Rh2AG216400

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016722
Physical Location & Seq
Forward (+)
22072931 .. 22073356
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG216400.1

Sequence Viewer

Length: 426 bp
ATGGAGCACATTCTTTCAAGATACAACAAGGAGCGTGCCGCCGGCTCTTCGATGGAGTCTCCAGAAAATAAGAGCCAACATGAGCCGAGTTCATCATCCGATAGTTTGAGTGCAATAGGGCTACTGCAGGAAGAAATTAGAGCCCTAAACTTGGATTGCTCGAGATTGACGGGTACGGAGTTGGATGGCATGAGCTTGAGAGAGCTGAATGAGCTAGAGAAAAAAATAAGGGAAGGGATCGAATCAGTTGAGAAAAGGAAGAATGAAGTGCAAAACTACTACCAGCCCTCGTATATGCTTGAAGATTCAAACCGTTTGGATGGGAATAATAGCAATTTTTTCTCTGGTACAAGCTCAAGTGCCGTTTCAGGTTGTACTGAATCAGAGCAAAGTAAACAGTTTGTAGATACTTGTTTGCACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

141

Amino Acids

15.79

Weight (kDa)

4.83

Isoelectric Point (pI)

74.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 39 - 90 8e-08 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016722)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02960 FvH4_1g18960
rosa_chinensis RchiOBHm_Chr2g0109981
rosa_laevigata RLG00000017775
rosa_multiflora Rmu_sc0001870.1_g000005 Rmu_sc0004650.1_g000002
rosa_roxburghii Rroxscaffold_2G00133810
rosa_rugosa Rorug02G0162700 Rorug02G0164900
rosa_samantha Rh2AG216400 Rh2BG226500 Rh2CG218600 Rh2DG222000
rosa_wichuraiana Rw2G016720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AclWI GGATC 1 cut(s) 245
AfaI GTAC 3 cut(s) 175, 349, 376
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 3 cut(s) 18, 302, 309
AluBI AGCT 4 cut(s) 195, 205, 214, 354
AluI AGCT 4 cut(s) 195, 205, 214, 354
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 160
BanII GRGCYC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 3 cut(s) 46, 179, 314
BceAI ACGGC 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 125
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 45
BpuEI CTTGAG 2 cut(s) 217, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 41
BseGI GGATG 3 cut(s) 95, 190, 325
BseLI CCNNNNNNNGG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 160
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 160
Bsp1286I GDGCHC 2 cut(s) 9, 145
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 41
BssMI GATC 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 314, 399
Bst6I CTCTTC 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 36, 43
BstF5I GGATG 3 cut(s) 95, 190, 325
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 125
BtsCI GGATG 3 cut(s) 95, 190, 325
Cac8I GCNNGC 2 cut(s) 36, 43
Cfr10I RCCGGY 1 cut(s) 41
Csp6I GTAC 3 cut(s) 174, 348, 375
CviAII CATG 2 cut(s) 80, 190
CviQI GTAC 3 cut(s) 174, 348, 375
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 2 cut(s) 83, 193
FaiI YATR 4 cut(s) 81, 191, 294, 296
FatI CATG 2 cut(s) 79, 189
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 3 cut(s) 82, 197, 332
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 215
GluI GCNGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 45
HapII CCGG 1 cut(s) 42
Hin1II CATG 2 cut(s) 83, 193
HinfI GANTC 4 cut(s) 56, 242, 305, 380
HpaII CCGG 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 2 cut(s) 100, 385
Hpy188III TCNNGA 3 cut(s) 18, 62, 162
Hpy8I GTNNAC 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 2 cut(s) 314, 399
HpyCH4V TGCA 4 cut(s) 113, 127, 271, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
Hsp92II CATG 2 cut(s) 83, 193
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Kzo9I GATC 1 cut(s) 237
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 2 cut(s) 4, 31
LpnPI CCDG 6 cut(s) 55, 75, 113, 296, 330, 354
MaeI CTAG 1 cut(s) 215
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 4 cut(s) 39, 143, 271, 314
MhlI GDGCHC 2 cut(s) 9, 145
MluCI AATT 2 cut(s) 135, 334
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 1 cut(s) 298
MroNI GCCGGC 1 cut(s) 41
MspI CCGG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 211
NaeI GCCGGC 1 cut(s) 43
NdeII GATC 1 cut(s) 237
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 83, 193
NmeAIII GCCGAG 1 cut(s) 111
PaeR7I CTCGAG 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 3 cut(s) 242, 305, 380
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PstI CTGCAG 1 cut(s) 129
RsaI GTAC 3 cut(s) 175, 349, 376
RsaNI GTAC 3 cut(s) 174, 348, 375
SapI GCTCTTC 1 cut(s) 52
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 237
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 2 cut(s) 9, 145
SetI ASST 5 cut(s) 197, 207, 216, 356, 373
SfcI CTRYAG 1 cut(s) 125
Sfr274I CTCGAG 1 cut(s) 160
SlaI CTCGAG 1 cut(s) 160
SmlI CTYRAG 3 cut(s) 160, 196, 355
SmoI CTYRAG 3 cut(s) 160, 196, 355
Sse9I AATT 2 cut(s) 135, 334
SsiI CCGC 1 cut(s) 39
SspMI CTAG 1 cut(s) 215
TaaI ACNGT 2 cut(s) 314, 399
TaqI TCGA 3 cut(s) 50, 161, 240
TasI AATT 2 cut(s) 135, 334
TatI WGTACW 1 cut(s) 374
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 3 cut(s) 242, 305, 380
TspDTI ATGAA 2 cut(s) 81, 279
TspGWI ACGGA 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 160
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.