pycom02g02720

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0015513
Physical Location & Seq
Reverse (-)
1727042 .. 1729207
2166 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02720.4

Sequence Viewer

Length: 1260 bp
ATGGATACCAACAAGCCACAGAAGAAGAAGAAATGGTTTTTACCCTTGGTGGTTTCACTTCTTCTCTCCACCCTGCTAATCTTCATTACTGTTTTTACCTCTTCCAGCTCGTCTTCCGCATTATTTTACCGACCCCGTGTGAAAAAACACGTCCCACATTTCGTGGAATCGAAGCTAAAGATTTCGGAAACTTCCAAAAACCCAGTTCCCAGATTGGCCTACTTGATCTCCGGCTCCGTCGGCGACGGCGGCAGCTTGAAGCGGACGCTGAAAGCGCTGTACCATCCGAGGAATCAGTACGCAGTGCATTTGGACCTGGAGGCGTCGGCGGAGGAGCGGCTGGACTTGGCGAGATTTGTGAAGGAGGAGCCATTGTTTGCCAAGCTGGGGAATGTCAGGGCGGTGGTGAGGGCCAATTTGGTGACGTACAGAGGGCCGACGATGGTCACCAATACGCTGCACGCGGCGGCGATTTTGTTGAAGGAGGGTGGCGAGTGGGATTGGTTTATCAATTTGAGTGCTTCTGATTATCCTTTGGTGACGCAAGATGATCTGCTTCATGTCTTGTCATCCATTCCAAGAAATCTTAATTTCATTGAGCATACCAGTGACATTGGCTGGAAGGAGGATCAGAGGGCAAAGCCCGTTATAATTGATCCGGGGCTGTATAGCCGGCAAAAATCAGATGTATTCTGGATCTCACAGAAGAGGAGCGTGCCGACTGCATATAAGCTGTTTACAGGGTCTGCTTGGATGATGCTCTCCCGTCCTTTTATCGAATATATTTTATGGGGCTGGGACAATCTGCCAAGGACAGTCCTTATGTATTATGCCAACTTTCTCTCTTCACCAGAAGGGTATTTCCACACTGTCATCTGCAACGCTGAGGAGTTTCGGAACACTACCGTGAACCATGATCTCCACTTCATATCATGGGACAACCCCCCAAAACAACATCCACATTTCCTCATCATGGATGACTTCCAGCGCATGGTAGACAGTAATGCGCCCTTCGCCAGGAAATTTGGGAGGAATGAGTCAGTTCTTGACAAGATCGACTCTGAGCTTTTAGGCTGCAATGCCAATGGATATGTGCCAGGTGGATGGTTCAGTACTCAAGCAAATGGAAGTGCGACAGTTCCAGATTACAGTTTAAAAAACATCACCACTCTTAGGCCGGGTCTTGGTGCTCAAAGGCTAAAGCGCCTCGTCACCAGTTTGATATCTGCCGAGGATTTTCATGCGAAGCAATGCACCTGA

Protein Analysis

420

Amino Acids

47.57

Weight (kDa)

9.25

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015513)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03340
malus_domestica MD02G1033100.v1.1 MD15G1173500.v1.1
prunus_persica Prupe.7G242200_v2.0.a1 Prupe.7G242200_v2.0.a1
pyrus_communis pycom02g02720 pycom15g15550
rosa_chinensis RchiOBHm_Chr2g0088581
rosa_laevigata RLG00000015967
rosa_roxburghii Rroxscaffold_2G00152530
rosa_rugosa Rorug01G0485300
rosa_samantha Rh2AG040400 Rh2BG039300 Rh2CG040000 Rh2DG039600
rosa_wichuraiana Rw2G003150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 650
AccB7I CCANNNNNTGG 1 cut(s) 991
AccBSI CCGCTC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 996
AccII CGCG 1 cut(s) 464
AciI CCGC 8 cut(s) 117, 249, 262, 329, 337, 401, 464, 467
AclWI GGATC 3 cut(s) 636, 650, 704
AcsI RAATTY 1 cut(s) 1022
AcyI GRCGYC 1 cut(s) 323
AfaI GTAC 4 cut(s) 281, 299, 428, 1114
AfeI AGCGCT 1 cut(s) 276
AfiI CCNNNNNNNGG 6 cut(s) 387, 973, 991, 1017, 1173, 1184
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 2 cut(s) 259, 481
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 3 cut(s) 315, 1016, 1096
AleI CACNNNNGTG 1 cut(s) 905
AluBI AGCT 6 cut(s) 108, 175, 255, 385, 733, 1066
AluI AGCT 6 cut(s) 108, 175, 255, 385, 733, 1066
Alw21I GWGCWC 1 cut(s) 1192
AlwI GGATC 3 cut(s) 636, 650, 704
AlwNI CAGNNNCTG 1 cut(s) 746
Aor51HI AGCGCT 1 cut(s) 276
AoxI GGCC 4 cut(s) 216, 411, 434, 1175
ApeKI GCWGC 3 cut(s) 252, 457, 1074
ApoI RAATTY 1 cut(s) 1022
AspLEI GCGC 4 cut(s) 277, 990, 1009, 1206
AspS9I GGNCC 3 cut(s) 313, 411, 434
AsuC2I CCSGG 2 cut(s) 660, 1179
AsuHPI GGTGA 7 cut(s) 418, 433, 439, 550, 840, 1156, 1204
AvaII GGWCC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 1192
BbvCI CCTCAGC 1 cut(s) 885
BbvI GCAGC 3 cut(s) 264, 444, 1061
BccI CCATC 3 cut(s) 291, 436, 1098
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 3 cut(s) 317, 1018, 1098
BcnI CCSGG 2 cut(s) 660, 1179
BfoI RGCGCY 2 cut(s) 278, 1207
BisI GCNGC 7 cut(s) 250, 253, 338, 458, 465, 468, 1075
BlsI GCNGC 7 cut(s) 251, 254, 339, 459, 466, 469, 1076
BmcAI AGTACT 1 cut(s) 1114
Bme1390I CCNGG 5 cut(s) 317, 660, 1018, 1098, 1179
Bme18I GGWCC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 3 cut(s) 313, 411, 434
BmiI GGNNCC 2 cut(s) 235, 369
BmrFI CCNGG 5 cut(s) 317, 660, 1018, 1098, 1179
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 747
BmuI ACTGGG 1 cut(s) 197
BoxI GACNNNNGTC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 885
BpuEI CTTGAG 1 cut(s) 1101
BpuMI CCSGG 2 cut(s) 660, 1179
BsaHI GRCGYC 1 cut(s) 323
BsaJI CCNNGG 5 cut(s) 45, 287, 659, 809, 1230
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 359, 389
Bsc4I CCNNNNNNNGG 6 cut(s) 387, 973, 991, 1017, 1173, 1184
Bse118I RCCGGY 1 cut(s) 672
Bse1I ACTGG 3 cut(s) 203, 606, 1215
Bse3DI GCAATG 2 cut(s) 1084, 1256
BseBI CCWGG 3 cut(s) 317, 1018, 1098
BseDI CCNNGG 5 cut(s) 45, 287, 659, 809, 1230
BseGI GGATG 6 cut(s) 283, 569, 759, 955, 982, 1109
BseLI CCNNNNNNNGG 6 cut(s) 387, 973, 991, 1017, 1173, 1184
BseMI GCAATG 2 cut(s) 1084, 1256
BseMII CTCAG 2 cut(s) 876, 1053
BseNI ACTGG 3 cut(s) 203, 606, 1215
BseRI GAGGAG 4 cut(s) 347, 380, 724, 902
BseXI GCAGC 3 cut(s) 264, 444, 1061
BseYI CCCAGC 2 cut(s) 385, 795
BsgI GTGCAG 1 cut(s) 443
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 4 cut(s) 218, 413, 436, 1177
BsiHKAI GWGCWC 1 cut(s) 1192
BsiSI CCGG 4 cut(s) 231, 659, 673, 1178
BslFI GGGAC 3 cut(s) 137, 812, 950
BslI CCNNNNNNNGG 6 cut(s) 387, 973, 991, 1017, 1173, 1184
BsmFI GGGAC 3 cut(s) 137, 812, 950
BsnI GGCC 4 cut(s) 218, 413, 436, 1177
Bsp1286I GDGCHC 1 cut(s) 1192
Bsp143I GATC 7 cut(s) 225, 550, 628, 655, 696, 916, 1053
BspACI CCGC 8 cut(s) 117, 249, 262, 329, 337, 401, 464, 467
BspANI GGCC 4 cut(s) 218, 413, 436, 1177
BspCNI CTCAG 2 cut(s) 877, 1054
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 2 cut(s) 235, 369
BspPI GGATC 3 cut(s) 636, 650, 704
BsrBI CCGCTC 1 cut(s) 337
BsrDI GCAATG 2 cut(s) 1084, 1256
BsrFI RCCGGY 1 cut(s) 672
BsrI ACTGG 3 cut(s) 203, 606, 1215
BssAI RCCGGY 1 cut(s) 672
BssECI CCNNGG 5 cut(s) 45, 287, 659, 809, 1230
BssMI GATC 7 cut(s) 225, 550, 628, 655, 696, 916, 1053
BssNI GRCGYC 1 cut(s) 323
BssT1I CCWWGG 2 cut(s) 45, 809
Bst2UI CCWGG 3 cut(s) 317, 1018, 1098
Bst4CI ACNGT 7 cut(s) 91, 817, 871, 907, 1001, 1138, 1151
Bst6I CTCTTC 3 cut(s) 106, 701, 850
BstACI GRCGYC 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 462, 674, 716
BstDEI CTNAG 3 cut(s) 885, 1062, 1172
BstEII GGTNACC 1 cut(s) 445
BstENI CCTNNNNNAGG 1 cut(s) 1015
BstF5I GGATG 6 cut(s) 283, 569, 759, 955, 982, 1109
BstFNI CGCG 1 cut(s) 464
BstH2I RGCGCY 2 cut(s) 278, 1207
BstHHI GCGC 4 cut(s) 277, 990, 1009, 1206
BstKTI GATC 7 cut(s) 228, 553, 631, 658, 699, 919, 1056
BstMBI GATC 7 cut(s) 225, 550, 628, 655, 696, 916, 1053
BstMWI GCNNNNNNNGC 4 cut(s) 240, 249, 274, 1013
BstNI CCWGG 3 cut(s) 317, 1018, 1098
BstPAI GACNNNNGTC 1 cut(s) 443
BstPI GGTNACC 1 cut(s) 445
BstSCI CCNGG 5 cut(s) 315, 658, 1016, 1096, 1177
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 3 cut(s) 264, 444, 1061
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 696
BstXI CCANNNNNNTGG 1 cut(s) 1104
BstYI RGATCY 1 cut(s) 696
BsuRI GGCC 4 cut(s) 218, 413, 436, 1177
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 6 cut(s) 283, 569, 759, 955, 982, 1109
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 3 cut(s) 309, 613, 867
Cac8I GCNNGC 3 cut(s) 462, 674, 716
CaiI CAGNNNCTG 1 cut(s) 746
CfoI GCGC 4 cut(s) 277, 990, 1009, 1206
Cfr10I RCCGGY 1 cut(s) 672
Cfr13I GGNCC 3 cut(s) 313, 411, 434
CseI GACGC 3 cut(s) 274, 312, 550
Csp6I GTAC 4 cut(s) 280, 298, 427, 1113
CviAII CATG 6 cut(s) 560, 914, 933, 973, 991, 1241
CviQI GTAC 4 cut(s) 280, 298, 427, 1113
DdeI CTNAG 3 cut(s) 885, 1062, 1172
DpnI GATC 7 cut(s) 227, 552, 630, 657, 698, 918, 1055
DpnII GATC 7 cut(s) 225, 550, 628, 655, 696, 916, 1053
DraI TTTAAA 1 cut(s) 1155
Eam1104I CTCTTC 3 cut(s) 106, 701, 850
EarI CTCTTC 3 cut(s) 106, 701, 850
EciI GGCGGA 1 cut(s) 344
Eco130I CCWWGG 2 cut(s) 45, 809
Eco32I GATATC 1 cut(s) 1224
Eco47I GGWCC 1 cut(s) 313
Eco47III AGCGCT 1 cut(s) 276
Eco91I GGTNACC 1 cut(s) 445
EcoNI CCTNNNNNAGG 1 cut(s) 1015
EcoO65I GGTNACC 1 cut(s) 445
EcoRII CCWGG 3 cut(s) 315, 1016, 1096
EcoRV GATATC 1 cut(s) 1224
EcoT14I CCWWGG 2 cut(s) 45, 809
ErhI CCWWGG 2 cut(s) 45, 809
FaeI CATG 6 cut(s) 563, 917, 936, 976, 994, 1244
FaqI GGGAC 3 cut(s) 137, 812, 950
FatI CATG 6 cut(s) 559, 913, 932, 972, 990, 1240
FblI GTMKAC 1 cut(s) 996
Fnu4HI GCNGC 7 cut(s) 250, 253, 338, 458, 465, 468, 1075
FokI GGATG 6 cut(s) 270, 556, 766, 942, 989, 1116
Fsp4HI GCNGC 7 cut(s) 250, 253, 338, 458, 465, 468, 1075
GlaI GCGC 4 cut(s) 276, 989, 1008, 1205
GluI GCNGC 7 cut(s) 250, 253, 338, 458, 465, 468, 1075
GsaI CCCAGC 2 cut(s) 389, 799
GsuI CTGGAG 1 cut(s) 338
HaeII RGCGCY 2 cut(s) 278, 1207
HaeIII GGCC 4 cut(s) 218, 413, 436, 1177
HapII CCGG 4 cut(s) 231, 659, 673, 1178
HgaI GACGC 3 cut(s) 274, 312, 550
HhaI GCGC 4 cut(s) 277, 990, 1009, 1206
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 6 cut(s) 563, 917, 936, 976, 994, 1244
Hin6I GCGC 4 cut(s) 275, 988, 1007, 1204
HinP1I GCGC 4 cut(s) 275, 988, 1007, 1204
HinfI GANTC 4 cut(s) 167, 292, 1037, 1058
HpaII CCGG 4 cut(s) 231, 659, 673, 1178
HphI GGTGA 7 cut(s) 418, 433, 439, 550, 840, 1156, 1204
Hpy166II GTNNAC 3 cut(s) 738, 910, 997
Hpy188I TCNGA 7 cut(s) 187, 288, 526, 633, 685, 897, 1063
Hpy188III TCNNGA 3 cut(s) 694, 1046, 1142
Hpy8I GTNNAC 3 cut(s) 738, 910, 997
Hpy99I CGWCG 4 cut(s) 242, 248, 328, 442
HpyAV CCTTC 5 cut(s) 355, 475, 616, 848, 1021
HpyCH4III ACNGT 7 cut(s) 91, 817, 871, 907, 1001, 1138, 1151
HpyCH4IV ACGT 2 cut(s) 150, 425
HpyCH4V TGCA 6 cut(s) 307, 460, 725, 879, 1077, 1254
HpyF10VI GCNNNNNNNGC 4 cut(s) 240, 249, 274, 1013
HpyF3I CTNAG 3 cut(s) 885, 1062, 1172
HpySE526I ACGT 2 cut(s) 150, 425
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 6 cut(s) 563, 917, 936, 976, 994, 1244
HspAI GCGC 4 cut(s) 275, 988, 1007, 1204
KroI GCCGGC 1 cut(s) 672
KroNI GCCGGC 1 cut(s) 674
Kzo9I GATC 7 cut(s) 225, 550, 628, 655, 696, 916, 1053
LmnI GCTCC 4 cut(s) 239, 334, 367, 711
Lsp1109I GCAGC 3 cut(s) 264, 444, 1061
LweI GCATC 1 cut(s) 747
MaeII ACGT 2 cut(s) 150, 425
MaeIII GTNAC 5 cut(s) 421, 445, 538, 608, 1210
MalI GATC 7 cut(s) 227, 552, 630, 657, 698, 918, 1055
MbiI CCGCTC 1 cut(s) 337
MboI GATC 7 cut(s) 225, 550, 628, 655, 696, 916, 1053
MboII GAAGA 9 cut(s) 34, 37, 40, 53, 73, 93, 105, 718, 837
MflI RGATCY 1 cut(s) 696
MhlI GDGCHC 1 cut(s) 1192
MluCI AATT 5 cut(s) 415, 511, 589, 651, 1022
MlyI GAGTC 2 cut(s) 1046, 1052
MroNI GCCGGC 1 cut(s) 672
MseI TTAA 2 cut(s) 588, 1154
MslI CAYNNNNRTG 2 cut(s) 606, 905
MspI CCGG 4 cut(s) 231, 659, 673, 1178
MspR9I CCNGG 5 cut(s) 317, 660, 1018, 1098, 1179
MvaI CCWGG 3 cut(s) 317, 1018, 1098
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 4 cut(s) 240, 249, 274, 1013
NaeI GCCGGC 1 cut(s) 674
NciI CCSGG 2 cut(s) 660, 1179
NdeII GATC 7 cut(s) 225, 550, 628, 655, 696, 916, 1053
NgoMIV GCCGGC 1 cut(s) 672
NlaIII CATG 6 cut(s) 563, 917, 936, 976, 994, 1244
NlaIV GGNNCC 2 cut(s) 235, 369
NmeAIII GCCGAG 1 cut(s) 1255
NmuCI GTSAC 5 cut(s) 421, 445, 538, 608, 1210
OliI CACNNNNGTG 1 cut(s) 905
PdiI GCCGGC 1 cut(s) 674
PfeI GAWTC 2 cut(s) 167, 292
PflMI CCANNNNNTGG 1 cut(s) 991
PkrI GCNGC 7 cut(s) 251, 254, 339, 459, 466, 469, 1076
PleI GAGTC 2 cut(s) 1045, 1052
PpsI GAGTC 2 cut(s) 1045, 1052
PshAI GACNNNNGTC 1 cut(s) 443
PsiI TTATAA 1 cut(s) 650
Psp6I CCWGG 3 cut(s) 315, 1016, 1096
PspEI GGTNACC 1 cut(s) 445
PspFI CCCAGC 2 cut(s) 385, 795
PspGI CCWGG 3 cut(s) 315, 1016, 1096
PspN4I GGNNCC 2 cut(s) 235, 369
PspPI GGNCC 3 cut(s) 313, 411, 434
PstNI CAGNNNCTG 1 cut(s) 746
PsuI RGATCY 1 cut(s) 696
RsaI GTAC 4 cut(s) 281, 299, 428, 1114
RsaNI GTAC 4 cut(s) 280, 298, 427, 1113
RseI CAYNNNNRTG 2 cut(s) 606, 905
SaqAI TTAA 2 cut(s) 588, 1154
SatI GCNGC 7 cut(s) 250, 253, 338, 458, 465, 468, 1075
Sau3AI GATC 7 cut(s) 225, 550, 628, 655, 696, 916, 1053
Sau96I GGNCC 3 cut(s) 313, 411, 434
ScaI AGTACT 1 cut(s) 1114
SchI GAGTC 2 cut(s) 1046, 1052
ScrFI CCNGG 5 cut(s) 317, 660, 1018, 1098, 1179
SduI GDGCHC 1 cut(s) 1192
SfaNI GCATC 1 cut(s) 747
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 2 cut(s) 606, 905
SmlI CTYRAG 1 cut(s) 1116
SmoI CTYRAG 1 cut(s) 1116
Sse9I AATT 5 cut(s) 415, 511, 589, 651, 1022
SsiI CCGC 8 cut(s) 117, 249, 262, 329, 337, 401, 464, 467
StyD4I CCNGG 5 cut(s) 315, 658, 1016, 1096, 1177
StyI CCWWGG 2 cut(s) 45, 809
TaaI ACNGT 7 cut(s) 91, 817, 871, 907, 1001, 1138, 1151
TaiI ACGT 2 cut(s) 153, 428
TaqI TCGA 3 cut(s) 170, 777, 1056
TasI AATT 5 cut(s) 415, 511, 589, 651, 1022
TatI WGTACW 1 cut(s) 1112
TauI GCSGC 4 cut(s) 252, 340, 467, 470
TfiI GAWTC 2 cut(s) 167, 292
Tru1I TTAA 2 cut(s) 588, 1154
Tru9I TTAA 2 cut(s) 588, 1154
TscAI CASTG 3 cut(s) 309, 613, 874
TseFI GTSAC 5 cut(s) 421, 445, 538, 608, 1210
TseI GCWGC 3 cut(s) 252, 457, 1074
Tsp45I GTSAC 5 cut(s) 421, 445, 538, 608, 1210
TspDTI ATGAA 5 cut(s) 73, 548, 583, 916, 1229
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 3 cut(s) 309, 613, 874
Van91I CCANNNNNTGG 1 cut(s) 991
VpaK11BI GGWCC 1 cut(s) 313
XagI CCTNNNNNAGG 1 cut(s) 1015
XapI RAATTY 1 cut(s) 1022
XmiI GTMKAC 1 cut(s) 996
ZrmI AGTACT 1 cut(s) 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.