Prupe.7G260400_v2.0.a1

CCR4-associated factor 1 homolog 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016481
Physical Location & Seq
Reverse (-)
21663993 .. 21666049
2057 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G260400.1

Sequence Viewer

Length: 888 bp
ATGGTTTTTGCTCTTCTTGGTCTTGTTATTTGCATAAATTTGTGTTGCTCCTGCGAAAATAAAATGTCTTTGTTGACGAAAAGCGATTCAATTCACATTAGGGAAGTTTGGAACGATAATCTTGAGAAGGAGTTCGAATTGATTCGTAAGATTGTAGACGATTACCCTTATATAGCTATGGATACAGAGTTTCCAGGTATCGTTTTGCGGCCCATAGGCACTTTCAAGAACAGTTTTGATTATAATTATCAAACCCTTAAGGCCAATGTGGACCTCTTGAAGTTAATTCAGTTGGGTCTCACATTTACTGATGAGAACGGGAACCTTCCCACCTGTGAAACTGACAAGCACTGTGTGTGGCAATTCAATTTCCGCGACTTCAACCCTAATGAGGATGTGTATGCCAATGACTCCATAGAGTTATTGTCACAGAGCGGTATGGATTTCAAGAAGAACAACGAGAAGGGTGTTGATGCTGTTAGGTTCAGCCAGCTACTGATGACATCCGGTGTTGTGCTGAATGAAAACGTGGTTTGGGTGACATTCCACAGTGGCTATGATTTCGGGTACTTGCTCAAGCTTCTTAAAGGCGAAACCCTTCCGGACACACAGATGGGGTTCTTTGATATGATCAAGGTGTATTTTCCTACAATTTATGATATCAAGCATCTCATGAGGTTCTGCAACAGCCTTCATGGTGGGTTGAACAAGCTGGCGGAGCTGCTAGATGTGGAGAGAATTGGTATTTGCCACCAAGCTGGTTCTGATAGTTTGCTGACTAGTTGTACGTTCATGAAACTGAAAGAGACTTTCTTTAGTGGGAATCCTGACAAATATGCTGGTGTTTTATATGGTCTTGGTGTTGAGAATGGATATAATTCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CAF1

Protein Analysis

296

Amino Acids

33.62

Weight (kDa)

5.02

Isoelectric Point (pI)

21.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016481)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01160 FvH4_1g01160
malus_domestica MD02G1009600.v1.1
prunus_persica Prupe.7G260400_v2.0.a1
pyrus_communis pycom15g13870
rosa_chinensis RchiOBHm_Chr2g0085951
rosa_laevigata RLG00000015729
rosa_roxburghii Rroxscaffold_2G00154900
rosa_rugosa Rorug01G0464600
rosa_samantha Rh2AG013800 Rh2BG014300 Rh2CG014800 Rh2DG016100
rosa_wichuraiana Rw2G001220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccBSI CCGCTC 1 cut(s) 435
AccI GTMKAC 1 cut(s) 156
AccII CGCG 1 cut(s) 375
AccIII TCCGGA 1 cut(s) 601
AciI CCGC 4 cut(s) 208, 373, 435, 716
AcsI RAATTY 1 cut(s) 37
AdeI CACNNNGTG 1 cut(s) 355
AfaI GTAC 2 cut(s) 569, 787
AfiI CCNNNNNNNGG 1 cut(s) 391
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 7 cut(s) 90, 226, 280, 367, 382, 448, 706
AhlI ACTAGT 1 cut(s) 779
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 6 cut(s) 176, 493, 580, 712, 721, 758
AluI AGCT 6 cut(s) 176, 493, 580, 712, 721, 758
Alw26I GTCTC 2 cut(s) 302, 800
AlwNI CAGNNNCTG 1 cut(s) 496
Aor13HI TCCGGA 1 cut(s) 601
AoxI GGCC 2 cut(s) 209, 261
ApeKI GCWGC 1 cut(s) 721
ApoI RAATTY 1 cut(s) 37
Asp700I GAANNNNTTC 3 cut(s) 131, 141, 597
AspS9I GGNCC 2 cut(s) 210, 271
AsuHPI GGTGA 1 cut(s) 550
AsuII TTCGAA 1 cut(s) 135
AvaII GGWCC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 708
BccI CCATC 1 cut(s) 607
BciT130I CCWGG 1 cut(s) 195
BciVI GTATCC 1 cut(s) 175
BclI TGATCA 1 cut(s) 630
BcoDI GTCTC 2 cut(s) 302, 800
BcuI ACTAGT 1 cut(s) 779
BfaI CTAG 2 cut(s) 725, 780
BfrI CTTAAG 1 cut(s) 257
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 2 cut(s) 209, 722
BlsI GCNGC 2 cut(s) 210, 723
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 210, 271
BmiI GGNNCC 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 2 cut(s) 463, 676
Bpu14I TTCGAA 1 cut(s) 135
BpuEI CTTGAG 2 cut(s) 143, 560
BsaI GGTCTC 1 cut(s) 302
BsaWI WCCGGW 2 cut(s) 506, 601
Bsc4I CCNNNNNNNGG 1 cut(s) 391
BseAI TCCGGA 1 cut(s) 601
BseBI CCWGG 1 cut(s) 195
BseGI GGATG 2 cut(s) 400, 503
BseLI CCNNNNNNNGG 1 cut(s) 391
BseXI GCAGC 1 cut(s) 708
Bsh1236I CGCG 1 cut(s) 375
BshFI GGCC 2 cut(s) 211, 263
BsiSI CCGG 2 cut(s) 507, 602
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 2 cut(s) 302, 800
BsnI GGCC 2 cut(s) 211, 263
Bso31I GGTCTC 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 135
Bsp13I TCCGGA 1 cut(s) 601
Bsp143I GATC 1 cut(s) 630
BspACI CCGC 4 cut(s) 208, 373, 435, 716
BspANI GGCC 2 cut(s) 211, 263
BspEI TCCGGA 1 cut(s) 601
BspFNI CGCG 1 cut(s) 375
BspHI TCATGA 2 cut(s) 672, 792
BspLI GGNNCC 1 cut(s) 323
BspQI GCTCTTC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 135
BspTI CTTAAG 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 435
BssMI GATC 1 cut(s) 630
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 3 cut(s) 233, 353, 551
Bst6I CTCTTC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 257
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 491, 714
BstF5I GGATG 2 cut(s) 400, 503
BstFNI CGCG 1 cut(s) 375
BstKTI GATC 1 cut(s) 633
BstMAI GTCTC 2 cut(s) 302, 800
BstMBI GATC 1 cut(s) 630
BstMWI GCNNNNNNNGC 1 cut(s) 718
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 708
BstXI CCANNNNNNTGG 1 cut(s) 758
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 211, 263
BtsCI GGATG 2 cut(s) 400, 503
BtsIMutI CAGTG 2 cut(s) 349, 556
Cac8I GCNNGC 2 cut(s) 491, 714
CaiI CAGNNNCTG 1 cut(s) 496
CciI TCATGA 2 cut(s) 672, 792
Cfr13I GGNCC 2 cut(s) 210, 271
Csp6I GTAC 2 cut(s) 568, 786
CviAII CATG 3 cut(s) 673, 695, 793
CviQI GTAC 2 cut(s) 568, 786
DpnI GATC 1 cut(s) 632
DpnII GATC 1 cut(s) 630
DraIII CACNNNGTG 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EciI GGCGGA 1 cut(s) 731
Eco31I GGTCTC 1 cut(s) 302
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 193
EcoRV GATATC 1 cut(s) 661
FaeI CATG 3 cut(s) 676, 698, 796
FatI CATG 3 cut(s) 672, 694, 792
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 209, 722
FokI GGATG 2 cut(s) 407, 490
Fsp4HI GCNGC 2 cut(s) 209, 722
FspBI CTAG 2 cut(s) 725, 780
GluI GCNGC 2 cut(s) 209, 722
HaeIII GGCC 2 cut(s) 211, 263
HapII CCGG 2 cut(s) 507, 602
Hin1II CATG 3 cut(s) 676, 698, 796
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 4 cut(s) 86, 142, 410, 823
HpaII CCGG 2 cut(s) 507, 602
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 3 cut(s) 75, 157, 271
Hpy188I TCNGA 1 cut(s) 766
Hpy188III TCNNGA 8 cut(s) 122, 226, 277, 448, 602, 673, 793, 827
Hpy8I GTNNAC 3 cut(s) 75, 157, 271
HpyAV CCTTC 5 cut(s) 121, 335, 457, 608, 701
HpyCH4III ACNGT 3 cut(s) 233, 353, 551
HpyCH4IV ACGT 2 cut(s) 528, 788
HpyCH4V TGCA 2 cut(s) 33, 684
HpyF10VI GCNNNNNNNGC 1 cut(s) 718
HpySE526I ACGT 2 cut(s) 528, 788
Hsp92II CATG 3 cut(s) 676, 698, 796
Kpn2I TCCGGA 1 cut(s) 601
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 1 cut(s) 630
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 53, 718
Lsp1109I GCAGC 1 cut(s) 708
LweI GCATC 2 cut(s) 463, 676
MaeI CTAG 2 cut(s) 725, 780
MaeII ACGT 2 cut(s) 528, 788
MaeIII GTNAC 2 cut(s) 426, 538
MalI GATC 1 cut(s) 632
MbiI CCGCTC 1 cut(s) 435
MboI GATC 1 cut(s) 630
MboII GAAGA 2 cut(s) 5, 463
MlyI GAGTC 1 cut(s) 404
MnlI CCTC 3 cut(s) 284, 385, 669
MroI TCCGGA 1 cut(s) 601
MroXI GAANNNNTTC 3 cut(s) 131, 141, 597
MseI TTAA 3 cut(s) 258, 284, 585
MslI CAYNNNNRTG 1 cut(s) 611
MspCI CTTAAG 1 cut(s) 257
MspI CCGG 2 cut(s) 507, 602
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 718
NdeII GATC 1 cut(s) 630
NlaIII CATG 3 cut(s) 676, 698, 796
NlaIV GGNNCC 1 cut(s) 323
NmuCI GTSAC 2 cut(s) 426, 538
NspV TTCGAA 1 cut(s) 135
PagI TCATGA 2 cut(s) 672, 792
PciSI GCTCTTC 1 cut(s) 18
PdmI GAANNNNTTC 3 cut(s) 131, 141, 597
PfeI GAWTC 3 cut(s) 86, 142, 823
PkrI GCNGC 2 cut(s) 210, 723
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PsiI TTATAA 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 323
PspPI GGNCC 2 cut(s) 210, 271
PstNI CAGNNNCTG 1 cut(s) 496
RsaI GTAC 2 cut(s) 569, 787
RsaNI GTAC 2 cut(s) 568, 786
RseI CAYNNNNRTG 1 cut(s) 611
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 258, 284, 585
SatI GCNGC 2 cut(s) 209, 722
Sau3AI GATC 1 cut(s) 630
Sau96I GGNCC 2 cut(s) 210, 271
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 195
SfaNI GCATC 2 cut(s) 463, 676
SfuI TTCGAA 1 cut(s) 135
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 3 cut(s) 122, 257, 575
SmoI CTYRAG 3 cut(s) 122, 257, 575
SpeI ACTAGT 1 cut(s) 779
SsiI CCGC 4 cut(s) 208, 373, 435, 716
SspMI CTAG 2 cut(s) 725, 780
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 3 cut(s) 233, 353, 551
TaiI ACGT 2 cut(s) 531, 791
TaqI TCGA 1 cut(s) 135
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 3 cut(s) 86, 142, 823
Tru1I TTAA 3 cut(s) 258, 284, 585
Tru9I TTAA 3 cut(s) 258, 284, 585
TscAI CASTG 2 cut(s) 356, 556
TseFI GTSAC 2 cut(s) 426, 538
TseI GCWGC 1 cut(s) 721
Tsp45I GTSAC 2 cut(s) 426, 538
TspDTI ATGAA 4 cut(s) 537, 683, 781, 809
TspRI CASTG 2 cut(s) 356, 556
Vha464I CTTAAG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 3 cut(s) 131, 141, 597
XspI CTAG 2 cut(s) 725, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.