FvH4_1g01160

CCR4-associated factor 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016481
Physical Location & Seq
Forward (+)
586533 .. 588077
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01160.t1

Sequence Viewer

Length: 825 bp
ATGTCTTTTGTGATGAAGAGTGATGATGTTCTTATTAGGGAAGTTTGGAATGATAATGTTGATGCGGAATTTGAGTTGATTCGGAATATCGTGGATGAATACCCTTATATAGCTATGGATACAGAGTTTCCAGGTATCGTTTCGCGCGCTCTGGGCACTTTCAAGAACAGCTTTGATTATAACTATCAGACCCTGAAGCTCAATGTGGACCTGTTGAAGTTGATTCAGCTGGGTCTCACGTTTTCAGACGAGAATGGGAACCTGCCCACCTGTGGAACTGACAAGTACTGTGTGTGGCAGTTCAATTTCTGTAACTTTAATCTCAATGAGGATATGTATGCTCCGGAATCGATTGAGTTATTGACCCACAGTGGAATGGATTTCAAGAAGAACAATGAGAAGGGTATCGATGCTCGTAGGTTCAGTGAGCTGTTGATGACCTCTGGTATTGTGCTGAATGAAAATGTGGTTTGGGTGACCTTCCATAGTGGATATGATTTCGGTTACTTGCTCAAGCTGCTTACCTGCAAAGACCTTCCAGACTCGCAGACAAAGTTCTTTGAATTGATCAATTTGTACTTCCCGAAAATTTATGATGTCAAGCATCTGATGAGGTTCTGCAACAGCCTCCATGGTGGGTTGAACAAGCTGGCGGAGCTGTTGGATGTGGAGAGAGTTGGCATTTCTCACCAAGCTGGTTCTGATAGTTTACTCACCAGTTTTACCTTCATGAAACTGAAAAACAATTTCTTTAGTGGGTCTCCTAAGAAATATGCTGGTGTCTTATATGGTCTTGGTATTGAGTATGGACATGGATCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CAF1

Protein Analysis

275

Amino Acids

31.38

Weight (kDa)

5.17

Isoelectric Point (pI)

21.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 15 - 136 1.1e-15 CAF1 family ribonuclease
CAF1 PF04857 158 - 217 7.1e-06 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016481)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01160 FvH4_1g01160
malus_domestica MD02G1009600.v1.1
prunus_persica Prupe.7G260400_v2.0.a1
pyrus_communis pycom15g13870
rosa_chinensis RchiOBHm_Chr2g0085951
rosa_laevigata RLG00000015729
rosa_roxburghii Rroxscaffold_2G00154900
rosa_rugosa Rorug01G0464600
rosa_samantha Rh2AG013800 Rh2BG014300 Rh2CG014800 Rh2DG016100
rosa_wichuraiana Rw2G001220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
Acc36I ACCTGC 2 cut(s) 270, 533
AccII CGCG 2 cut(s) 145, 147
AccIII TCCGGA 1 cut(s) 343
AciI CCGC 2 cut(s) 65, 653
AclWI GGATC 1 cut(s) 823
AcsI RAATTY 2 cut(s) 68, 588
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 2 cut(s) 287, 578
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 6 cut(s) 163, 217, 304, 385, 563, 643
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 9 cut(s) 113, 171, 199, 229, 430, 517, 649, 658, 695
AluI AGCT 9 cut(s) 113, 171, 199, 229, 430, 517, 649, 658, 695
Alw26I GTCTC 2 cut(s) 239, 765
AlwI GGATC 1 cut(s) 823
AlwNI CAGNNNCTG 1 cut(s) 193
Aor13HI TCCGGA 1 cut(s) 343
ApeKI GCWGC 1 cut(s) 517
ApoI RAATTY 2 cut(s) 68, 588
AspLEI GCGC 2 cut(s) 147, 149
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 3 cut(s) 487, 680, 706
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 504
BciT130I CCWGG 1 cut(s) 132
BciVI GTATCC 1 cut(s) 112
BclI TGATCA 1 cut(s) 567
BcoDI GTCTC 2 cut(s) 239, 765
BfuAI ACCTGC 2 cut(s) 270, 533
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 1 cut(s) 518
BlsI GCNGC 1 cut(s) 519
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 3 cut(s) 52, 400, 613
BpuEI CTTGAG 1 cut(s) 497
Bsa29I ATCGAT 2 cut(s) 350, 408
BsaI GGTCTC 2 cut(s) 239, 765
BsaJI CCNNGG 1 cut(s) 631
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 717
BseAI TCCGGA 1 cut(s) 343
BseBI CCWGG 1 cut(s) 132
BseCI ATCGAT 2 cut(s) 350, 408
BseDI CCNNGG 1 cut(s) 631
BseGI GGATG 2 cut(s) 100, 670
BseLI CCNNNNNNNGG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 717
BsePI GCGCGC 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 1 cut(s) 504
BseYI CCCAGC 1 cut(s) 229
Bsh1236I CGCG 2 cut(s) 145, 147
BshVI ATCGAT 2 cut(s) 350, 408
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 2 cut(s) 239, 765
Bso31I GGTCTC 2 cut(s) 239, 765
Bsp1286I GDGCHC 1 cut(s) 158
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 2 cut(s) 567, 815
Bsp19I CCATGG 1 cut(s) 631
BspACI CCGC 2 cut(s) 65, 653
BspDI ATCGAT 2 cut(s) 350, 408
BspEI TCCGGA 1 cut(s) 343
BspFNI CGCG 2 cut(s) 145, 147
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 1 cut(s) 260
BspMI ACCTGC 2 cut(s) 270, 533
BspPI GGATC 1 cut(s) 823
BspTNI GGTCTC 2 cut(s) 239, 765
BsrI ACTGG 1 cut(s) 717
BssECI CCNNGG 1 cut(s) 631
BssHII GCGCGC 1 cut(s) 145
BssMI GATC 2 cut(s) 567, 815
BssT1I CCWWGG 1 cut(s) 631
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 290, 371
Bst6I CTCTTC 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 147, 651
BstDEI CTNAG 1 cut(s) 765
BstDSI CCRYGG 1 cut(s) 631
BstEII GGTNACC 1 cut(s) 475
BstF5I GGATG 2 cut(s) 100, 670
BstFNI CGCG 2 cut(s) 145, 147
BstHHI GCGC 2 cut(s) 147, 149
BstKTI GATC 2 cut(s) 570, 818
BstMAI GTCTC 2 cut(s) 239, 765
BstMBI GATC 2 cut(s) 567, 815
BstMWI GCNNNNNNNGC 3 cut(s) 153, 517, 655
BstNI CCWGG 1 cut(s) 132
BstPI GGTNACC 1 cut(s) 475
BstSCI CCNGG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 2 cut(s) 145, 147
BstV1I GCAGC 1 cut(s) 504
BstX2I RGATCY 1 cut(s) 815
BstYI RGATCY 1 cut(s) 815
Bsu15I ATCGAT 2 cut(s) 350, 408
BsuI GTATCC 1 cut(s) 112
BsuTUI ATCGAT 2 cut(s) 350, 408
BtgI CCRYGG 1 cut(s) 631
BtsCI GGATG 2 cut(s) 100, 670
BtsIMutI CAGTG 2 cut(s) 376, 430
BveI ACCTGC 2 cut(s) 270, 533
Cac8I GCNNGC 2 cut(s) 147, 651
CaiI CAGNNNCTG 1 cut(s) 193
CciI TCATGA 1 cut(s) 729
CfoI GCGC 2 cut(s) 147, 149
Cfr13I GGNCC 1 cut(s) 208
ClaI ATCGAT 2 cut(s) 350, 408
Csp6I GTAC 2 cut(s) 286, 577
CviAII CATG 3 cut(s) 632, 730, 812
CviQI GTAC 2 cut(s) 286, 577
DdeI CTNAG 1 cut(s) 765
DpnI GATC 2 cut(s) 569, 817
DpnII GATC 2 cut(s) 567, 815
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EciI GGCGGA 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 631
Eco31I GGTCTC 2 cut(s) 239, 765
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 215
Eco91I GGTNACC 1 cut(s) 475
EcoO65I GGTNACC 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 631
FaeI CATG 3 cut(s) 635, 733, 815
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 3 cut(s) 631, 729, 811
FbaI TGATCA 1 cut(s) 567
Fnu4HI GCNGC 1 cut(s) 518
FokI GGATG 2 cut(s) 107, 677
Fsp4HI GCNGC 1 cut(s) 518
GlaI GCGC 2 cut(s) 146, 148
GluI GCNGC 1 cut(s) 518
GsaI CCCAGC 1 cut(s) 233
HapII CCGG 1 cut(s) 344
HhaI GCGC 2 cut(s) 147, 149
Hin1II CATG 3 cut(s) 635, 733, 815
Hin6I GCGC 2 cut(s) 145, 147
HinP1I GCGC 2 cut(s) 145, 147
HinfI GANTC 4 cut(s) 79, 223, 347, 542
HpaII CCGG 1 cut(s) 344
HphI GGTGA 3 cut(s) 487, 680, 706
Hpy166II GTNNAC 2 cut(s) 208, 710
Hpy188I TCNGA 5 cut(s) 84, 189, 247, 609, 703
Hpy188III TCNNGA 6 cut(s) 163, 344, 385, 539, 583, 730
Hpy8I GTNNAC 2 cut(s) 208, 710
HpyAV CCTTC 4 cut(s) 394, 490, 545, 736
HpyCH4III ACNGT 2 cut(s) 290, 371
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 528, 621
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 517, 655
HpyF3I CTNAG 1 cut(s) 765
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 3 cut(s) 635, 733, 815
HspAI GCGC 2 cut(s) 145, 147
Kpn2I TCCGGA 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 567
Kzo9I GATC 2 cut(s) 567, 815
LmnI GCTCC 2 cut(s) 346, 655
Lsp1109I GCAGC 1 cut(s) 504
LweI GCATC 3 cut(s) 52, 400, 613
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 3 cut(s) 311, 475, 503
MalI GATC 2 cut(s) 569, 817
MboI GATC 2 cut(s) 567, 815
MboII GAAGA 2 cut(s) 28, 400
MflI RGATCY 1 cut(s) 815
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 6 cut(s) 68, 304, 563, 571, 588, 745
MlyI GAGTC 1 cut(s) 536
MmeI TCCRAC 1 cut(s) 642
MnlI CCTC 4 cut(s) 322, 451, 606, 638
MroI TCCGGA 1 cut(s) 343
MseI TTAA 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 2 cut(s) 145, 147
MwoI GCNNNNNNNGC 3 cut(s) 153, 517, 655
NcoI CCATGG 1 cut(s) 631
NdeII GATC 2 cut(s) 567, 815
NlaIII CATG 3 cut(s) 635, 733, 815
NlaIV GGNNCC 1 cut(s) 260
NmuCI GTSAC 1 cut(s) 475
PagI TCATGA 1 cut(s) 729
PauI GCGCGC 1 cut(s) 145
PfeI GAWTC 3 cut(s) 79, 223, 347
PkrI GCNGC 1 cut(s) 519
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
PsiI TTATAA 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 130
PspEI GGTNACC 1 cut(s) 475
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 815
PteI GCGCGC 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 2 cut(s) 287, 578
RsaNI GTAC 2 cut(s) 286, 577
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 518
Sau3AI GATC 2 cut(s) 567, 815
Sau96I GGNCC 1 cut(s) 208
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 158
SfaNI GCATC 3 cut(s) 52, 400, 613
SinI GGWCC 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 6 cut(s) 68, 304, 563, 571, 588, 745
SsiI CCGC 2 cut(s) 65, 653
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 2 cut(s) 290, 371
TaiI ACGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 350, 408
TasI AATT 6 cut(s) 68, 304, 563, 571, 588, 745
TatI WGTACW 2 cut(s) 285, 576
TfiI GAWTC 3 cut(s) 79, 223, 347
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 376, 430
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 1 cut(s) 517
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 5 cut(s) 29, 111, 474, 718, 746
TspRI CASTG 2 cut(s) 376, 430
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 2 cut(s) 68, 588
ZrmI AGTACT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.