FvH4_1g02960

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016722
Physical Location & Seq
Forward (+)
1675483 .. 1676421
939 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02960.t1

Sequence Viewer

Length: 636 bp
ATGGTCATGACCTGTCCAAGAAGAACCAAGATAGAGAAGATCGAACATCTTAGTAGCAGGCAAGTCACCTTCTCCAAACGCCGAAAGGGGTTGTTCAACAAGGCAGGAAAATTTTCAGTTCGATGCGGTGCAGAGATTGCAGTCATAGTTTTCTCCAACACCAAAAAGATGTACCAGTTCTCAAGCCCCAGCATGGAACACATTCTTTCAAGAAGGAACAGAGTCATGAAGGAACGTGCCGGCGGCTCCGTAATGGAGTCTCCAGAAAAGAAGAGCCAACATGAGGCGCCGAGTTTATCATCTGATAGTTTGAGCGCAATAGCAGCGGTACTGCAGGAAGAAAACAGAGCCCTAAACTTGGATGGCTCGAGGTTGAAGGGTTTGGAGTTGGATGGCATGAGTTTGAGAGAGCTGAATGAGCTAGAGAAACAAATAAGGGAAGGAATAGAATCAATTGAGAAAAGGAAGATTGACGTGGAAAACTACTACCAGCAGCCCGTATACATGCTTGAAGATTCAGACCGTTTGGATGGGAATACTAGCAATTTTTTCTCTGGTACAAGCTCAAGTGCCATATCAGATTGTATTGAATCAGAGCTAAGTAAACAGTTTGTAGATACTTGTTTGCACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

212

Amino Acids

23.86

Weight (kDa)

8.3

Isoelectric Point (pI)

69.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 13 - 60 3e-20 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 103 - 158 6.4e-06 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016722)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02960 FvH4_1g18960
rosa_chinensis RchiOBHm_Chr2g0109981
rosa_laevigata RLG00000017775
rosa_multiflora Rmu_sc0001870.1_g000005 Rmu_sc0004650.1_g000002
rosa_roxburghii Rroxscaffold_2G00133810
rosa_rugosa Rorug02G0162700 Rorug02G0164900
rosa_samantha Rh2AG216400 Rh2BG226500 Rh2CG218600 Rh2DG222000
rosa_wichuraiana Rw2G016720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 286
AccI GTMKAC 1 cut(s) 501
AciI CCGC 3 cut(s) 126, 243, 326
AcsI RAATTY 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 287
AfaI GTAC 3 cut(s) 173, 330, 559
AfiI CCNNNNNNNGG 3 cut(s) 193, 283, 358
AgsI TTSAA 5 cut(s) 97, 210, 376, 512, 590
AjiI CACGTC 1 cut(s) 475
AluBI AGCT 4 cut(s) 412, 421, 564, 598
AluI AGCT 4 cut(s) 412, 421, 564, 598
Alw26I GTCTC 1 cut(s) 264
Ama87I CYCGRG 1 cut(s) 367
ApeKI GCWGC 2 cut(s) 323, 493
ApoI RAATTY 1 cut(s) 110
Asp700I GAANNNNTTC 2 cut(s) 112, 201
AspLEI GCGC 2 cut(s) 289, 317
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 367
BanI GGYRCC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 335, 505
BccI CCATC 3 cut(s) 356, 386, 524
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 2 cut(s) 422, 540
BfmI CTRYAG 1 cut(s) 332
BfoI RGCGCY 1 cut(s) 290
BisI GCNGC 3 cut(s) 244, 324, 494
BlsI GCNGC 3 cut(s) 245, 325, 495
BmeT110I CYCGRG 1 cut(s) 367
BmgBI CACGTC 1 cut(s) 475
BmiI GGNNCC 2 cut(s) 247, 288
BmsI GCATC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 166, 550
BsaHI GRCGYC 1 cut(s) 287
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 283, 358
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 175
BseGI GGATG 3 cut(s) 367, 397, 535
BseLI CCNNNNNNNGG 3 cut(s) 193, 283, 358
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 2 cut(s) 335, 505
BseYI CCCAGC 1 cut(s) 188
BsgI GTGCAG 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 367
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 3 cut(s) 193, 283, 358
BsmAI GTCTC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 3 cut(s) 126, 243, 326
BspHI TCATGA 2 cut(s) 6, 225
BspLI GGNNCC 2 cut(s) 247, 288
BspMAI CTGCAG 1 cut(s) 336
BspQI GCTCTTC 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 175
BssAI RCCGGY 1 cut(s) 239
BssMI GATC 1 cut(s) 39
BssNAI GTATAC 1 cut(s) 502
BssNI GRCGYC 1 cut(s) 287
Bst1107I GTATAC 1 cut(s) 502
Bst4CI ACNGT 2 cut(s) 524, 609
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 59, 241
BstDEI CTNAG 2 cut(s) 50, 599
BstF5I GGATG 3 cut(s) 367, 397, 535
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 2 cut(s) 289, 317
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 137, 323, 418
BstNSI RCATGY 1 cut(s) 508
BstSFI CTRYAG 1 cut(s) 332
BstV1I GCAGC 2 cut(s) 335, 505
BstZ17I GTATAC 1 cut(s) 502
BtrI CACGTC 1 cut(s) 475
BtsCI GGATG 3 cut(s) 367, 397, 535
Cac8I GCNNGC 2 cut(s) 59, 241
CciI TCATGA 2 cut(s) 6, 225
CfoI GCGC 2 cut(s) 289, 317
Cfr10I RCCGGY 1 cut(s) 239
Csp6I GTAC 3 cut(s) 172, 329, 558
CviAII CATG 6 cut(s) 7, 193, 226, 281, 397, 505
CviQI GTAC 3 cut(s) 172, 329, 558
DdeI CTNAG 2 cut(s) 50, 599
DinI GGCGCC 1 cut(s) 288
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 352
EgeI GGCGCC 1 cut(s) 288
EheI GGCGCC 1 cut(s) 288
FaeI CATG 6 cut(s) 10, 196, 229, 284, 400, 508
FaiI YATR 9 cut(s) 8, 146, 194, 227, 282, 398, 502, 506, 575
FatI CATG 6 cut(s) 6, 192, 225, 280, 396, 504
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 3 cut(s) 244, 324, 494
FokI GGATG 3 cut(s) 374, 404, 542
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 3 cut(s) 244, 324, 494
FspBI CTAG 2 cut(s) 422, 540
GlaI GCGC 2 cut(s) 288, 316
GluI GCNGC 3 cut(s) 244, 324, 494
GsaI CCCAGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 290
HapII CCGG 1 cut(s) 240
HhaI GCGC 2 cut(s) 289, 317
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 6 cut(s) 10, 196, 229, 284, 400, 508
Hin6I GCGC 2 cut(s) 287, 315
HinP1I GCGC 2 cut(s) 287, 315
HinfI GANTC 5 cut(s) 222, 257, 449, 515, 590
HpaII CCGG 1 cut(s) 240
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 502, 605
Hpy188I TCNGA 4 cut(s) 304, 520, 580, 595
Hpy188III TCNNGA 4 cut(s) 7, 210, 226, 263
Hpy8I GTNNAC 2 cut(s) 502, 605
HpyAV CCTTC 5 cut(s) 79, 207, 223, 370, 434
HpyCH4III ACNGT 2 cut(s) 524, 609
HpyCH4IV ACGT 2 cut(s) 235, 474
HpyCH4V TGCA 4 cut(s) 131, 140, 334, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 323, 418
HpyF3I CTNAG 2 cut(s) 50, 599
HpySE526I ACGT 2 cut(s) 235, 474
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 6 cut(s) 10, 196, 229, 284, 400, 508
HspAI GCGC 2 cut(s) 287, 315
KasI GGCGCC 1 cut(s) 286
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
Kzo9I GATC 1 cut(s) 39
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 1 cut(s) 251
Lsp1109I GCAGC 2 cut(s) 335, 505
LweI GCATC 1 cut(s) 113
MaeI CTAG 2 cut(s) 422, 540
MaeII ACGT 2 cut(s) 235, 474
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 6 cut(s) 33, 49, 283, 350, 478, 524
MfeI CAATTG 1 cut(s) 453
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 3 cut(s) 110, 453, 544
Mly113I GGCGCC 1 cut(s) 287
MlyI GAGTC 2 cut(s) 231, 266
MmeI TCCRAC 2 cut(s) 180, 369
MnlI CCTC 2 cut(s) 277, 363
MroNI GCCGGC 1 cut(s) 239
MroXI GAANNNNTTC 2 cut(s) 112, 201
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 1 cut(s) 240
MunI CAATTG 1 cut(s) 453
MwoI GCNNNNNNNGC 3 cut(s) 137, 323, 418
NaeI GCCGGC 1 cut(s) 241
NarI GGCGCC 1 cut(s) 287
NdeII GATC 1 cut(s) 39
NgoMIV GCCGGC 1 cut(s) 239
NlaIII CATG 6 cut(s) 10, 196, 229, 284, 400, 508
NlaIV GGNNCC 2 cut(s) 247, 288
NmeAIII GCCGAG 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 508
PaeR7I CTCGAG 1 cut(s) 367
PagI TCATGA 2 cut(s) 6, 225
PciSI GCTCTTC 1 cut(s) 266
PdiI GCCGGC 1 cut(s) 241
PdmI GAANNNNTTC 2 cut(s) 112, 201
PfeI GAWTC 3 cut(s) 449, 515, 590
PkrI GCNGC 3 cut(s) 245, 325, 495
PleI GAGTC 2 cut(s) 230, 265
PluTI GGCGCC 1 cut(s) 290
PpsI GAGTC 2 cut(s) 230, 265
PspFI CCCAGC 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 247, 288
PspXI VCTCGAGB 1 cut(s) 367
PstI CTGCAG 1 cut(s) 336
RsaI GTAC 3 cut(s) 173, 330, 559
RsaNI GTAC 3 cut(s) 172, 329, 558
SapI GCTCTTC 1 cut(s) 266
SatI GCNGC 3 cut(s) 244, 324, 494
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 2 cut(s) 231, 266
SduI GDGCHC 1 cut(s) 352
SetI ASST 9 cut(s) 14, 71, 238, 374, 414, 423, 477, 566, 600
SfaNI GCATC 1 cut(s) 113
SfcI CTRYAG 1 cut(s) 332
SfoI GGCGCC 1 cut(s) 288
Sfr274I CTCGAG 1 cut(s) 367
SlaI CTCGAG 1 cut(s) 367
SmlI CTYRAG 3 cut(s) 181, 367, 565
SmoI CTYRAG 3 cut(s) 181, 367, 565
Sse9I AATT 3 cut(s) 110, 453, 544
SsiI CCGC 3 cut(s) 126, 243, 326
SspDI GGCGCC 1 cut(s) 286
SspMI CTAG 2 cut(s) 422, 540
TaaI ACNGT 2 cut(s) 524, 609
TaiI ACGT 2 cut(s) 238, 477
TaqI TCGA 3 cut(s) 42, 121, 368
TasI AATT 3 cut(s) 110, 453, 544
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 3 cut(s) 449, 515, 590
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 323, 493
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 1 cut(s) 238
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 508
XhoI CTCGAG 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 501
XmnI GAANNNNTTC 2 cut(s) 112, 201
XspI CTAG 2 cut(s) 422, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.