCTGC 3 cut(s) 1052, 1240, 1298
BspOI GCTAGC 1 cut(s) 1343
BspPI GGATC 3 cut(s) 938, 1368, 1381
BspQI GCTCTTC 1 cut(s) 1008
BspTI CTTAAG 1 cut(s) 1202
BsrDI GCAATG 1 cut(s) 813
BsrGI TGTACA 1 cut(s) 1059
BsrI ACTGG 6 cut(s) 212, 520, 700, 769, 886, 1169
BssECI CCNNGG 3 cut(s) 483, 1082, 1223
BssMI GATC 5 cut(s) 682, 730, 943, 1012, 1373
BssNAI GTATAC 1 cut(s) 973
BssT1I CCWWGG 2 cut(s) 1082, 1223
Bst1107I GTATAC 1 cut(s) 973
Bst2UI CCWGG 3 cut(s) 273, 485, 1234
Bst4CI ACNGT 8 cut(s) 73, 348, 803, 851, 967, 1090, 1190, 1216
Bst6I CTCTTC 2 cut(s) 206, 1008
BstAFI CTTAAG 1 cut(s) 1202
BstAPI GCANNNNNTGC 1 cut(s) 158
BstAUI TGTACA 1 cut(s) 1059
BstC8I GCNNGC 4 cut(s) 475, 922, 1230, 1341
BstDEI CTNAG 6 cut(s) 225, 240, 579, 618, 954, 987
BstF5I GGATG 5 cut(s) 281, 303, 434, 1102, 1143
BstH2I RGCGCY 1 cut(s) 749
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 5 cut(s) 685, 733, 946, 1015, 1376
BstMBI GATC 5 cut(s) 682, 730, 943, 1012, 1373
BstMWI GCNNNNNNNGC 2 cut(s) 158, 194
BstNI CCWGG 3 cut(s) 273, 485, 1234
BstNSI RCATGY 1 cut(s) 917
BstSCI CCNGG 6 cut(s) 124, 188, 271, 483, 1104, 1232
BstSFI CTRYAG 1 cut(s) 1045
BstV1I GCAGC 2 cut(s) 208, 626
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 1373
BstXI CCANNNNNNTGG 1 cut(s) 1035
BstYI RGATCY 1 cut(s) 1373
BstZ17I GTATAC 1 cut(s) 973
Bsu36I CCTNAGG 1 cut(s) 987
BsuRI GGCC 3 cut(s) 129, 315, 924
BtsCI GGATG 5 cut(s) 281, 303, 434, 1102, 1143
BtsI GCAGTG 1 cut(s) 1054
BtsIMutI CAGTG 8 cut(s) 69, 344, 951, 1054, 1095, 1150, 1302, 1408
BveI ACCTGC 3 cut(s) 1052, 1240, 1298
Cac8I GCNNGC 4 cut(s) 475, 922, 1230, 1341
CciI TCATGA 1 cut(s) 1312
CfoI GCGC 1 cut(s) 748
Cfr13I GGNCC 4 cut(s) 127, 229, 269, 314
Csp6I GTAC 4 cut(s) 166, 523, 604, 1060
CviAII CATG 7 cut(s) 116, 680, 795, 914, 1007, 1022, 1313
CviQI GTAC 4 cut(s) 166, 523, 604, 1060
DdeI CTNAG 6 cut(s) 225, 240, 579, 618, 954, 987
DpnI GATC 5 cut(s) 684, 732, 945, 1014, 1375
DpnII GATC 5 cut(s) 682, 730, 943, 1012, 1373
DrdI GACNNNNNNGTC 1 cut(s) 89
DriI GACNNNNNGTC 1 cut(s) 769
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 922
Eam1104I CTCTTC 2 cut(s) 206, 1008
Eam1105I GACNNNNNGTC 1 cut(s) 769
EarI CTCTTC 2 cut(s) 206, 1008
Eco130I CCWWGG 2 cut(s) 1082, 1223
Eco24I GRGCYC 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 229, 269
Eco57I CTGAAG 1 cut(s) 659
Eco81I CCTNAGG 1 cut(s) 987
EcoO109I RGGNCCY 2 cut(s) 229, 269
EcoRII CCWGG 3 cut(s) 271, 483, 1232
EcoT14I CCWWGG 2 cut(s) 1082, 1223
EcoT22I ATGCAT 1 cut(s) 915
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 2 cut(s) 1082, 1223
FaeI CATG 7 cut(s) 119, 683, 798, 917, 1010, 1025, 1316
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FaqI GGGAC 3 cut(s) 548, 1137, 1304
FatI CATG 7 cut(s) 115, 679, 794, 913, 1006, 1021, 1312
FauI CCCGC 1 cut(s) 880
FbaI TGATCA 2 cut(s) 682, 730
FblI GTMKAC 2 cut(s) 972, 1101
Fnu4HI GCNGC 2 cut(s) 222, 615
FokI GGATG 5 cut(s) 288, 310, 421, 1109, 1150
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 2 cut(s) 222, 615
FspBI CTAG 3 cut(s) 819, 1083, 1340
GlaI GCGC 1 cut(s) 747
GluI GCNGC 2 cut(s) 222, 615
GsaI CCCAGC 2 cut(s) 165, 1281
HaeII RGCGCY 1 cut(s) 749
HaeIII GGCC 3 cut(s) 129, 315, 924
HapII CCGG 3 cut(s) 125, 189, 1105
HhaI GCGC 1 cut(s) 748
Hin1II CATG 7 cut(s) 119, 683, 798, 917, 1010, 1025, 1316
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HindIII AAGCTT 1 cut(s) 1205
HinfI GANTC 9 cut(s) 355, 370, 398, 479, 927, 1076, 1196, 1264, 1406
HpaII CCGG 3 cut(s) 125, 189, 1105
HphI GGTGA 2 cut(s) 393, 1160
Hpy166II GTNNAC 4 cut(s) 973, 1060, 1062, 1102
Hpy188I TCNGA 4 cut(s) 442, 639, 730, 996
Hpy188III TCNNGA 6 cut(s) 395, 809, 1122, 1268, 1313, 1371
Hpy8I GTNNAC 4 cut(s) 973, 1060, 1062, 1102
HpyAV CCTTC 5 cut(s) 145, 525, 634, 991, 1066
HpyCH4III ACNGT 8 cut(s) 73, 348, 803, 851, 967, 1090, 1190, 1216
HpyCH4IV ACGT 2 cut(s) 141, 168
HpyCH4V TGCA 8 cut(s) 152, 563, 824, 913, 951, 1025, 1047, 1327
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 194
HpyF3I CTNAG 6 cut(s) 225, 240, 579, 618, 954, 987
HpySE526I ACGT 2 cut(s) 141, 168
Hsp92II CATG 7 cut(s) 119, 683, 798, 917, 1010, 1025, 1316
HspAI GCGC 1 cut(s) 746
Ksp22I TGATCA 2 cut(s) 682, 730
Kzo9I GATC 5 cut(s) 682, 730, 943, 1012, 1373
LguI GCTCTTC 1 cut(s) 1008
LmnI GCTCC 1 cut(s) 1304
Lsp1109I GCAGC 2 cut(s) 208, 626
LweI GCATC 2 cut(s) 175, 1147
MaeI CTAG 3 cut(s) 819, 1083, 1340
MaeII ACGT 2 cut(s) 141, 168
MaeIII GTNAC 4 cut(s) 761, 797, 1171, 1403
MalI GATC 5 cut(s) 684, 732, 945, 1014, 1375
MboI GATC 5 cut(s) 682, 730, 943, 1012, 1373
MboII GAAGA 5 cut(s) 38, 193, 194, 352, 995
MfeI CAATTG 3 cut(s) 101, 285, 594
MflI RGATCY 1 cut(s) 1373
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 5 cut(s) 101, 285, 594, 630, 790
MlyI GAGTC 3 cut(s) 473, 1258, 1400
MmeI TCCRAC 4 cut(s) 118, 388, 1234, 1235
Mph1103I ATGCAT 1 cut(s) 915
MseI TTAA 8 cut(s) 261, 446, 584, 633, 750, 1112, 1203, 1356
MslI CAYNNNNRTG 1 cut(s) 1033
MspA1I CMGCKG 1 cut(s) 716
MspCI CTTAAG 1 cut(s) 1202
MspI CCGG 3 cut(s) 125, 189, 1105
MspR9I CCNGG 6 cut(s) 126, 190, 273, 485, 1106, 1234
MunI CAATTG 3 cut(s) 101, 285, 594
Mva1269I GAATGC 1 cut(s) 915
MvaI CCWGG 3 cut(s) 273, 485, 1234
MwoI GCNNNNNNNGC 2 cut(s) 158, 194
NciI CCSGG 3 cut(s) 126, 190, 1106
NdeII GATC 5 cut(s) 682, 730, 943, 1012, 1373
NheI GCTAGC 1 cut(s) 1339
NlaIII CATG 7 cut(s) 119, 683, 798, 917, 1010, 1025, 1316
NlaIV GGNNCC 2 cut(s) 231, 1375
NmuCI GTSAC 3 cut(s) 761, 797, 1403
NsiI ATGCAT 1 cut(s) 915
NspI RCATGY 1 cut(s) 917
PagI TCATGA 1 cut(s) 1312
PciSI GCTCTTC 1 cut(s) 1008
PctI GAATGC 1 cut(s) 915
PfeI GAWTC 6 cut(s) 355, 370, 398, 927, 1076, 1196
PkrI GCNGC 2 cut(s) 223, 616
PleI GAGTC 3 cut(s) 473, 1258, 1400
PpsI GAGTC 3 cut(s) 473, 1258, 1400
PpuMI RGGWCCY 2 cut(s) 229, 269
PshBI ATTAAT 1 cut(s) 633
Psp5II RGGWCCY 2 cut(s) 229, 269
Psp6I CCWGG 3 cut(s) 271, 483, 1232
PspFI CCCAGC 2 cut(s) 161, 1277
PspGI CCWGG 3 cut(s) 271, 483, 1232
PspN4I GGNNCC 2 cut(s) 231, 1375
PspPI GGNCC 4 cut(s) 127, 229, 269, 314
PspPPI RGGWCCY 2 cut(s) 229, 269
PstI CTGCAG 1 cut(s) 1049
PsuI RGATCY 1 cut(s) 1373
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 4 cut(s) 167, 524, 605, 1061
RsaNI GTAC 4 cut(s) 166, 523, 604, 1060
RseI CAYNNNNRTG 1 cut(s) 1033
SapI GCTCTTC 1 cut(s) 1008
SaqAI TTAA 8 cut(s) 261, 446, 584, 633, 750, 1112, 1203, 1356
SatI GCNGC 2 cut(s) 222, 615
Sau3AI GATC 5 cut(s) 682, 730, 943, 1012, 1373
Sau96I GGNCC 4 cut(s) 127, 229, 269, 314
SchI GAGTC 3 cut(s) 473, 1258, 1400
ScrFI CCNGG 6 cut(s) 126, 190, 273, 485, 1106, 1234
SduI GDGCHC 1 cut(s) 199
SfaNI GCATC 2 cut(s) 175, 1147
SfcI CTRYAG 1 cut(s) 1045
SinI GGWCC 2 cut(s) 229, 269
SmiMI CAYNNNNRTG 1 cut(s) 1033
SmlI CTYRAG 2 cut(s) 1202, 1266
SmoI CTYRAG 2 cut(s) 1202, 1266
Sse9I AATT 5 cut(s) 101, 285, 594, 630, 790
SsiI CCGC 2 cut(s) 873, 1160
SspMI CTAG 3 cut(s) 819, 1083, 1340
StyD4I CCNGG 6 cut(s) 124, 188, 271, 483, 1104, 1232
StyI CCWWGG 2 cut(s) 1082, 1223
TaaI ACNGT 8 cut(s) 73, 348, 803, 851, 967, 1090, 1190, 1216
TaiI ACGT 2 cut(s) 144, 171
TaqI TCGA 1 cut(s) 1015
TasI AATT 5 cut(s) 101, 285, 594, 630, 790
TatI WGTACW 3 cut(s) 522, 603, 1059
TfiI GAWTC 6 cut(s) 355, 370, 398, 927, 1076, 1196
Tru1I TTAA 8 cut(s) 261, 446, 584, 633, 750, 1112, 1203, 1356
Tru9I TTAA 8 cut(s) 261, 446, 584, 633, 750, 1112, 1203, 1356
TscAI CASTG 8 cut(s) 76, 351, 958, 1054, 1095, 1150, 1302, 1408
TseFI GTSAC 3 cut(s) 761, 797, 1403
TseI GCWGC 2 cut(s) 221, 614
Tsp45I GTSAC 3 cut(s) 761, 797, 1403
TspGWI ACGGA 1 cut(s) 852
TspRI CASTG 8 cut(s) 76, 351, 958, 1054, 1095, 1150, 1302, 1408
Vha464I CTTAAG 1 cut(s) 1202
VpaK11BI GGWCC 2 cut(s) 229, 269
VspI ATTAAT 1 cut(s) 633
XapI RAATTY 1 cut(s) 790
XceI RCATGY 1 cut(s) 917
XmaJI CCTAGG 1 cut(s) 1082
XmiI GTMKAC 2 cut(s) 972, 1101
XspI CTAG 3 cut(s) 819, 1083, 1340
Zsp2I ATGCAT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.