RLG00000015951

Protein of unknown function (DUF3119)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017568
Physical Location & Seq
Forward (+)
2727112 .. 2729358
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015951

Sequence Viewer

Length: 714 bp
ATGGCAAGCGCTCTCTTGTCAGCTCCTTGTTTTCTCTCTCCAAAGAATAAAGAACTTGGTGGGTTTGTAAGCAGCTTCAGGAGTCTTAATAATGGCAATCTATTACATAATCATAGTTTGCTGAGGAAAAAGTATGGTGGCTCACTTGTGGTGACCTCAGTGTTTGGAAGGAAAGTCAAGACCACCAGAGAGACTGTGATACCTGAGCCGGATTACCGGATTCCAATTGTGTTACTAGGTCTATCCGGTGGATTAGCCTATACAAACAATCTTTTACCAGCTGCGCCTGTTGGTCTCCTTGGATTACTCCTATTGTTTCAGACTACTAGAGTTAGATTCGTCTTCGATGAAGAGGCTTTGGAAGTAAAAGTAGGGGAGGAGCTTGAGAATTCGGGTGAAAATGTCTTCGTGGGTGGTAAAAACCGTTGGAAATACTCATCATTTGTGAACTGGGAGCTTTGGTGGCCAAATTTCCCTATTCTGGTGTATTTCAAAGAGACGCAAACAAAACCTGAAGGGCAAGTGCATTTCTTTCCGGTGATATTTAATGGGAAGCAACTTTATGAGATCATGCAAAGTCACTACTCTTCTGAGGTGACGGCATTTTTTGGTGACTTAAATTTAGCATACCTTATTCTGGTGCCAGTCACCGGCTCAAACTTTGCCTGTATTCTTTTGAACATTCAATTCTATAAGATGTCTGTATATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3119

Protein Analysis

238

Amino Acids

26.67

Weight (kDa)

8.44

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3119 PF11317 67 - 194 8.2e-35 Protein of unknown function (DUF3119)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017568)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03270
malus_domestica MD02G1032500.v1.1
prunus_persica Prupe.7G243000_v2.0.a1 Prupe.7G243000_v2.0.a1
pyrus_communis pycom02g02670
rosa_chinensis RchiOBHm_Chr2g0088411
rosa_laevigata RLG00000015951
rosa_multiflora Rmu_sc0004235.1_g000002
rosa_roxburghii Rroxscaffold_2G00152690
rosa_rugosa Rorug01G0483900
rosa_samantha Rh2DG038500
rosa_wichuraiana Rw2G003050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 640
AcoI YGGCCR 1 cut(s) 464
AcsI RAATTY 3 cut(s) 388, 469, 619
AcuI CTGAAG 2 cut(s) 61, 534
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 3 cut(s) 481, 637, 650
AgsI TTSAA 3 cut(s) 493, 679, 686
AluBI AGCT 5 cut(s) 23, 75, 281, 382, 457
AluI AGCT 5 cut(s) 23, 75, 281, 382, 457
Alw26I GTCTC 3 cut(s) 185, 299, 491
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 1 cut(s) 464
ApeKI GCWGC 2 cut(s) 72, 281
ApoI RAATTY 3 cut(s) 388, 469, 619
AspLEI GCGC 2 cut(s) 11, 286
AsuHPI GGTGA 6 cut(s) 163, 407, 550, 607, 623, 640
BalI TGGCCA 1 cut(s) 466
BanI GGYRCC 1 cut(s) 640
BbsI GAAGAC 2 cut(s) 334, 397
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 84, 268
BceAI ACGGC 1 cut(s) 615
BcoDI GTCTC 3 cut(s) 185, 299, 491
BfaI CTAG 2 cut(s) 236, 327
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 2 cut(s) 73, 282
BlsI GCNGC 2 cut(s) 74, 283
BmiI GGNNCC 1 cut(s) 642
BmrI ACTGGG 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 460
BpiI GAAGAC 2 cut(s) 334, 397
Bpu10I CCTNAGC 2 cut(s) 122, 204
BpuEI CTTGAG 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 298
BsaWI WCCGGW 3 cut(s) 216, 245, 535
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 3 cut(s) 481, 637, 650
Bse118I RCCGGY 1 cut(s) 650
Bse1I ACTGG 2 cut(s) 455, 644
BseDI CCNNGG 1 cut(s) 298
BseLI CCNNNNNNNGG 3 cut(s) 481, 637, 650
BseMII CTCAG 4 cut(s) 113, 171, 195, 582
BseNI ACTGG 2 cut(s) 455, 644
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 84, 268
BshFI GGCC 1 cut(s) 466
BshNI GGYRCC 1 cut(s) 640
BsiSI CCGG 5 cut(s) 209, 217, 246, 536, 651
BslI CCNNNNNNNGG 3 cut(s) 481, 637, 650
BsmAI GTCTC 3 cut(s) 185, 299, 491
BsmBI CGTCTC 1 cut(s) 491
BsnI GGCC 1 cut(s) 466
Bso31I GGTCTC 1 cut(s) 299
Bsp143I GATC 1 cut(s) 567
BspANI GGCC 1 cut(s) 466
BspCNI CTCAG 4 cut(s) 114, 170, 196, 583
BspLI GGNNCC 1 cut(s) 642
BspT107I GGYRCC 1 cut(s) 640
BspTNI GGTCTC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 650
BsrI ACTGG 2 cut(s) 455, 644
BssAI RCCGGY 1 cut(s) 650
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 298
Bst4CI ACNGT 2 cut(s) 196, 425
Bst6I CTCTTC 2 cut(s) 345, 592
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 4 cut(s) 122, 157, 204, 591
BstEII GGTNACC 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 286
BstKTI GATC 1 cut(s) 570
BstMAI GTCTC 3 cut(s) 185, 299, 491
BstMBI GATC 1 cut(s) 567
BstMWI GCNNNNNNNGC 1 cut(s) 463
BstPI GGTNACC 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 84, 268
BstV2I GAAGAC 2 cut(s) 334, 397
BsuRI GGCC 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 2 cut(s) 11, 286
Cfr10I RCCGGY 1 cut(s) 650
CseI GACGC 1 cut(s) 508
CviAII CATG 1 cut(s) 571
DdeI CTNAG 4 cut(s) 122, 157, 204, 591
DpnI GATC 1 cut(s) 569
DpnII GATC 1 cut(s) 567
EaeI YGGCCR 1 cut(s) 464
Eam1104I CTCTTC 2 cut(s) 345, 592
EarI CTCTTC 2 cut(s) 345, 592
Eco130I CCWWGG 1 cut(s) 298
Eco31I GGTCTC 1 cut(s) 299
Eco47III AGCGCT 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 61, 534
Eco91I GGTNACC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 1 cut(s) 574
FatI CATG 1 cut(s) 570
Fnu4HI GCNGC 2 cut(s) 73, 282
Fsp4HI GCNGC 2 cut(s) 73, 282
FspBI CTAG 2 cut(s) 236, 327
GlaI GCGC 2 cut(s) 10, 285
GluI GCNGC 2 cut(s) 73, 282
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 1 cut(s) 466
HapII CCGG 5 cut(s) 209, 217, 246, 536, 651
HgaI GACGC 1 cut(s) 508
HhaI GCGC 2 cut(s) 11, 286
Hin1II CATG 1 cut(s) 574
Hin6I GCGC 2 cut(s) 9, 284
HinP1I GCGC 2 cut(s) 9, 284
HinfI GANTC 3 cut(s) 82, 220, 336
HpaII CCGG 5 cut(s) 209, 217, 246, 536, 651
HphI GGTGA 6 cut(s) 163, 407, 550, 607, 623, 640
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 2 cut(s) 321, 592
Hpy188III TCNNGA 2 cut(s) 79, 178
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 2 cut(s) 162, 509
HpyCH4III ACNGT 2 cut(s) 196, 425
HpyCH4V TGCA 2 cut(s) 526, 574
HpyF10VI GCNNNNNNNGC 1 cut(s) 463
HpyF3I CTNAG 4 cut(s) 122, 157, 204, 591
Hsp92II CATG 1 cut(s) 574
HspAI GCGC 2 cut(s) 9, 284
Kzo9I GATC 1 cut(s) 567
LmnI GCTCC 3 cut(s) 28, 379, 454
Lsp1109I GCAGC 2 cut(s) 84, 268
MaeI CTAG 2 cut(s) 236, 327
MaeIII GTNAC 6 cut(s) 151, 231, 578, 595, 611, 646
MalI GATC 1 cut(s) 569
MboI GATC 1 cut(s) 567
MboII GAAGA 4 cut(s) 334, 362, 397, 579
MfeI CAATTG 1 cut(s) 225
MlsI TGGCCA 1 cut(s) 466
MluCI AATT 5 cut(s) 225, 388, 469, 619, 686
MluNI TGGCCA 1 cut(s) 466
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 5 cut(s) 117, 166, 346, 370, 586
Mox20I TGGCCA 1 cut(s) 466
MscI TGGCCA 1 cut(s) 466
MseI TTAA 3 cut(s) 87, 546, 617
Msp20I TGGCCA 1 cut(s) 466
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 5 cut(s) 209, 217, 246, 536, 651
MunI CAATTG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 463
NdeII GATC 1 cut(s) 567
NlaIII CATG 1 cut(s) 574
NlaIV GGNNCC 1 cut(s) 642
NmuCI GTSAC 5 cut(s) 151, 578, 595, 611, 646
PfeI GAWTC 2 cut(s) 220, 336
PkrI GCNGC 2 cut(s) 74, 283
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PspEI GGTNACC 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 642
PvuII CAGCTG 1 cut(s) 281
SaqAI TTAA 3 cut(s) 87, 546, 617
SatI GCNGC 2 cut(s) 73, 282
Sau3AI GATC 1 cut(s) 567
SchI GAGTC 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 5 cut(s) 225, 388, 469, 619, 686
SspMI CTAG 2 cut(s) 236, 327
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 196, 425
TaqI TCGA 1 cut(s) 345
TasI AATT 5 cut(s) 225, 388, 469, 619, 686
TfiI GAWTC 2 cut(s) 220, 336
Tru1I TTAA 3 cut(s) 87, 546, 617
Tru9I TTAA 3 cut(s) 87, 546, 617
TscAI CASTG 1 cut(s) 165
TseFI GTSAC 5 cut(s) 151, 578, 595, 611, 646
TseI GCWGC 2 cut(s) 72, 281
Tsp45I GTSAC 5 cut(s) 151, 578, 595, 611, 646
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 1 cut(s) 165
XapI RAATTY 3 cut(s) 388, 469, 619
XspI CTAG 2 cut(s) 236, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.