Rorug01G0483900

Protein of unknown function (DUF3119)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017568
Physical Location & Seq
Reverse (-)
57080491 .. 57081521
1031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0483900.1

Sequence Viewer

Length: 537 bp
ATGATGAGGTTGCAAACTTACGCGGGGCTTAGCTTGATAGGAACCCTAGCGATTATTTACCATGCATTGAGCAGCAGAGGCCAGTTTTACCCCGCCATGGTTTACCTATCAACCTCCAAGATCAGTCTGGTGCTTCTTCTCAACATGGGCCTTGTCATCATGTGTATTTTGTGGCAACTGACTAAGAAGCTATTCCTCGGCTCACTCCGAGAGCCGGAGGTTGAGAGACTTAATGAGCAGTCGTGGAGGGAAGTCATGGAGATTCTTTTCGCAATCACTATTTTCCGGCAGGACTTTTCGGTGTCGTTTCTGGCTTTTGTCACTGCTCTGTTGCTGATCAAGGCGTTGCATTGGTTGGCTCAGAAGAGGGTTGAGTACATTGAGACTACTCCGTCTGTTCCCACGCTGTCGCATGTTCGGATTGTCTCCTTTTTGGGGTTCTTGTTTGTTGTAGATAGTCTCTTAATTTTTGTATACTTCTGTCAGCACCATCATTACGACTCAGAAGCCTTCGGTTTCCCTCTTTTTTGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3119

Protein Analysis

178

Amino Acids

20.55

Weight (kDa)

7.78

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_SYVN1_N PF25563 3 - 160 5.2e-62 E3 ubiquitin-protein ligase synoviolin-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017568)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03270
malus_domestica MD02G1032500.v1.1
prunus_persica Prupe.7G243000_v2.0.a1 Prupe.7G243000_v2.0.a1
pyrus_communis pycom02g02670
rosa_chinensis RchiOBHm_Chr2g0088411
rosa_laevigata RLG00000015951
rosa_multiflora Rmu_sc0004235.1_g000002
rosa_roxburghii Rroxscaffold_2G00152690
rosa_rugosa Rorug01G0483900
rosa_samantha Rh2DG038500
rosa_wichuraiana Rw2G003050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 391
AccI GTMKAC 1 cut(s) 474
AccII CGCG 1 cut(s) 23
AciI CCGC 2 cut(s) 23, 93
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 3 cut(s) 97, 214, 435
AluBI AGCT 2 cut(s) 33, 190
AluI AGCT 2 cut(s) 33, 190
Alw26I GTCTC 4 cut(s) 220, 377, 430, 464
AoxI GGCC 2 cut(s) 79, 148
ApeKI GCWGC 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 498
BclI TGATCA 1 cut(s) 336
BcoDI GTCTC 4 cut(s) 220, 377, 430, 464
BfaI CTAG 1 cut(s) 47
BisI GCNGC 1 cut(s) 73
BlpI GCTNAGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 43
Bpu1102I GCTNAGC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 96, 196
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 214, 435
Bse1I ACTGG 1 cut(s) 82
BseDI CCNNGG 2 cut(s) 96, 196
BseLI CCNNNNNNNGG 3 cut(s) 97, 214, 435
BseMII CTCAG 2 cut(s) 374, 516
BseNI ACTGG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 81, 150
BsiSI CCGG 2 cut(s) 215, 286
BslI CCNNNNNNNGG 3 cut(s) 97, 214, 435
BsmAI GTCTC 4 cut(s) 220, 377, 430, 464
BsnI GGCC 2 cut(s) 81, 150
Bsp143I GATC 2 cut(s) 120, 336
Bsp1720I GCTNAGC 1 cut(s) 29
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 2 cut(s) 23, 93
BspANI GGCC 2 cut(s) 81, 150
BspCNI CTCAG 2 cut(s) 373, 515
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 96, 196
BssMI GATC 2 cut(s) 120, 336
BssNAI GTATAC 1 cut(s) 475
BssT1I CCWWGG 1 cut(s) 96
Bst1107I GTATAC 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 359
BstDEI CTNAG 4 cut(s) 29, 183, 360, 502
BstDSI CCRYGG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 2 cut(s) 123, 339
BstMAI GTCTC 4 cut(s) 220, 377, 430, 464
BstMBI GATC 2 cut(s) 120, 336
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 416
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 84
BstZ17I GTATAC 1 cut(s) 475
BsuRI GGCC 2 cut(s) 81, 150
BtgI CCRYGG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 376
CviAII CATG 6 cut(s) 62, 97, 145, 160, 256, 413
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 4 cut(s) 29, 183, 360, 502
DpnI GATC 2 cut(s) 122, 338
DpnII GATC 2 cut(s) 120, 336
DrdI GACNNNNNNGTC 1 cut(s) 391
DseDI GACNNNNNNGTC 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 6 cut(s) 65, 100, 148, 163, 259, 416
FaiI YATR 7 cut(s) 63, 98, 146, 161, 257, 414, 475
FatI CATG 6 cut(s) 61, 96, 144, 159, 255, 412
FauI CCCGC 2 cut(s) 16, 100
FbaI TGATCA 1 cut(s) 336
FblI GTMKAC 1 cut(s) 474
Fnu4HI GCNGC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 1 cut(s) 47
GluI GCNGC 1 cut(s) 73
HaeIII GGCC 2 cut(s) 81, 150
HapII CCGG 2 cut(s) 215, 286
Hin1II CATG 6 cut(s) 65, 100, 148, 163, 259, 416
HinfI GANTC 2 cut(s) 262, 500
HpaII CCGG 2 cut(s) 215, 286
Hpy166II GTNNAC 2 cut(s) 103, 475
Hpy188I TCNGA 4 cut(s) 209, 363, 420, 505
Hpy8I GTNNAC 2 cut(s) 103, 475
HpyAV CCTTC 1 cut(s) 520
HpyCH4V TGCA 4 cut(s) 13, 65, 349, 531
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 4 cut(s) 29, 183, 360, 502
Hsp92II CATG 6 cut(s) 65, 100, 148, 163, 259, 416
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 2 cut(s) 120, 336
LpnPI CCDG 6 cut(s) 95, 113, 228, 275, 296, 299
Lsp1109I GCAGC 1 cut(s) 84
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 122, 338
MboI GATC 2 cut(s) 120, 336
MboII GAAGA 2 cut(s) 128, 376
MluCI AATT 1 cut(s) 465
MlyI GAGTC 1 cut(s) 494
MnlI CCTC 7 cut(s) 71, 124, 206, 211, 240, 360, 531
Mph1103I ATGCAT 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 2 cut(s) 231, 464
MspI CCGG 2 cut(s) 215, 286
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 78
NcoI CCATGG 1 cut(s) 96
NdeII GATC 2 cut(s) 120, 336
NlaIII CATG 6 cut(s) 65, 100, 148, 163, 259, 416
NlaIV GGNNCC 1 cut(s) 43
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 67
NspI RCATGY 1 cut(s) 416
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 1 cut(s) 74
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 1 cut(s) 148
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SaqAI TTAA 2 cut(s) 231, 464
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 2 cut(s) 120, 336
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 1 cut(s) 494
SetI ASST 6 cut(s) 11, 35, 108, 116, 192, 222
Sse9I AATT 1 cut(s) 465
SsiI CCGC 2 cut(s) 23, 93
SspMI CTAG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 96
TasI AATT 1 cut(s) 465
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 2 cut(s) 231, 464
Tru9I TTAA 2 cut(s) 231, 464
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 1 cut(s) 328
XceI RCATGY 1 cut(s) 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 1 cut(s) 47
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.