transcription regulatory region sequence-specific DNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g02960 FvH4_1g18960 |
| rosa_chinensis | RchiOBHm_Chr2g0109981 |
| rosa_laevigata | RLG00000017775 |
| rosa_multiflora | Rmu_sc0001870.1_g000005 Rmu_sc0004650.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00133810 |
| rosa_rugosa | Rorug02G0162700 Rorug02G0164900 |
| rosa_samantha | Rh2AG216400 Rh2BG226500 Rh2CG218600 Rh2DG222000 |
| rosa_wichuraiana | Rw2G016720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 50, 82 |
| AluBI | AGCT | 1 cut(s) | 214 |
| AluI | AGCT | 1 cut(s) | 214 |
| Alw26I | GTCTC | 1 cut(s) | 7 |
| AsuHPI | GGTGA | 1 cut(s) | 40 |
| BclI | TGATCA | 1 cut(s) | 135 |
| BcoDI | GTCTC | 1 cut(s) | 7 |
| BfaI | CTAG | 1 cut(s) | 201 |
| BmiI | GGNNCC | 2 cut(s) | 72, 178 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 203, 235 |
| BpmI | CTGGAG | 1 cut(s) | 230 |
| BpuEI | CTTGAG | 1 cut(s) | 215 |
| BsaI | GGTCTC | 1 cut(s) | 7 |
| Bse1I | ACTGG | 1 cut(s) | 213 |
| Bse3DI | GCAATG | 1 cut(s) | 5 |
| BseGI | GGATG | 1 cut(s) | 138 |
| BseMI | GCAATG | 1 cut(s) | 5 |
| BseMII | CTCAG | 1 cut(s) | 231 |
| BseNI | ACTGG | 1 cut(s) | 213 |
| BseRI | GAGGAG | 2 cut(s) | 128, 218 |
| BsmAI | GTCTC | 1 cut(s) | 7 |
| Bso31I | GGTCTC | 1 cut(s) | 7 |
| Bsp143I | GATC | 2 cut(s) | 135, 181 |
| BspCNI | CTCAG | 1 cut(s) | 232 |
| BspLI | GGNNCC | 2 cut(s) | 72, 178 |
| BspTNI | GGTCTC | 1 cut(s) | 7 |
| BsrDI | GCAATG | 1 cut(s) | 5 |
| BsrI | ACTGG | 1 cut(s) | 213 |
| BssMI | GATC | 2 cut(s) | 135, 181 |
| BstDEI | CTNAG | 2 cut(s) | 11, 240 |
| BstF5I | GGATG | 1 cut(s) | 138 |
| BstKTI | GATC | 2 cut(s) | 138, 184 |
| BstMAI | GTCTC | 1 cut(s) | 7 |
| BstMBI | GATC | 2 cut(s) | 135, 181 |
| BtsCI | GGATG | 1 cut(s) | 138 |
| BtsIMutI | CAGTG | 1 cut(s) | 206 |
| CviAII | CATG | 2 cut(s) | 187, 193 |
| CviJI | RGCY | 1 cut(s) | 214 |
| CviKI_1 | RGCY | 1 cut(s) | 214 |
| DdeI | CTNAG | 2 cut(s) | 11, 240 |
| DpnI | GATC | 2 cut(s) | 137, 183 |
| DpnII | GATC | 2 cut(s) | 135, 181 |
| Eco31I | GGTCTC | 1 cut(s) | 7 |
| FaeI | CATG | 2 cut(s) | 190, 196 |
| FaiI | YATR | 4 cut(s) | 41, 188, 194, 253 |
| FatI | CATG | 2 cut(s) | 186, 192 |
| FbaI | TGATCA | 1 cut(s) | 135 |
| FokI | GGATG | 1 cut(s) | 145 |
| FspBI | CTAG | 1 cut(s) | 201 |
| GsuI | CTGGAG | 1 cut(s) | 230 |
| Hin1II | CATG | 2 cut(s) | 190, 196 |
| HphI | GGTGA | 1 cut(s) | 40 |
| Hpy188I | TCNGA | 1 cut(s) | 181 |
| Hpy188III | TCNNGA | 2 cut(s) | 201, 232 |
| Hpy99I | CGWCG | 1 cut(s) | 56 |
| HpyAV | CCTTC | 1 cut(s) | 27 |
| HpyF3I | CTNAG | 2 cut(s) | 11, 240 |
| Hsp92II | CATG | 2 cut(s) | 190, 196 |
| Ksp22I | TGATCA | 1 cut(s) | 135 |
| Kzo9I | GATC | 2 cut(s) | 135, 181 |
| LmnI | GCTCC | 1 cut(s) | 211 |
| LpnPI | CCDG | 2 cut(s) | 124, 194 |
| MaeI | CTAG | 1 cut(s) | 201 |
| MalI | GATC | 2 cut(s) | 137, 183 |
| MboI | GATC | 2 cut(s) | 135, 181 |
| MboII | GAAGA | 1 cut(s) | 47 |
| MmeI | TCCRAC | 1 cut(s) | 246 |
| MnlI | CCTC | 4 cut(s) | 106, 109, 236, 239 |
| MseI | TTAA | 1 cut(s) | 30 |
| MslI | CAYNNNNRTG | 1 cut(s) | 191 |
| NdeII | GATC | 2 cut(s) | 135, 181 |
| NlaIII | CATG | 2 cut(s) | 190, 196 |
| NlaIV | GGNNCC | 2 cut(s) | 72, 178 |
| PspN4I | GGNNCC | 2 cut(s) | 72, 178 |
| RseI | CAYNNNNRTG | 1 cut(s) | 191 |
| SaqAI | TTAA | 1 cut(s) | 30 |
| Sau3AI | GATC | 2 cut(s) | 135, 181 |
| SetI | ASST | 4 cut(s) | 19, 105, 216, 228 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 191 |
| SmlI | CTYRAG | 1 cut(s) | 230 |
| SmoI | CTYRAG | 1 cut(s) | 230 |
| SspI | AATATT | 1 cut(s) | 248 |
| SspMI | CTAG | 1 cut(s) | 201 |
| Tru1I | TTAA | 1 cut(s) | 30 |
| Tru9I | TTAA | 1 cut(s) | 30 |
| TscAI | CASTG | 1 cut(s) | 213 |
| TspDTI | ATGAA | 4 cut(s) | 48, 73, 171, 240 |
| TspGWI | ACGGA | 1 cut(s) | 78 |
| TspRI | CASTG | 1 cut(s) | 213 |
| XbaI | TCTAGA | 1 cut(s) | 200 |
| XspI | CTAG | 1 cut(s) | 201 |