Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004235.1

Orthogroup ID

OG0017568

Physical Location & Seq

Genomic Coordinates Reverse (-)

5490 .. 7549

Gene Structure 2060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004235.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggcaagcgctctcttgtcagctccttgttttctctctccaaaaaataaagaacttggtgggtttgtaagcagcttcaggagtcttaataatggcaatctattacataataatagtttgctgaggaaaaagtatggtggctcacttgtggtgacctcagtgtttggaaggaaagtcaagaccaccagagagactgtgatacctgagccagattaccggattccaattgtgttactaggtctatccggtggattagcctatacaaacaatcttttaccagctgcgcctgttggtctccttggattactcctattgtttcagactactagagttagatttgtcttcgatgaagaggctctggaagtaaaagtaggggaggagcttgagaattcgggtgaaaatgtcttcgtgggtggtaaaaaccgttggaaatactcatcatttgtgaactgggagctttggtggccaaatttccctattctggtgtatttcaaagagacgcaaacaaaacctgaagggcaagtgcatttctttccggtgatatttaatgggaagcaactttatgatatcatgttattgaattgtggatccgatagcaaagtcactactcttctgagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3119

Protein Analysis

206

Amino Acids

22.99

Weight (kDa)

9.06

Isoelectric Point (pI)

29.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017568)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g03270
malus_domestica	MD02G1032500.v1.1
prunus_persica	Prupe.7G243000_v2.0.a1 Prupe.7G243000_v2.0.a1
pyrus_communis	pycom02g02670
rosa_chinensis	RchiOBHm_Chr2g0088411
rosa_laevigata	RLG00000015951
rosa_multiflora	Rmu_sc0004235.1_g000002
rosa_roxburghii	Rroxscaffold_2G00152690
rosa_rugosa	Rorug01G0483900
rosa_samantha	Rh2DG038500
rosa_wichuraiana	Rw2G003050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	582, 595
AcoI	YGGCCR	1 cut(s)	464
AcsI	RAATTY	2 cut(s)	388, 469
AcuI	CTGAAG	2 cut(s)	61, 534
AfeI	AGCGCT	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	2 cut(s)	493, 580
AluBI	AGCT	5 cut(s)	23, 75, 281, 382, 457
AluI	AGCT	5 cut(s)	23, 75, 281, 382, 457
Alw26I	GTCTC	3 cut(s)	185, 299, 491
AlwI	GGATC	2 cut(s)	582, 595
Aor51HI	AGCGCT	1 cut(s)	10
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	2 cut(s)	72, 281
ApoI	RAATTY	2 cut(s)	388, 469
AspLEI	GCGC	2 cut(s)	11, 286
AsuHPI	GGTGA	3 cut(s)	163, 407, 550
BalI	TGGCCA	1 cut(s)	466
BamHI	GGATCC	1 cut(s)	587
BbsI	GAAGAC	2 cut(s)	334, 397
BbvCI	CCTCAGC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	84, 268
BcoDI	GTCTC	3 cut(s)	185, 299, 491
BfaI	CTAG	2 cut(s)	236, 327
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	2 cut(s)	73, 282
BlsI	GCNGC	2 cut(s)	74, 283
BmiI	GGNNCC	1 cut(s)	589
BmrI	ACTGGG	1 cut(s)	460
BmuI	ACTGGG	1 cut(s)	460
BpiI	GAAGAC	2 cut(s)	334, 397
Bpu10I	CCTNAGC	2 cut(s)	122, 204
BpuEI	CTTGAG	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	298
BsaWI	WCCGGW	3 cut(s)	216, 245, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMII	CTCAG	4 cut(s)	113, 171, 195, 605
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	84, 268
BshFI	GGCC	1 cut(s)	466
BsiSI	CCGG	3 cut(s)	217, 246, 536
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	3 cut(s)	185, 299, 491
BsmBI	CGTCTC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	466
Bso31I	GGTCTC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	587
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	4 cut(s)	114, 170, 196, 606
BspLI	GGNNCC	1 cut(s)	589
BspPI	GGATC	2 cut(s)	582, 595
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	587
BssT1I	CCWWGG	1 cut(s)	298
Bst4CI	ACNGT	2 cut(s)	196, 425
Bst6I	CTCTTC	2 cut(s)	345, 615
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	4 cut(s)	122, 157, 204, 614
BstEII	GGTNACC	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 286
BstKTI	GATC	1 cut(s)	590
BstMAI	GTCTC	3 cut(s)	185, 299, 491
BstMBI	GATC	1 cut(s)	587
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstPI	GGTNACC	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	84, 268
BstV2I	GAAGAC	2 cut(s)	334, 397
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuRI	GGCC	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	11, 286
CseI	GACGC	1 cut(s)	508
CviAII	CATG	1 cut(s)	571
DdeI	CTNAG	4 cut(s)	122, 157, 204, 614
DpnI	GATC	1 cut(s)	589
DpnII	GATC	1 cut(s)	587
EaeI	YGGCCR	1 cut(s)	464
Eam1104I	CTCTTC	2 cut(s)	345, 615
EarI	CTCTTC	2 cut(s)	345, 615
Eco130I	CCWWGG	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	299
Eco32I	GATATC	1 cut(s)	568
Eco47III	AGCGCT	1 cut(s)	10
Eco57I	CTGAAG	2 cut(s)	61, 534
Eco91I	GGTNACC	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	388
EcoRV	GATATC	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	1 cut(s)	574
FaiI	YATR	5 cut(s)	108, 135, 261, 564, 572
FatI	CATG	1 cut(s)	570
Fnu4HI	GCNGC	2 cut(s)	73, 282
Fsp4HI	GCNGC	2 cut(s)	73, 282
FspBI	CTAG	2 cut(s)	236, 327
GlaI	GCGC	2 cut(s)	10, 285
GluI	GCNGC	2 cut(s)	73, 282
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	466
HapII	CCGG	3 cut(s)	217, 246, 536
HgaI	GACGC	1 cut(s)	508
HhaI	GCGC	2 cut(s)	11, 286
Hin1II	CATG	1 cut(s)	574
Hin6I	GCGC	2 cut(s)	9, 284
HinP1I	GCGC	2 cut(s)	9, 284
HinfI	GANTC	2 cut(s)	82, 220
HpaII	CCGG	3 cut(s)	217, 246, 536
HphI	GGTGA	3 cut(s)	163, 407, 550
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	3 cut(s)	321, 592, 615
Hpy188III	TCNNGA	3 cut(s)	79, 178, 359
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	2 cut(s)	162, 509
HpyCH4III	ACNGT	2 cut(s)	196, 425
HpyCH4V	TGCA	1 cut(s)	526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	4 cut(s)	122, 157, 204, 614
Hsp92II	CATG	1 cut(s)	574
HspAI	GCGC	2 cut(s)	9, 284
Kzo9I	GATC	1 cut(s)	587
LmnI	GCTCC	3 cut(s)	28, 379, 454
Lsp1109I	GCAGC	2 cut(s)	84, 268
MaeI	CTAG	2 cut(s)	236, 327
MaeIII	GTNAC	3 cut(s)	151, 231, 601
MalI	GATC	1 cut(s)	589
MboI	GATC	1 cut(s)	587
MboII	GAAGA	4 cut(s)	334, 362, 397, 602
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	1 cut(s)	587
MlsI	TGGCCA	1 cut(s)	466
MluCI	AATT	4 cut(s)	225, 388, 469, 580
MluNI	TGGCCA	1 cut(s)	466
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	407
MnlI	CCTC	4 cut(s)	117, 166, 346, 370
Mox20I	TGGCCA	1 cut(s)	466
MscI	TGGCCA	1 cut(s)	466
MseI	TTAA	2 cut(s)	87, 546
Msp20I	TGGCCA	1 cut(s)	466
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	3 cut(s)	217, 246, 536
MunI	CAATTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	463
NdeII	GATC	1 cut(s)	587
NlaIII	CATG	1 cut(s)	574
NlaIV	GGNNCC	1 cut(s)	589
NmuCI	GTSAC	2 cut(s)	151, 601
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	74, 283
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PspEI	GGTNACC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	87, 546
SatI	GCNGC	2 cut(s)	73, 282
Sau3AI	GATC	1 cut(s)	587
SchI	GAGTC	1 cut(s)	91
SetI	ASST	9 cut(s)	25, 77, 158, 205, 241, 283, 384, 459, 514
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	4 cut(s)	225, 388, 469, 580
SspMI	CTAG	2 cut(s)	236, 327
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	196, 425
TaqI	TCGA	1 cut(s)	345
TasI	AATT	4 cut(s)	225, 388, 469, 580
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	87, 546
Tru9I	TTAA	2 cut(s)	87, 546
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	2 cut(s)	151, 601
TseI	GCWGC	2 cut(s)	72, 281
Tsp45I	GTSAC	2 cut(s)	151, 601
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	165
XapI	RAATTY	2 cut(s)	388, 469
XspI	CTAG	2 cut(s)	236, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.