Rh2DG038500

Protein of unknown function (DUF3119)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017568
Physical Location & Seq
Forward (+)
2665048 .. 2667448
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG038500.1

Sequence Viewer

Length: 615 bp
ATGGCAAGCGCTCTCTTGTCAGCTCCTTGTTTTCTCTCTCCAAAAAATAAAGAACTTGGTGGGTTTGTAAGCAGCTTCAGGAGTCTTAATAATGGCAATCTATTACATAATAATAGTTTGCTGAGGAAAAAGTATGGTGGCTCACTTGTGGTGACCTCAGTGTTTGGAAGGAAAGTCAAGACCACCAGAGAGACTGTGATACCTGAGCCGGATTACCGGATTCCAATTGTGTTACTAGGTCTATCCGGTGGATTAGCCTATACAAACAATCTTTTACCAGCTGCGCCTGTTGGTCTCCTTGGATTACTCCTATTGTTTCAGACTACTAGAGTTAGATTTGTCTTCGATGAAGAGGCTCTGGAAGTAAAAGTAGGGGAGGAGCTTGAGAATTCGGGTGAAAATGTCTTCGTGGGTGGTAAAAACCGTTGGAAATACTCATCATTTGTGAACTGGGAGCTTTGGTGGCCAAATTTCCCTATTCTGGTGTATTTCAAAGAGACGCAAACAAAACCTGAAGGGCAAGTGCATTTCTTTCCGGTGATATTTAATGGGAAGCAACTTTATGATATCATGGTGGAGAGAGCTGGCCCTTCCCAAACTAGCGGACCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3119

Protein Analysis

204

Amino Acids

22.75

Weight (kDa)

9.32

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3119 PF11317 67 - 194 7.6e-35 Protein of unknown function (DUF3119)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017568)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03270
malus_domestica MD02G1032500.v1.1
prunus_persica Prupe.7G243000_v2.0.a1 Prupe.7G243000_v2.0.a1
pyrus_communis pycom02g02670
rosa_chinensis RchiOBHm_Chr2g0088411
rosa_laevigata RLG00000015951
rosa_multiflora Rmu_sc0004235.1_g000002
rosa_roxburghii Rroxscaffold_2G00152690
rosa_rugosa Rorug01G0483900
rosa_samantha Rh2DG038500
rosa_wichuraiana Rw2G003050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 603
AcoI YGGCCR 1 cut(s) 464
AcsI RAATTY 2 cut(s) 388, 469
AcuI CTGAAG 2 cut(s) 61, 534
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 1 cut(s) 493
AluBI AGCT 6 cut(s) 23, 75, 281, 382, 457, 584
AluI AGCT 6 cut(s) 23, 75, 281, 382, 457, 584
Alw26I GTCTC 3 cut(s) 185, 299, 491
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 2 cut(s) 464, 586
ApeKI GCWGC 2 cut(s) 72, 281
ApoI RAATTY 2 cut(s) 388, 469
AspLEI GCGC 2 cut(s) 11, 286
AspS9I GGNCC 2 cut(s) 587, 605
AsuHPI GGTGA 3 cut(s) 163, 407, 550
AvaII GGWCC 1 cut(s) 605
BalI TGGCCA 1 cut(s) 466
BbsI GAAGAC 2 cut(s) 334, 397
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 84, 268
BcoDI GTCTC 3 cut(s) 185, 299, 491
BfaI CTAG 3 cut(s) 236, 327, 600
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 2 cut(s) 73, 282
BlsI GCNGC 2 cut(s) 74, 283
Bme18I GGWCC 1 cut(s) 605
BmgT120I GGNCC 2 cut(s) 587, 605
BmrI ACTGGG 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 460
BpiI GAAGAC 2 cut(s) 334, 397
Bpu10I CCTNAGC 2 cut(s) 122, 204
BpuEI CTTGAG 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 298
BsaWI WCCGGW 3 cut(s) 216, 245, 535
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMII CTCAG 3 cut(s) 113, 171, 195
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 84, 268
BshFI GGCC 2 cut(s) 466, 588
BsiSI CCGG 4 cut(s) 209, 217, 246, 536
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 3 cut(s) 185, 299, 491
BsmBI CGTCTC 1 cut(s) 491
BsnI GGCC 2 cut(s) 466, 588
Bso31I GGTCTC 1 cut(s) 299
BspACI CCGC 1 cut(s) 603
BspANI GGCC 2 cut(s) 466, 588
BspCNI CTCAG 3 cut(s) 114, 170, 196
BspTNI GGTCTC 1 cut(s) 299
BsrI ACTGG 1 cut(s) 455
BssECI CCNNGG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 298
Bst4CI ACNGT 2 cut(s) 196, 425
Bst6I CTCTTC 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 7, 586
BstDEI CTNAG 3 cut(s) 122, 157, 204
BstEII GGTNACC 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 286
BstMAI GTCTC 3 cut(s) 185, 299, 491
BstMWI GCNNNNNNNGC 1 cut(s) 463
BstPI GGTNACC 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 84, 268
BstV2I GAAGAC 2 cut(s) 334, 397
BsuRI GGCC 2 cut(s) 466, 588
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 7, 586
CfoI GCGC 2 cut(s) 11, 286
Cfr13I GGNCC 2 cut(s) 587, 605
CseI GACGC 1 cut(s) 508
CviAII CATG 1 cut(s) 571
DdeI CTNAG 3 cut(s) 122, 157, 204
EaeI YGGCCR 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 298
Eco31I GGTCTC 1 cut(s) 299
Eco32I GATATC 1 cut(s) 568
Eco47I GGWCC 1 cut(s) 605
Eco47III AGCGCT 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 61, 534
Eco91I GGTNACC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 388
EcoRV GATATC 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 1 cut(s) 574
FaiI YATR 5 cut(s) 108, 135, 261, 564, 572
FatI CATG 1 cut(s) 570
Fnu4HI GCNGC 2 cut(s) 73, 282
Fsp4HI GCNGC 2 cut(s) 73, 282
FspBI CTAG 3 cut(s) 236, 327, 600
GlaI GCGC 2 cut(s) 10, 285
GluI GCNGC 2 cut(s) 73, 282
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 466, 588
HapII CCGG 4 cut(s) 209, 217, 246, 536
HgaI GACGC 1 cut(s) 508
HhaI GCGC 2 cut(s) 11, 286
Hin1II CATG 1 cut(s) 574
Hin6I GCGC 2 cut(s) 9, 284
HinP1I GCGC 2 cut(s) 9, 284
HinfI GANTC 2 cut(s) 82, 220
HpaII CCGG 4 cut(s) 209, 217, 246, 536
HphI GGTGA 3 cut(s) 163, 407, 550
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 3 cut(s) 79, 178, 359
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 3 cut(s) 162, 509, 600
HpyCH4III ACNGT 2 cut(s) 196, 425
HpyCH4V TGCA 1 cut(s) 526
HpyF10VI GCNNNNNNNGC 1 cut(s) 463
HpyF3I CTNAG 3 cut(s) 122, 157, 204
Hsp92II CATG 1 cut(s) 574
HspAI GCGC 2 cut(s) 9, 284
LmnI GCTCC 3 cut(s) 28, 379, 454
Lsp1109I GCAGC 2 cut(s) 84, 268
MaeI CTAG 3 cut(s) 236, 327, 600
MaeIII GTNAC 2 cut(s) 151, 231
MboII GAAGA 3 cut(s) 334, 362, 397
MfeI CAATTG 1 cut(s) 225
MlsI TGGCCA 1 cut(s) 466
MluCI AATT 3 cut(s) 225, 388, 469
MluNI TGGCCA 1 cut(s) 466
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 4 cut(s) 117, 166, 346, 370
Mox20I TGGCCA 1 cut(s) 466
MscI TGGCCA 1 cut(s) 466
MseI TTAA 2 cut(s) 87, 546
Msp20I TGGCCA 1 cut(s) 466
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 4 cut(s) 209, 217, 246, 536
MunI CAATTG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 463
NlaIII CATG 1 cut(s) 574
NmuCI GTSAC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 74, 283
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PspEI GGTNACC 1 cut(s) 151
PspPI GGNCC 2 cut(s) 587, 605
PvuII CAGCTG 1 cut(s) 281
SaqAI TTAA 2 cut(s) 87, 546
SatI GCNGC 2 cut(s) 73, 282
Sau96I GGNCC 2 cut(s) 587, 605
SchI GAGTC 1 cut(s) 91
SinI GGWCC 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 3 cut(s) 225, 388, 469
SsiI CCGC 1 cut(s) 603
SspMI CTAG 3 cut(s) 236, 327, 600
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 196, 425
TaqI TCGA 1 cut(s) 345
TasI AATT 3 cut(s) 225, 388, 469
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 2 cut(s) 87, 546
Tru9I TTAA 2 cut(s) 87, 546
TscAI CASTG 1 cut(s) 165
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 72, 281
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 363
TspRI CASTG 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 605
XapI RAATTY 2 cut(s) 388, 469
XspI CTAG 3 cut(s) 236, 327, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.