FvH4_1g03340

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015513
Physical Location & Seq
Reverse (-)
1855195 .. 1858476
3282 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03340.t1

Sequence Viewer

Length: 1266 bp
ATGGAAACCAGCAAGACCCAGAAGAGAAAGAAGTGGTTTTTACCACTGGTGCTGTCTCTGCTCCTCTCCACTTTCCTCATCTTCATCACTGTCTTCACTTCTTCAAGCTCATCTGCTTCAAGACTCTACAAGACCCACGTCAGAAACAACGTCCCACACTTCGTGGAGTCAAACTCAAAGCTCAAAGTTTCTGACACTAACAAGGACCCAGTACCCAGATTGGCTTACTTGATCTCCGGCTCAATGGGGGACTGTGAGAGCTTGAAGAGGACACTCAAGGCTCTGTACCATCCGAGGAATCAGTATGCTGTGCACTTGGACCTTGAGGCTTCGCCGGAGGAGAGGTTGGAGCTGGTGAGGTTTGTGAGGAGTGAGCCCATGTTTGAGAAGCTTGGGAATGTGAGAGTTGTGGTGAGGGCTAATTTGGTGACTTACAGAGGGCCAACAATGGTGAGCAATACGCTTCATGCCGCGGCGATTTTGCTGAAGGAAGGTGGAAAGTGGGATTGGTTTATCAATTTGAGTGCTTCTGATTATCCTTTGGTGACCCAAGATGATATGCTTCATGTATTGTCATCCATTCCAAGAACTCTCAACTTCATAGAGCATACCAGTGACATCGGCTGGAAGGAGTATCAGAGGGCAAAACCGATTATAATTGACCCAGGGCTGTATAGTGTACAAAAGTCAGATGTATTCTGGGCACCAGAGAAAAGGAGTGTTCCAAGTGCATATAAGCTGTTTACAGGTTCTGCTTGGATGATGCTCTCCCGTCCTTTTGTGGAATACATGGTCTGGGGGTGGGACAACCTCCCAAGGATAGTCCTTATGTATTATGCCAACTTTCTTTCTTCACCAGAAGGTTATTTCCACACAGTCATCTGTAATGCTGAGGAGTTTCGAAACACTACTGTGAGCCATGATCTTCACTTCATATCATGGGACAACCCCCCGAAACAACACCCACATTTCCTCACCAATGATGACTACGAGCTCATGGTAGACAGCAATGCCCCCTTCGCCAGGAAATTTGGCAGGAATGAGTCCGTTCTCAGCAAGATCGACTCTGAGCTTTTAGGCTGCAATGCTGATGGGTATGTACCAGGAGGATGGTTTGGTACTGGAACAAATGGAAATGCTACCGTTCCGGATTACACAATAAAAAATGTGACCACTCTTAGGCCAGGTCCAGGTGCTGAAAGACTAAAACGTCTCATCACTGGTTTAATATCTGCAGAGGATTTTCATGCGAAACAATGTGCCTGA

Protein Analysis

422

Amino Acids

47.84

Weight (kDa)

8.67

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 74 - 333 7.7e-78 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015513)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03340
malus_domestica MD02G1033100.v1.1 MD15G1173500.v1.1
prunus_persica Prupe.7G242200_v2.0.a1 Prupe.7G242200_v2.0.a1
pyrus_communis pycom02g02720 pycom15g15550
rosa_chinensis RchiOBHm_Chr2g0088581
rosa_laevigata RLG00000015967
rosa_roxburghii Rroxscaffold_2G00152530
rosa_rugosa Rorug01G0485300
rosa_samantha Rh2AG040400 Rh2BG039300 Rh2CG040000 Rh2DG039600
rosa_wichuraiana Rw2G003150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 656
AasI GACNNNNNNGTC 1 cut(s) 1209
AccB1I GGYRCC 1 cut(s) 703
AccI GTMKAC 1 cut(s) 1002
AccII CGCG 1 cut(s) 473
AccIII TCCGGA 1 cut(s) 1147
AciI CCGC 2 cut(s) 471, 473
AcsI RAATTY 1 cut(s) 1028
AcuI CTGAAG 1 cut(s) 506
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 5 cut(s) 213, 287, 681, 1101, 1120
AfiI CCNNNNNNNGG 3 cut(s) 1023, 1179, 1190
AgsI TTSAA 3 cut(s) 105, 120, 265
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 5 cut(s) 664, 1022, 1102, 1183, 1189
AjuI GAANNNNNNNTTGG 2 cut(s) 490, 522
AleI CACNNNNGTG 1 cut(s) 911
AluBI AGCT 8 cut(s) 108, 181, 261, 352, 391, 739, 994, 1072
AluI AGCT 8 cut(s) 108, 181, 261, 352, 391, 739, 994, 1072
Alw21I GWGCWC 2 cut(s) 315, 996
Alw26I GTCTC 2 cut(s) 60, 1217
Alw44I GTGCAC 1 cut(s) 311
AlwNI CAGNNNCTG 2 cut(s) 752, 1196
Aor13HI TCCGGA 1 cut(s) 1147
AoxI GGCC 2 cut(s) 440, 1181
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 1080
ApoI RAATTY 1 cut(s) 1028
AspS9I GGNCC 4 cut(s) 205, 319, 440, 1187
AsuHPI GGTGA 7 cut(s) 367, 424, 439, 463, 556, 846, 967
AsuII TTCGAA 1 cut(s) 901
AvaII GGWCC 3 cut(s) 205, 319, 1187
BaeGI GKGCMC 2 cut(s) 315, 706
BanI GGYRCC 1 cut(s) 703
BanII GRGCYC 2 cut(s) 378, 996
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 2 cut(s) 315, 996
BbvCI CCTCAGC 1 cut(s) 891
BbvI GCAGC 1 cut(s) 1067
BccI CCATC 3 cut(s) 297, 1085, 1104
BciT130I CCWGG 5 cut(s) 666, 1024, 1104, 1185, 1191
BcoDI GTCTC 2 cut(s) 60, 1217
BfmI CTRYAG 1 cut(s) 1233
BisI GCNGC 3 cut(s) 471, 474, 1081
BlsI GCNGC 3 cut(s) 472, 475, 1082
Bme1390I CCNGG 5 cut(s) 666, 1024, 1104, 1185, 1191
Bme18I GGWCC 3 cut(s) 205, 319, 1187
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 4 cut(s) 205, 319, 440, 1187
BmiI GGNNCC 2 cut(s) 207, 705
BmrFI CCNGG 5 cut(s) 666, 1024, 1104, 1185, 1191
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 753
BmuI ACTGGG 1 cut(s) 203
BoxI GACNNNNGTC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 85
BplI GAGNNNNNCTC 2 cut(s) 158, 190
Bpu10I CCTNAGC 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 901
BpuEI CTTGAG 2 cut(s) 260, 344
BsaJI CCNNGG 5 cut(s) 293, 471, 664, 665, 815
BsaWI WCCGGW 1 cut(s) 1147
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 329, 359
Bsc4I CCNNNNNNNGG 3 cut(s) 1023, 1179, 1190
Bse1I ACTGG 5 cut(s) 51, 209, 612, 1126, 1225
Bse3DI GCAATG 2 cut(s) 1015, 1090
BseAI TCCGGA 1 cut(s) 1147
BseBI CCWGG 5 cut(s) 666, 1024, 1104, 1185, 1191
BseDI CCNNGG 5 cut(s) 293, 471, 664, 665, 815
BseGI GGATG 4 cut(s) 289, 575, 765, 1115
BseLI CCNNNNNNNGG 3 cut(s) 1023, 1179, 1190
BseMI GCAATG 2 cut(s) 1015, 1090
BseMII CTCAG 3 cut(s) 882, 1059, 1066
BseNI ACTGG 5 cut(s) 51, 209, 612, 1126, 1225
BseRI GAGGAG 4 cut(s) 53, 353, 382, 908
BseSI GKGCMC 2 cut(s) 315, 706
BseXI GCAGC 1 cut(s) 1067
Bsh1236I CGCG 1 cut(s) 473
BshFI GGCC 2 cut(s) 442, 1183
BshNI GGYRCC 1 cut(s) 703
BsiHKAI GWGCWC 2 cut(s) 315, 996
BsiSI CCGG 3 cut(s) 237, 335, 1148
BslFI GGGAC 4 cut(s) 137, 263, 818, 956
BslI CCNNNNNNNGG 3 cut(s) 1023, 1179, 1190
BsmAI GTCTC 2 cut(s) 60, 1217
BsmBI CGTCTC 1 cut(s) 1217
BsmFI GGGAC 4 cut(s) 137, 263, 818, 956
BsnI GGCC 2 cut(s) 442, 1183
Bsp119I TTCGAA 1 cut(s) 901
Bsp1286I GDGCHC 4 cut(s) 315, 378, 706, 996
Bsp13I TCCGGA 1 cut(s) 1147
Bsp1407I TGTACA 1 cut(s) 679
Bsp143I GATC 3 cut(s) 231, 922, 1059
BspACI CCGC 2 cut(s) 471, 473
BspANI GGCC 2 cut(s) 442, 1183
BspCNI CTCAG 3 cut(s) 883, 1060, 1065
BspEI TCCGGA 1 cut(s) 1147
BspFNI CGCG 1 cut(s) 473
BspLI GGNNCC 2 cut(s) 207, 705
BspMAI CTGCAG 1 cut(s) 1237
BspT104I TTCGAA 1 cut(s) 901
BspT107I GGYRCC 1 cut(s) 703
BsrDI GCAATG 2 cut(s) 1015, 1090
BsrGI TGTACA 1 cut(s) 679
BsrI ACTGG 5 cut(s) 51, 209, 612, 1126, 1225
BssECI CCNNGG 5 cut(s) 293, 471, 664, 665, 815
BssMI GATC 3 cut(s) 231, 922, 1059
BssT1I CCWWGG 1 cut(s) 815
Bst2UI CCWGG 5 cut(s) 666, 1024, 1104, 1185, 1191
Bst4CI ACNGT 5 cut(s) 91, 254, 877, 913, 1144
Bst6I CTCTTC 2 cut(s) 17, 260
BstAUI TGTACA 1 cut(s) 679
BstBI TTCGAA 1 cut(s) 901
BstDEI CTNAG 4 cut(s) 891, 1052, 1068, 1178
BstDSI CCRYGG 1 cut(s) 471
BstEII GGTNACC 1 cut(s) 544
BstENI CCTNNNNNAGG 1 cut(s) 1021
BstF5I GGATG 4 cut(s) 289, 575, 765, 1115
BstFNI CGCG 1 cut(s) 473
BstKTI GATC 3 cut(s) 234, 925, 1062
BstMAI GTCTC 2 cut(s) 60, 1217
BstMBI GATC 3 cut(s) 231, 922, 1059
BstMWI GCNNNNNNNGC 2 cut(s) 58, 1019
BstNI CCWGG 5 cut(s) 666, 1024, 1104, 1185, 1191
BstPAI GACNNNNGTC 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 544
BstSCI CCNGG 5 cut(s) 664, 1022, 1102, 1183, 1189
BstSFI CTRYAG 1 cut(s) 1233
BstSLI GKGCMC 2 cut(s) 315, 706
BstUI CGCG 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 1067
BstV2I GAAGAC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 1110
BsuRI GGCC 2 cut(s) 442, 1183
BtgI CCRYGG 1 cut(s) 471
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 4 cut(s) 289, 575, 765, 1115
BtsIMutI CAGTG 4 cut(s) 44, 87, 619, 1218
CaiI CAGNNNCTG 2 cut(s) 752, 1196
Cfr13I GGNCC 4 cut(s) 205, 319, 440, 1187
Cfr42I CCGCGG 1 cut(s) 474
Csp6I GTAC 5 cut(s) 212, 286, 680, 1100, 1119
CviAII CATG 8 cut(s) 379, 467, 566, 790, 920, 939, 997, 1247
CviQI GTAC 5 cut(s) 212, 286, 680, 1100, 1119
DdeI CTNAG 4 cut(s) 891, 1052, 1068, 1178
DpnI GATC 3 cut(s) 233, 924, 1061
DpnII GATC 3 cut(s) 231, 922, 1059
DraIII CACNNNGTG 1 cut(s) 163
DrdI GACNNNNNNGTC 1 cut(s) 1209
DseDI GACNNNNNNGTC 1 cut(s) 1209
Eam1104I CTCTTC 2 cut(s) 17, 260
EarI CTCTTC 2 cut(s) 17, 260
Ecl136II GAGCTC 1 cut(s) 994
Eco130I CCWWGG 1 cut(s) 815
Eco24I GRGCYC 2 cut(s) 378, 996
Eco47I GGWCC 3 cut(s) 205, 319, 1187
Eco53kI GAGCTC 1 cut(s) 994
Eco57I CTGAAG 1 cut(s) 506
Eco91I GGTNACC 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 994
EcoNI CCTNNNNNAGG 1 cut(s) 1021
EcoO109I RGGNCCY 1 cut(s) 205
EcoO65I GGTNACC 1 cut(s) 544
EcoRII CCWGG 5 cut(s) 664, 1022, 1102, 1183, 1189
EcoT14I CCWWGG 1 cut(s) 815
EcoT38I GRGCYC 2 cut(s) 378, 996
ErhI CCWWGG 1 cut(s) 815
Esp3I CGTCTC 1 cut(s) 1217
FaeI CATG 8 cut(s) 382, 470, 569, 793, 923, 942, 1000, 1250
FaqI GGGAC 4 cut(s) 137, 263, 818, 956
FatI CATG 8 cut(s) 378, 466, 565, 789, 919, 938, 996, 1246
FblI GTMKAC 1 cut(s) 1002
Fnu4HI GCNGC 3 cut(s) 471, 474, 1081
FokI GGATG 4 cut(s) 276, 562, 772, 1122
FriOI GRGCYC 2 cut(s) 378, 996
Fsp4HI GCNGC 3 cut(s) 471, 474, 1081
GluI GCNGC 3 cut(s) 471, 474, 1081
HaeIII GGCC 2 cut(s) 442, 1183
HapII CCGG 3 cut(s) 237, 335, 1148
Hin1II CATG 8 cut(s) 382, 470, 569, 793, 923, 942, 1000, 1250
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 5 cut(s) 123, 167, 298, 1043, 1064
HpaII CCGG 3 cut(s) 237, 335, 1148
HphI GGTGA 7 cut(s) 367, 424, 439, 463, 556, 846, 967
Hpy166II GTNNAC 4 cut(s) 313, 680, 744, 1003
Hpy188I TCNGA 7 cut(s) 143, 193, 294, 532, 639, 691, 1069
Hpy188III TCNNGA 2 cut(s) 120, 1148
Hpy8I GTNNAC 4 cut(s) 313, 680, 744, 1003
HpyAV CCTTC 5 cut(s) 481, 485, 622, 854, 1027
HpyCH4III ACNGT 5 cut(s) 91, 254, 877, 913, 1144
HpyCH4IV ACGT 3 cut(s) 138, 150, 1210
HpyCH4V TGCA 4 cut(s) 313, 731, 1083, 1235
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 1019
HpyF3I CTNAG 4 cut(s) 891, 1052, 1068, 1178
HpySE526I ACGT 3 cut(s) 138, 150, 1210
Hsp92II CATG 8 cut(s) 382, 470, 569, 793, 923, 942, 1000, 1250
Kpn2I TCCGGA 1 cut(s) 1147
KspI CCGCGG 1 cut(s) 474
Kzo9I GATC 3 cut(s) 231, 922, 1059
LmnI GCTCC 2 cut(s) 66, 349
Lsp1109I GCAGC 1 cut(s) 1067
LweI GCATC 1 cut(s) 753
MaeII ACGT 3 cut(s) 138, 150, 1210
MaeIII GTNAC 4 cut(s) 427, 544, 614, 1168
MalI GATC 3 cut(s) 233, 924, 1061
MboI GATC 3 cut(s) 231, 922, 1059
MboII GAAGA 7 cut(s) 34, 73, 85, 93, 277, 843, 917
MhlI GDGCHC 4 cut(s) 315, 378, 706, 996
MluCI AATT 4 cut(s) 421, 517, 657, 1028
MlyI GAGTC 4 cut(s) 117, 176, 1052, 1058
MmeI TCCRAC 1 cut(s) 327
MroI TCCGGA 1 cut(s) 1147
MseI TTAA 1 cut(s) 1226
MslI CAYNNNNRTG 2 cut(s) 612, 911
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 3 cut(s) 237, 335, 1148
MspR9I CCNGG 5 cut(s) 666, 1024, 1104, 1185, 1191
MvaI CCWGG 5 cut(s) 666, 1024, 1104, 1185, 1191
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 58, 1019
NdeII GATC 3 cut(s) 231, 922, 1059
NlaIII CATG 8 cut(s) 382, 470, 569, 793, 923, 942, 1000, 1250
NlaIV GGNNCC 2 cut(s) 207, 705
NmuCI GTSAC 4 cut(s) 427, 544, 614, 1168
NspV TTCGAA 1 cut(s) 901
OliI CACNNNNGTG 1 cut(s) 911
PasI CCCWGGG 1 cut(s) 665
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 3 cut(s) 472, 475, 1082
PleI GAGTC 4 cut(s) 117, 175, 1051, 1058
PpsI GAGTC 4 cut(s) 117, 175, 1051, 1058
PpuMI RGGWCCY 1 cut(s) 205
PshAI GACNNNNGTC 1 cut(s) 137
PsiI TTATAA 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 996
Psp5II RGGWCCY 1 cut(s) 205
Psp6I CCWGG 5 cut(s) 664, 1022, 1102, 1183, 1189
PspEI GGTNACC 1 cut(s) 544
PspGI CCWGG 5 cut(s) 664, 1022, 1102, 1183, 1189
PspN4I GGNNCC 2 cut(s) 207, 705
PspPI GGNCC 4 cut(s) 205, 319, 440, 1187
PspPPI RGGWCCY 1 cut(s) 205
PstI CTGCAG 1 cut(s) 1237
PstNI CAGNNNCTG 2 cut(s) 752, 1196
RsaI GTAC 5 cut(s) 213, 287, 681, 1101, 1120
RsaNI GTAC 5 cut(s) 212, 286, 680, 1100, 1119
RseI CAYNNNNRTG 2 cut(s) 612, 911
SacI GAGCTC 1 cut(s) 996
SacII CCGCGG 1 cut(s) 474
SaqAI TTAA 1 cut(s) 1226
SatI GCNGC 3 cut(s) 471, 474, 1081
Sau3AI GATC 3 cut(s) 231, 922, 1059
Sau96I GGNCC 4 cut(s) 205, 319, 440, 1187
SchI GAGTC 4 cut(s) 117, 176, 1052, 1058
ScrFI CCNGG 5 cut(s) 666, 1024, 1104, 1185, 1191
SduI GDGCHC 4 cut(s) 315, 378, 706, 996
SfaNI GCATC 1 cut(s) 753
SfcI CTRYAG 1 cut(s) 1233
Sfr303I CCGCGG 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 901
SgrBI CCGCGG 1 cut(s) 474
SinI GGWCC 3 cut(s) 205, 319, 1187
SmiMI CAYNNNNRTG 2 cut(s) 612, 911
SmlI CTYRAG 2 cut(s) 275, 323
SmoI CTYRAG 2 cut(s) 275, 323
Sse9I AATT 4 cut(s) 421, 517, 657, 1028
SsiI CCGC 2 cut(s) 471, 473
SstI GAGCTC 1 cut(s) 996
StyD4I CCNGG 5 cut(s) 664, 1022, 1102, 1183, 1189
StyI CCWWGG 1 cut(s) 815
TaaI ACNGT 5 cut(s) 91, 254, 877, 913, 1144
TaiI ACGT 3 cut(s) 141, 153, 1213
TaqI TCGA 2 cut(s) 901, 1062
TasI AATT 4 cut(s) 421, 517, 657, 1028
TatI WGTACW 1 cut(s) 679
TauI GCSGC 2 cut(s) 473, 476
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 1 cut(s) 1226
Tru9I TTAA 1 cut(s) 1226
TscAI CASTG 4 cut(s) 51, 94, 619, 1225
TseFI GTSAC 4 cut(s) 427, 544, 614, 1168
TseI GCWGC 1 cut(s) 1080
Tsp45I GTSAC 4 cut(s) 427, 544, 614, 1168
TspDTI ATGAA 6 cut(s) 73, 455, 554, 589, 922, 1235
TspGWI ACGGA 1 cut(s) 1036
TspRI CASTG 4 cut(s) 51, 94, 619, 1225
VneI GTGCAC 1 cut(s) 311
VpaK11BI GGWCC 3 cut(s) 205, 319, 1187
XagI CCTNNNNNAGG 1 cut(s) 1021
XapI RAATTY 1 cut(s) 1028
XmiI GTMKAC 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.