FvH4_1g18960

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016722
Physical Location & Seq
Forward (+)
11245833 .. 11246734
902 bp
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UTR
Exon/CDS
Intron
FvH4_1g18960.t1

Sequence Viewer

Length: 612 bp
ATGGCCATGACCACTTGTCCAAGAAGAACCAAGATCGAGAAGATCCAACATCTTAGTAGCAGGCAAGTCACCTTCTCCAAACGCCGAAAGGGGTTGGTTAACAAGGCATATGATTTTTCAGTTCGATGTGACGCAAAGGTTGCAGTCATAGTTTTCTCCAACACCAAAAAGCTGTACGAGTACTTCTCAAGCCCCAGCATGGAGAGATACATGAAGGAACGTGCCTGCGGCTCCGTAATGGAGTCTGCAGAAAAGAAGAGCCAACATGGGGAGCCGAGTTCATCATCTGATAGTTTGAGTGCAATAGCAGCGGTAATGCAGGAAGAAATTAAAGCCCTAAACTTGGATCGCTCGAGGTTGAAGGGTATGGAGTTGGATGGCATGAGTTTGAGAGAGCTGCATGAGCTAGAAAAACAAATAAGGGAAGGGATAGAATCAGTTGAGAAAAAGAAGATTGACGAGCGCGCTGTATACATGCTTGAAGATTCAGATTCAGATCGTGTGGATGGGAATTATAGCAATTTTTTCTCTGGAACAAGCTCAAGTGCCGTCTCAGATTGCATTGAATCAGAGCTAAGTGAACAGTTTATAGATACTTGTTTGCACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

204

Amino Acids

23.01

Weight (kDa)

6.15

Isoelectric Point (pI)

58.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 14 - 61 2.1e-20 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 95 - 151 6.2e-07 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016722)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02960 FvH4_1g18960
rosa_chinensis RchiOBHm_Chr2g0109981
rosa_laevigata RLG00000017775
rosa_multiflora Rmu_sc0001870.1_g000005 Rmu_sc0004650.1_g000002
rosa_roxburghii Rroxscaffold_2G00133810
rosa_rugosa Rorug02G0162700 Rorug02G0164900
rosa_samantha Rh2AG216400 Rh2BG226500 Rh2CG218600 Rh2DG222000
rosa_wichuraiana Rw2G016720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 471
AccII CGCG 1 cut(s) 465
AciI CCGC 2 cut(s) 228, 311
AclWI GGATC 2 cut(s) 37, 354
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 176, 182
AfiI CCNNNNNNNGG 3 cut(s) 199, 268, 343
AgsI TTSAA 3 cut(s) 361, 482, 566
AhdI GACNNNNNGTC 1 cut(s) 15
AluBI AGCT 5 cut(s) 172, 397, 406, 540, 574
AluI AGCT 5 cut(s) 172, 397, 406, 540, 574
Alw26I GTCTC 1 cut(s) 556
AlwI GGATC 2 cut(s) 37, 354
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 308, 397
AspLEI GCGC 2 cut(s) 465, 467
AsuHPI GGTGA 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 352
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BbvI GCAGC 2 cut(s) 320, 384
BccI CCATC 2 cut(s) 371, 500
BceAI ACGGC 1 cut(s) 533
BcoDI GTCTC 1 cut(s) 556
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 3 cut(s) 229, 309, 398
BlsI GCNGC 3 cut(s) 230, 310, 399
BmcAI AGTACT 1 cut(s) 182
BmeRI GACNNNNNGTC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 232, 273
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpuEI CTTGAG 2 cut(s) 172, 526
BsaBI GATNNNNATC 1 cut(s) 495
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 268, 343
Bse8I GATNNNNATC 1 cut(s) 495
BseGI GGATG 2 cut(s) 382, 511
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 3 cut(s) 199, 268, 343
BseMII CTCAG 1 cut(s) 567
BsePI GCGCGC 1 cut(s) 463
BseXI GCAGC 2 cut(s) 320, 384
BseYI CCCAGC 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 352
BslI CCNNNNNNNGG 3 cut(s) 199, 268, 343
BsmAI GTCTC 1 cut(s) 556
BsmBI CGTCTC 1 cut(s) 556
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 352
Bsp143I GATC 4 cut(s) 33, 42, 346, 496
BspACI CCGC 2 cut(s) 228, 311
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 566
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 2 cut(s) 232, 273
BspMAI CTGCAG 1 cut(s) 250
BspPI GGATC 2 cut(s) 37, 354
BspQI GCTCTTC 1 cut(s) 251
BssHII GCGCGC 1 cut(s) 463
BssMI GATC 4 cut(s) 33, 42, 346, 496
BssNAI GTATAC 1 cut(s) 472
Bst1107I GTATAC 1 cut(s) 472
Bst4CI ACNGT 1 cut(s) 585
Bst6I CTCTTC 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 62, 226, 465
BstDEI CTNAG 3 cut(s) 53, 553, 575
BstF5I GGATG 2 cut(s) 382, 511
BstFNI CGCG 1 cut(s) 465
BstHHI GCGC 2 cut(s) 465, 467
BstKTI GATC 4 cut(s) 36, 45, 349, 499
BstMAI GTCTC 1 cut(s) 556
BstMBI GATC 4 cut(s) 33, 42, 346, 496
BstMWI GCNNNNNNNGC 3 cut(s) 140, 308, 403
BstNSI RCATGY 1 cut(s) 478
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 320, 384
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BstZ17I GTATAC 1 cut(s) 472
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 382, 511
Cac8I GCNNGC 3 cut(s) 62, 226, 465
CfoI GCGC 2 cut(s) 465, 467
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 175, 181
CviAII CATG 7 cut(s) 7, 199, 211, 266, 382, 401, 475
CviQI GTAC 2 cut(s) 175, 181
DdeI CTNAG 3 cut(s) 53, 553, 575
DpnI GATC 4 cut(s) 35, 44, 348, 498
DpnII GATC 4 cut(s) 33, 42, 346, 496
DriI GACNNNNNGTC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 251
Eam1105I GACNNNNNGTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 352
Esp3I CGTCTC 1 cut(s) 556
FaeI CATG 7 cut(s) 10, 202, 214, 269, 385, 404, 478
FatI CATG 7 cut(s) 6, 198, 210, 265, 381, 400, 474
FauNDI CATATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 471
Fnu4HI GCNGC 3 cut(s) 229, 309, 398
FokI GGATG 2 cut(s) 389, 518
Fsp4HI GCNGC 3 cut(s) 229, 309, 398
FspBI CTAG 1 cut(s) 407
GlaI GCGC 2 cut(s) 464, 466
GluI GCNGC 3 cut(s) 229, 309, 398
GsaI CCCAGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 140
HhaI GCGC 2 cut(s) 465, 467
Hin1II CATG 7 cut(s) 10, 202, 214, 269, 385, 404, 478
Hin6I GCGC 2 cut(s) 463, 465
HinP1I GCGC 2 cut(s) 463, 465
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 5 cut(s) 242, 434, 485, 491, 566
HpaI GTTAAC 1 cut(s) 100
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 3 cut(s) 100, 472, 581
Hpy188I TCNGA 5 cut(s) 289, 490, 496, 556, 571
Hpy188III TCNNGA 2 cut(s) 37, 531
Hpy8I GTNNAC 3 cut(s) 100, 472, 581
HpyAV CCTTC 4 cut(s) 82, 208, 355, 419
HpyCH4III ACNGT 1 cut(s) 585
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 7 cut(s) 143, 248, 302, 319, 400, 561, 604
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 308, 403
HpyF3I CTNAG 3 cut(s) 53, 553, 575
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 7 cut(s) 10, 202, 214, 269, 385, 404, 478
HspAI GCGC 2 cut(s) 463, 465
KspAI GTTAAC 1 cut(s) 100
Kzo9I GATC 4 cut(s) 33, 42, 346, 496
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 236, 271
LpnPI CCDG 5 cut(s) 46, 208, 238, 305, 516
Lsp1109I GCAGC 2 cut(s) 320, 384
MaeI CTAG 1 cut(s) 407
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 2 cut(s) 67, 128
MalI GATC 4 cut(s) 35, 44, 348, 498
MboI GATC 4 cut(s) 33, 42, 346, 496
MboII GAAGA 6 cut(s) 36, 52, 268, 335, 463, 494
MflI RGATCY 1 cut(s) 42
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 327, 511, 520
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 3 cut(s) 70, 183, 354
MnlI CCTC 1 cut(s) 348
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 99, 330
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 311
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 3 cut(s) 140, 308, 403
NdeI CATATG 1 cut(s) 109
NdeII GATC 4 cut(s) 33, 42, 346, 496
NlaIII CATG 7 cut(s) 10, 202, 214, 269, 385, 404, 478
NlaIV GGNNCC 2 cut(s) 232, 273
NmeAIII GCCGAG 1 cut(s) 300
NmuCI GTSAC 2 cut(s) 67, 128
NspI RCATGY 1 cut(s) 478
PaeR7I CTCGAG 1 cut(s) 352
PauI GCGCGC 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 251
PfeI GAWTC 4 cut(s) 434, 485, 491, 566
PkrI GCNGC 3 cut(s) 230, 310, 399
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 232, 273
PspXI VCTCGAGB 1 cut(s) 352
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 42
PteI GCGCGC 1 cut(s) 463
RsaI GTAC 2 cut(s) 176, 182
RsaNI GTAC 2 cut(s) 175, 181
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 2 cut(s) 99, 330
SatI GCNGC 3 cut(s) 229, 309, 398
Sau3AI GATC 4 cut(s) 33, 42, 346, 496
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 1 cut(s) 251
SetI ASST 9 cut(s) 74, 141, 174, 223, 359, 399, 408, 542, 576
SfcI CTRYAG 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 352
SlaI CTCGAG 1 cut(s) 352
SmlI CTYRAG 3 cut(s) 187, 352, 541
SmoI CTYRAG 3 cut(s) 187, 352, 541
Sse9I AATT 3 cut(s) 327, 511, 520
SsiI CCGC 2 cut(s) 228, 311
SspMI CTAG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 585
TaiI ACGT 1 cut(s) 223
TaqI TCGA 3 cut(s) 36, 124, 353
TasI AATT 3 cut(s) 327, 511, 520
TatI WGTACW 1 cut(s) 180
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 4 cut(s) 434, 485, 491, 566
Tru1I TTAA 2 cut(s) 99, 330
Tru9I TTAA 2 cut(s) 99, 330
TseFI GTSAC 2 cut(s) 67, 128
TseI GCWGC 2 cut(s) 308, 397
Tsp45I GTSAC 2 cut(s) 67, 128
TspDTI ATGAA 2 cut(s) 227, 270
TspGWI ACGGA 1 cut(s) 223
XceI RCATGY 1 cut(s) 478
XhoI CTCGAG 1 cut(s) 352
XmiI GTMKAC 1 cut(s) 471
XspI CTAG 1 cut(s) 407
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.