Rmu_sc0001870.1_g000005

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001870.1
OG0016722
Physical Location & Seq
Forward (+)
11332 .. 11949
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001870.1_g000005.1.cds

Sequence Viewer

Length: 618 bp
atggccatgtcaggtccaagaagaactaagatcgagaagatcgaacatctgagtagcaggcaagtcaccttctccaaacgccgcaaggggttgttcaacaaggcagaagattttgcacttcgatgtggcgcagagatcgcggtcatagttttctccaacaccaaaaggatgtacgagttctcaagcaccagcatggagcacattcttttaagatacaacaaggagagtgcagccggctcttcgatggagtctccagaaaataagagtcaacatgagccgagttcatcatccgatagtttgagtgcaatagggctactgcaggaagaaattagagccctaaacttggattgctcgagattgacgggtacggagttggatggcatgagtttgagagaactgaatgagctagagaaaaaaataagggaagggatcgaatcagttgagaaaaggaagaatgaagtgcaaaactactaccagccctcgtatatgcttgaatattcaaaccgtttggatgggaataatagcaattttttctctggtacaagctcaagtgccgtttcaggttgtactgaatcagagcaaagtaaacagtttgtagatacttgtttgcacctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

205

Amino Acids

23.12

Weight (kDa)

6.14

Isoelectric Point (pI)

74.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016722)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02960 FvH4_1g18960
rosa_chinensis RchiOBHm_Chr2g0109981
rosa_laevigata RLG00000017775
rosa_multiflora Rmu_sc0001870.1_g000005 Rmu_sc0004650.1_g000002
rosa_roxburghii Rroxscaffold_2G00133810
rosa_rugosa Rorug02G0162700 Rorug02G0164900
rosa_samantha Rh2AG216400 Rh2BG226500 Rh2CG218600 Rh2DG222000
rosa_wichuraiana Rw2G016720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 140
AciI CCGC 2 cut(s) 82, 140
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 4 cut(s) 173, 367, 541, 568
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 3 cut(s) 97, 494, 501
AluBI AGCT 2 cut(s) 406, 546
AluI AGCT 2 cut(s) 406, 546
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 1 cut(s) 14
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 242
BccI CCATC 3 cut(s) 238, 371, 506
BceAI ACGGC 1 cut(s) 539
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 317
BisI GCNGC 2 cut(s) 82, 231
BlsI GCNGC 2 cut(s) 83, 232
Bme18I GGWCC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 237
BpuEI CTTGAG 2 cut(s) 166, 532
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse118I RCCGGY 1 cut(s) 233
BseGI GGATG 4 cut(s) 174, 287, 382, 517
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 249
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 2 cut(s) 201, 337
Bsp143I GATC 4 cut(s) 30, 39, 135, 429
BspACI CCGC 2 cut(s) 82, 140
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 42
BspFNI CGCG 1 cut(s) 140
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 1 cut(s) 437
BspQI GCTCTTC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 233
BssMI GATC 4 cut(s) 30, 39, 135, 429
Bst4CI ACNGT 2 cut(s) 506, 591
Bst6I CTCTTC 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 59, 235
BstDEI CTNAG 2 cut(s) 27, 50
BstF5I GGATG 4 cut(s) 174, 287, 382, 517
BstFNI CGCG 1 cut(s) 140
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 4 cut(s) 33, 42, 138, 432
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 4 cut(s) 30, 39, 135, 429
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 317
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 242
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 4 cut(s) 174, 287, 382, 517
Cac8I GCNNGC 2 cut(s) 59, 235
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 4 cut(s) 172, 366, 540, 567
CviAII CATG 4 cut(s) 7, 193, 272, 382
CviJI RGCY 9 cut(s) 5, 233, 237, 277, 313, 335, 406, 478, 546
CviKI_1 RGCY 9 cut(s) 5, 233, 237, 277, 313, 335, 406, 478, 546
CviQI GTAC 4 cut(s) 172, 366, 540, 567
DdeI CTNAG 2 cut(s) 27, 50
DpnI GATC 4 cut(s) 32, 41, 137, 431
DpnII GATC 4 cut(s) 30, 39, 135, 429
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 14
Eco88I CYCGRG 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 337
FaeI CATG 4 cut(s) 10, 196, 275, 385
FaiI YATR 7 cut(s) 8, 146, 194, 273, 383, 486, 488
FatI CATG 4 cut(s) 6, 192, 271, 381
Fnu4HI GCNGC 2 cut(s) 82, 231
FokI GGATG 4 cut(s) 181, 274, 389, 524
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 2 cut(s) 82, 231
FspBI CTAG 1 cut(s) 407
GlaI GCGC 1 cut(s) 130
GluI GCNGC 2 cut(s) 82, 231
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 234
HhaI GCGC 1 cut(s) 131
Hin1II CATG 4 cut(s) 10, 196, 275, 385
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HinfI GANTC 4 cut(s) 248, 265, 434, 572
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 269, 587
Hpy188I TCNGA 3 cut(s) 51, 292, 577
Hpy188III TCNNGA 3 cut(s) 34, 254, 354
Hpy8I GTNNAC 2 cut(s) 269, 587
HpyAV CCTTC 2 cut(s) 79, 419
HpyCH4III ACNGT 2 cut(s) 506, 591
HpyCH4V TGCA 6 cut(s) 116, 230, 305, 319, 463, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 27, 50
Hsp92II CATG 4 cut(s) 10, 196, 275, 385
HspAI GCGC 1 cut(s) 129
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Kzo9I GATC 4 cut(s) 30, 39, 135, 429
LguI GCTCTTC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 8 cut(s) 43, 202, 247, 267, 305, 488, 522, 546
Lsp1109I GCAGC 1 cut(s) 242
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 64
MalI GATC 4 cut(s) 32, 41, 137, 431
MboI GATC 4 cut(s) 30, 39, 135, 429
MboII GAAGA 6 cut(s) 33, 49, 119, 231, 335, 463
MhlI GDGCHC 2 cut(s) 201, 337
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 327, 526
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 257, 274
MmeI TCCRAC 2 cut(s) 180, 354
MnlI CCTC 1 cut(s) 490
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 233
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 2 cut(s) 121, 191
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 137
NaeI GCCGGC 1 cut(s) 235
NdeII GATC 4 cut(s) 30, 39, 135, 429
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 4 cut(s) 10, 196, 275, 385
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 64
PaeR7I CTCGAG 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdiI GCCGGC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 434, 572
PkrI GCNGC 2 cut(s) 83, 232
PleI GAGTC 2 cut(s) 256, 273
PpsI GAGTC 2 cut(s) 256, 273
PspPI GGNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 321
RsaI GTAC 4 cut(s) 173, 367, 541, 568
RsaNI GTAC 4 cut(s) 172, 366, 540, 567
RseI CAYNNNNRTG 2 cut(s) 121, 191
SapI GCTCTTC 1 cut(s) 244
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 2 cut(s) 82, 231
Sau3AI GATC 4 cut(s) 30, 39, 135, 429
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 2 cut(s) 257, 274
SduI GDGCHC 2 cut(s) 201, 337
SetI ASST 6 cut(s) 16, 71, 408, 548, 565, 615
SfcI CTRYAG 1 cut(s) 317
Sfr274I CTCGAG 1 cut(s) 352
SinI GGWCC 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 352
SmiMI CAYNNNNRTG 2 cut(s) 121, 191
SmlI CTYRAG 3 cut(s) 181, 352, 547
SmoI CTYRAG 3 cut(s) 181, 352, 547
Sse9I AATT 2 cut(s) 327, 526
SsiI CCGC 2 cut(s) 82, 140
SspI AATATT 1 cut(s) 497
SspMI CTAG 1 cut(s) 407
TaaI ACNGT 2 cut(s) 506, 591
TaqI TCGA 6 cut(s) 33, 42, 121, 242, 353, 432
TasI AATT 2 cut(s) 327, 526
TatI WGTACW 1 cut(s) 566
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 2 cut(s) 434, 572
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 273, 471
TspGWI ACGGA 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 14
XhoI CTCGAG 1 cut(s) 352
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.