Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012531

Physical Location & Seq

Genomic Coordinates Reverse (-)

91989122 .. 91993091

Gene Structure 3970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTTCAAACCCAGATGGGCGTTTGTTCTCACCATCCTCCTCAATCTTCATCTGGGTAGTGTTTTTGCTGCTATTCCCACAGACCCACTTGTCCAGCAGCGATTGGATAGAGTTCTTCAGCTTCCGGGCCAGACCTTCAACGTGAGCTTTTCACACTATGCTGGGTACGTCAATGTTAATGAAGAAGCTGGGAGGGCTCTCTTCTACTGGTTCGTTGAGGCTGCTGACGACCCTGCTTCTAAGCCCCTTGTTCTTTGGCTAAATGGAGGACCTGGATGTTCATCAATTGCTTATGGGATGGCAGAGGAAATTGGCCCGTTTCATATTCATGCTGATGGGAGGACACTGTATTTGAATCCTTACTCTTGGAATCAAGTTGCTAACATTCTGTTTATTGATTCACCTGTTGGAGTTGGGTTTTCTTATTCAAACACATCCTCTGATTTGCTATCCAATGGAGATAAAAGGACTGCTAAAGACTCTCTGGCATTTTTGTTGAAGTGGCTTGAGCGCTTTCCCCAGTACAAAGGAAGGGAGTTTTATATCACAGGAGAGAGCTATGGAGGACATTATGTTCCTCAGCTAAGCCAAGCAATTGTGAAGTACAACTTGGCAACTAAGGAAAATTCAATTAATCTGAAGGGCTATATGGTGGGAAATGCTCTAACCGATGATTACCATGATCACTTGGGGGTTTTCCAGTTTATGTGGTCGGCTGGTTTGATCTCTGATCAAACATACAAGGCGCTGAACCTTTTTGCGATTTCCAGTCATTCATACACACCTCAAATTCATGTGATAGTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

269

Amino Acids

30.18

Weight (kDa)

6.11

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	42 - 252	4e-95	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30810
fragaria_vesca	FvH4_1g00550 FvH4_1g00550 FvH4_1g00550
malus_domestica	MD15G1148300.v1.1
prunus_persica	Prupe.7G266500_v2.0.a1 Prupe.7G266500_v2.0.a1 Prupe.7G266500_v2.0.a1
pyrus_communis	pycom15g13260
rosa_chinensis	RchiOBHm_Chr2g0085181
rosa_laevigata	RLG00000015663
rosa_multiflora	Rmu_sc0011989.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155580
rosa_rugosa	Rorug01G0458100
rosa_samantha	Rh2AG006500 Rh2BG007300 Rh2CG008100 Rh2DG008300
rosa_wichuraiana	Rw2G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AcsI	RAATTY	2 cut(s)	625, 789
AcuI	CTGAAG	2 cut(s)	101, 659
AfaI	GTAC	3 cut(s)	167, 524, 605
AfeI	AGCGCT	1 cut(s)	512
AgsI	TTSAA	6 cut(s)	7, 139, 355, 429, 499, 630
AjnI	CCWGG	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AloI	GAACNNNNNNTCC	2 cut(s)	558, 590
AluBI	AGCT	5 cut(s)	121, 147, 188, 558, 583
AluI	AGCT	5 cut(s)	121, 147, 188, 558, 583
Aor51HI	AGCGCT	1 cut(s)	512
AoxI	GGCC	2 cut(s)	127, 313
ApeKI	GCWGC	3 cut(s)	68, 97, 221
ApoI	RAATTY	2 cut(s)	625, 789
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
AseI	ATTAAT	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	513, 748
AspS9I	GGNCC	3 cut(s)	127, 269, 314
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	22, 393
AvaII	GGWCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	199
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	3 cut(s)	55, 109, 208
BccI	CCATC	4 cut(s)	9, 41, 292, 329
BciT130I	CCWGG	1 cut(s)	273
BclI	TGATCA	2 cut(s)	682, 730
BcnI	CCSGG	1 cut(s)	126
BfoI	RGCGCY	2 cut(s)	514, 749
BisI	GCNGC	3 cut(s)	69, 98, 222
BlpI	GCTNAGC	1 cut(s)	584
BlsI	GCNGC	3 cut(s)	70, 99, 223
Bme1390I	CCNGG	2 cut(s)	126, 273
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	127, 269, 314
BmrFI	CCNGG	2 cut(s)	126, 273
BmrI	ACTGGG	1 cut(s)	514
BmuI	ACTGGG	1 cut(s)	514
Bpu10I	CCTNAGC	1 cut(s)	579
Bpu1102I	GCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	280
Bse1I	ACTGG	4 cut(s)	212, 520, 700, 768
Bse8I	GATNNNNATC	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	4 cut(s)	33, 281, 303, 434
BseJI	GATNNNNATC	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	4 cut(s)	212, 520, 700, 768
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	3 cut(s)	55, 109, 208
BseYI	CCCAGC	2 cut(s)	161, 188
BshFI	GGCC	2 cut(s)	129, 315
BsiSI	CCGG	1 cut(s)	125
BsnI	GGCC	2 cut(s)	129, 315
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	682, 723, 730
Bsp1720I	GCTNAGC	1 cut(s)	584
BspANI	GGCC	2 cut(s)	129, 315
BspCNI	CTCAG	1 cut(s)	592
BsrI	ACTGG	4 cut(s)	212, 520, 700, 768
BssMI	GATC	3 cut(s)	682, 723, 730
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	348
Bst6I	CTCTTC	1 cut(s)	206
BstDEI	CTNAG	4 cut(s)	240, 579, 584, 618
BstF5I	GGATG	4 cut(s)	33, 281, 303, 434
BstH2I	RGCGCY	2 cut(s)	514, 749
BstHHI	GCGC	2 cut(s)	513, 748
BstKTI	GATC	3 cut(s)	685, 726, 733
BstMBI	GATC	3 cut(s)	682, 723, 730
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	124, 271
BstV1I	GCAGC	3 cut(s)	55, 109, 208
BsuRI	GGCC	2 cut(s)	129, 315
BtsCI	GGATG	4 cut(s)	33, 281, 303, 434
BtsIMutI	CAGTG	1 cut(s)	344
CfoI	GCGC	2 cut(s)	513, 748
Cfr13I	GGNCC	3 cut(s)	127, 269, 314
Csp6I	GTAC	3 cut(s)	166, 523, 604
CviAII	CATG	3 cut(s)	329, 680, 794
CviQI	GTAC	3 cut(s)	166, 523, 604
DdeI	CTNAG	4 cut(s)	240, 579, 584, 618
DpnI	GATC	3 cut(s)	684, 725, 732
DpnII	GATC	3 cut(s)	682, 723, 730
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	269
Eco47III	AGCGCT	1 cut(s)	512
Eco57I	CTGAAG	2 cut(s)	101, 659
EcoO109I	RGGNCCY	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	3 cut(s)	332, 683, 797
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FatI	CATG	3 cut(s)	328, 679, 793
FbaI	TGATCA	2 cut(s)	682, 730
Fnu4HI	GCNGC	3 cut(s)	69, 98, 222
FokI	GGATG	4 cut(s)	20, 288, 310, 421
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	3 cut(s)	69, 98, 222
GlaI	GCGC	2 cut(s)	512, 747
GluI	GCNGC	3 cut(s)	69, 98, 222
GsaI	CCCAGC	2 cut(s)	165, 192
HaeII	RGCGCY	2 cut(s)	514, 749
HaeIII	GGCC	2 cut(s)	129, 315
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	2 cut(s)	513, 748
Hin1II	CATG	3 cut(s)	332, 683, 797
Hin6I	GCGC	2 cut(s)	511, 746
HinP1I	GCGC	2 cut(s)	511, 746
HinfI	GANTC	4 cut(s)	355, 370, 398, 479
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	2 cut(s)	22, 393
Hpy188I	TCNGA	3 cut(s)	442, 639, 730
HpyAV	CCTTC	3 cut(s)	145, 525, 634
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	2 cut(s)	141, 168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	4 cut(s)	240, 579, 584, 618
HpySE526I	ACGT	2 cut(s)	141, 168
Hsp92II	CATG	3 cut(s)	332, 683, 797
HspAI	GCGC	2 cut(s)	511, 746
Ksp22I	TGATCA	2 cut(s)	682, 730
Kzo9I	GATC	3 cut(s)	682, 723, 730
Lsp1109I	GCAGC	3 cut(s)	55, 109, 208
MaeII	ACGT	2 cut(s)	141, 168
MalI	GATC	3 cut(s)	684, 725, 732
MboI	GATC	3 cut(s)	682, 723, 730
MboII	GAAGA	4 cut(s)	38, 107, 193, 194
MfeI	CAATTG	2 cut(s)	285, 594
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	6 cut(s)	285, 309, 594, 625, 630, 789
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	388
MseI	TTAA	2 cut(s)	177, 633
MslI	CAYNNNNRTG	2 cut(s)	327, 333
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	126, 273
MunI	CAATTG	2 cut(s)	285, 594
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	3 cut(s)	682, 723, 730
NlaIII	CATG	3 cut(s)	332, 683, 797
PfeI	GAWTC	3 cut(s)	355, 370, 398
PkrI	GCNGC	3 cut(s)	70, 99, 223
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PpuMI	RGGWCCY	1 cut(s)	269
PshBI	ATTAAT	1 cut(s)	633
Psp5II	RGGWCCY	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	271
PspFI	CCCAGC	2 cut(s)	161, 188
PspGI	CCWGG	1 cut(s)	271
PspPI	GGNCC	3 cut(s)	127, 269, 314
PspPPI	RGGWCCY	1 cut(s)	269
RsaI	GTAC	3 cut(s)	167, 524, 605
RsaNI	GTAC	3 cut(s)	166, 523, 604
RseI	CAYNNNNRTG	2 cut(s)	327, 333
SaqAI	TTAA	2 cut(s)	177, 633
SatI	GCNGC	3 cut(s)	69, 98, 222
Sau3AI	GATC	3 cut(s)	682, 723, 730
Sau96I	GGNCC	3 cut(s)	127, 269, 314
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	2 cut(s)	126, 273
SduI	GDGCHC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	2 cut(s)	327, 333
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	6 cut(s)	285, 309, 594, 625, 630, 789
StyD4I	CCNGG	2 cut(s)	124, 271
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	2 cut(s)	144, 171
TasI	AATT	6 cut(s)	285, 309, 594, 625, 630, 789
TatI	WGTACW	2 cut(s)	522, 603
TfiI	GAWTC	3 cut(s)	355, 370, 398
Tru1I	TTAA	2 cut(s)	177, 633
Tru9I	TTAA	2 cut(s)	177, 633
TscAI	CASTG	1 cut(s)	351
TseI	GCWGC	3 cut(s)	68, 97, 221
TspDTI	ATGAA	7 cut(s)	38, 195, 270, 311, 317, 765, 782
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	2 cut(s)	625, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.