FvH4_1g03270

Protein of unknown function (DUF3119)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017568
Physical Location & Seq
Forward (+)
1810689 .. 1812463
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03270.t1

Sequence Viewer

Length: 615 bp
ATGGCAAGCGCTCTCTTGTCATCTCCTTGTTTTCTCTCTCCAAAACATAAAGAACTTGGTGGGTTTGTTAGCAGCTTCAGGAGTCTTGGTAATGGCAATCTGTTACATGATCATAGTTTGCTGAGGAAAAAGTATGGTGGCTCACTTGTGGTGACCTCAGTGTCTGGAAGGAAAGTCAAGACCACCAGAGAGACTGTGATACCTGAGCCAGATTACCGGATTCCAATTGTGCTACTTGGTCTATCTGGTGGATTAGCTTATACAAACAATCTTTTACCAGCTGCGCCTGTTGGTCTCCTTGGATTACTCTTATTGTTTCAGACTACTAGAGTTAGATTTGTCTTCGATGAGGAGGCTCTGGAAGTAAAAGTAGGGGAGGAGCTTGAGAATTCGGGTGAGAATGTCTTCGTGGGTGGTAAAAACCGTTGGAAATACTCATCATTTGTGAACTGGGAGCTTTGGTGGCCAAATTTTCCCATTCTGGTATATTTCAAAGAGACTCAAACAAAGCCAGAAGGACAAGTCCACTTCTTTCCTGTGATATTTAATGGGAAGCAACTGTATGATATCATGGTGGAGAGAGCTGGCCCTTCCCAAACCAGTGGGCCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3119

Protein Analysis

205

Amino Acids

22.7

Weight (kDa)

9.16

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3119 PF11317 67 - 194 7.6e-35 Protein of unknown function (DUF3119)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017568)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03270
malus_domestica MD02G1032500.v1.1
prunus_persica Prupe.7G243000_v2.0.a1 Prupe.7G243000_v2.0.a1
pyrus_communis pycom02g02670
rosa_chinensis RchiOBHm_Chr2g0088411
rosa_laevigata RLG00000015951
rosa_multiflora Rmu_sc0004235.1_g000002
rosa_roxburghii Rroxscaffold_2G00152690
rosa_rugosa Rorug01G0483900
rosa_samantha Rh2DG038500
rosa_wichuraiana Rw2G003050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 160
AcoI YGGCCR 1 cut(s) 464
AcsI RAATTY 2 cut(s) 388, 469
AcuI CTGAAG 1 cut(s) 61
AfeI AGCGCT 1 cut(s) 10
AgsI TTSAA 1 cut(s) 493
AluBI AGCT 6 cut(s) 75, 257, 281, 382, 457, 584
AluI AGCT 6 cut(s) 75, 257, 281, 382, 457, 584
Alw26I GTCTC 3 cut(s) 185, 299, 491
AlwNI CAGNNNCTG 1 cut(s) 164
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 3 cut(s) 464, 586, 605
ApeKI GCWGC 2 cut(s) 72, 281
ApoI RAATTY 2 cut(s) 388, 469
Asp700I GAANNNNTTC 1 cut(s) 404
AspLEI GCGC 2 cut(s) 11, 286
AspS9I GGNCC 2 cut(s) 587, 605
AsuHPI GGTGA 2 cut(s) 163, 407
BalI TGGCCA 1 cut(s) 466
BbsI GAAGAC 2 cut(s) 334, 397
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 84, 268
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 3 cut(s) 185, 299, 491
BfaI CTAG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 2 cut(s) 73, 282
BlsI GCNGC 2 cut(s) 74, 283
BmgT120I GGNCC 2 cut(s) 587, 605
BmrI ACTGGG 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 460
BpiI GAAGAC 2 cut(s) 334, 397
Bpu10I CCTNAGC 2 cut(s) 122, 204
BpuEI CTTGAG 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 298
BsaWI WCCGGW 1 cut(s) 216
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 446, 476
Bse1I ACTGG 2 cut(s) 455, 600
BseDI CCNNGG 1 cut(s) 298
BseMII CTCAG 3 cut(s) 113, 171, 195
BseNI ACTGG 2 cut(s) 455, 600
BseRI GAGGAG 2 cut(s) 365, 392
BseXI GCAGC 2 cut(s) 84, 268
BshFI GGCC 3 cut(s) 466, 588, 607
BsiSI CCGG 1 cut(s) 217
BsmAI GTCTC 3 cut(s) 185, 299, 491
BsnI GGCC 3 cut(s) 466, 588, 607
Bso31I GGTCTC 1 cut(s) 299
Bsp143I GATC 1 cut(s) 109
BspANI GGCC 3 cut(s) 466, 588, 607
BspCNI CTCAG 3 cut(s) 114, 170, 196
BspTNI GGTCTC 1 cut(s) 299
BsrI ACTGG 2 cut(s) 455, 600
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 298
Bst4CI ACNGT 3 cut(s) 196, 425, 561
BstC8I GCNNGC 2 cut(s) 7, 586
BstDEI CTNAG 3 cut(s) 122, 157, 204
BstEII GGTNACC 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 286
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 3 cut(s) 185, 299, 491
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 463
BstPI GGTNACC 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 84, 268
BstV2I GAAGAC 2 cut(s) 334, 397
BstXI CCANNNNNNTGG 1 cut(s) 602
BsuRI GGCC 3 cut(s) 466, 588, 607
BtsIMutI CAGTG 2 cut(s) 165, 607
Cac8I GCNNGC 2 cut(s) 7, 586
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 2 cut(s) 11, 286
Cfr13I GGNCC 2 cut(s) 587, 605
CviAII CATG 2 cut(s) 107, 571
DdeI CTNAG 3 cut(s) 122, 157, 204
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 298
Eco31I GGTCTC 1 cut(s) 299
Eco32I GATATC 1 cut(s) 568
Eco47III AGCGCT 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 61
Eco91I GGTNACC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 388
EcoRV GATATC 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 2 cut(s) 110, 574
FaiI YATR 8 cut(s) 48, 108, 114, 135, 261, 487, 564, 572
FatI CATG 2 cut(s) 106, 570
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 73, 282
Fsp4HI GCNGC 2 cut(s) 73, 282
FspBI CTAG 1 cut(s) 327
GlaI GCGC 2 cut(s) 10, 285
GluI GCNGC 2 cut(s) 73, 282
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 3 cut(s) 466, 588, 607
HapII CCGG 1 cut(s) 217
HhaI GCGC 2 cut(s) 11, 286
Hin1II CATG 2 cut(s) 110, 574
Hin6I GCGC 2 cut(s) 9, 284
HinP1I GCGC 2 cut(s) 9, 284
HinfI GANTC 3 cut(s) 82, 220, 499
HpaII CCGG 1 cut(s) 217
HphI GGTGA 2 cut(s) 163, 407
Hpy166II GTNNAC 2 cut(s) 448, 526
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 4 cut(s) 79, 165, 178, 359
Hpy8I GTNNAC 2 cut(s) 448, 526
HpyAV CCTTC 3 cut(s) 162, 509, 600
HpyCH4III ACNGT 3 cut(s) 196, 425, 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 463
HpyF3I CTNAG 3 cut(s) 122, 157, 204
Hsp92II CATG 2 cut(s) 110, 574
HspAI GCGC 2 cut(s) 9, 284
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 379, 454
Lsp1109I GCAGC 2 cut(s) 84, 268
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 2 cut(s) 102, 151
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 2 cut(s) 334, 397
MfeI CAATTG 1 cut(s) 225
MlsI TGGCCA 1 cut(s) 466
MluCI AATT 3 cut(s) 225, 388, 469
MluNI TGGCCA 1 cut(s) 466
MlyI GAGTC 2 cut(s) 91, 493
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 5 cut(s) 117, 166, 343, 346, 370
Mox20I TGGCCA 1 cut(s) 466
MroXI GAANNNNTTC 1 cut(s) 404
MscI TGGCCA 1 cut(s) 466
MseI TTAA 1 cut(s) 546
Msp20I TGGCCA 1 cut(s) 466
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 217
MunI CAATTG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 463
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 110, 574
NmuCI GTSAC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 74, 283
PleI GAGTC 2 cut(s) 90, 493
PpsI GAGTC 2 cut(s) 90, 493
PspEI GGTNACC 1 cut(s) 151
PspPI GGNCC 2 cut(s) 587, 605
PstNI CAGNNNCTG 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 281
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 2 cut(s) 73, 282
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 2 cut(s) 587, 605
SchI GAGTC 2 cut(s) 91, 493
SetI ASST 8 cut(s) 77, 158, 205, 259, 283, 384, 459, 586
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 3 cut(s) 225, 388, 469
SspMI CTAG 1 cut(s) 327
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 3 cut(s) 196, 425, 561
TaqI TCGA 1 cut(s) 345
TasI AATT 3 cut(s) 225, 388, 469
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 2 cut(s) 165, 607
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 72, 281
Tsp45I GTSAC 1 cut(s) 151
TspRI CASTG 2 cut(s) 165, 607
XapI RAATTY 2 cut(s) 388, 469
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.