Prupe.7G242200_v2.0.a1

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0015513
Physical Location & Seq
Forward (+)
20778960 .. 20786302
7343 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G242200.1

Sequence Viewer

Length: 1260 bp
ATGGAGACCAACAAGCCACAGAAGAAAAAGAACTGGTTTTTACCATTGGTGCTTTCTTTGTTGTTATCTACTCTGCTCATATTTATCACTGTTTTCACTTCTTCTAGATCATCTTCTTCAAGATTGTACAAGACCCGTGTGAAGAATGAGCTCCCGCATTTTGTGGAGTCCAAGTTAAAGGTTTCAGCTACCTCCAAAGACCCAGTACCAAGACTGGCTTACTTGATCTCTGGCTCAATGGGCGACGGCGAGAGCTTGAAGAGGACCTTGAAGGCTCTGTACCATCCCAGGAATCAATATGCAGTGCATTTGGACCTCGAGGCTTCGGCTGAGGAGAGGATGGACTTGGCCAAGTTTGTCAAGAATGAGCCGCTGTTTACCAAATTGGGTAATGTTAGAGCGGTTGTGAGGGCCAATTTGGTAACTTACAGAGGCCCTACTATGGTTACCAATACACTTCACGCTGCGGCGATTTTGTTGAAGGAAGGTGGAGATTGGGATTGGTTTATCAATTTGAGTGCTTCCGATTATCCTTTAGTGACCCAAGATGATCTGCTTCATGTCTTGTCATCCATTCCAAGAAATCTTAATTTTATTGAGCATACCAGTGACATTGGCTGGAAGGAGAATCAGAGGGCAAAACCCGTTATAATTGATCCAGGGCTGTATAGCCTGCAAAAATCAGATGTATTCTGGGTTTCAGAGAAAAGGAGCGTGCCAACTGCATATAAGTTGTTTACAGGTTCTGCTTGGATGATGCTCTCCCGCCCTTTTATAGAGTATATTTTATGGGGTTGGGACAACCTCCCAAGGATAGTGCTTATGTATTATGCCAACTTTCTTTCTTCACCAGAAGGGTATTTCCACACTGTCATCTGCAATGCTGAGGAGTTTCGGAACACTACTGTGAACCATGATCTCCACTTCATATCATGGGACACCCCGCCAAAACAACATCCACATTTCCTCGTCAGTGATGACTTCCAGCGGATGGTAGACAGCAATGCTCCCTTCGCCAGGAAGTTTGGCAGGAATGAGTCAGTTCTTGACAAGATCGACTCTGAGCTTTTAGGCTGCAATGCCGATGGATTTGTACCAGGTGGATGGTTCGGTACTCAAGGAAATGCAAATGTAACTGTTCCAGATTACAATTTAAAAAACATCACCACTTTTAGGCCGGGTCCAGGTGCTGAAAGGCTAAAACGTCTCATCACTGGTTTGATATCTGCAGAGGATTTTCACGCAAAGCAATGCACCTGA

Protein Analysis

420

Amino Acids

47.59

Weight (kDa)

8.88

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015513)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03340
malus_domestica MD02G1033100.v1.1 MD15G1173500.v1.1
prunus_persica Prupe.7G242200_v2.0.a1 Prupe.7G242200_v2.0.a1
pyrus_communis pycom02g02720 pycom15g15550
rosa_chinensis RchiOBHm_Chr2g0088581
rosa_laevigata RLG00000015967
rosa_roxburghii Rroxscaffold_2G00152530
rosa_rugosa Rorug01G0485300
rosa_samantha Rh2AG040400 Rh2BG039300 Rh2CG040000 Rh2DG039600
rosa_wichuraiana Rw2G003150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 650
AbsI CCTCGAGG 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 991
AccBSI CCGCTC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 996
AciI CCGC 7 cut(s) 155, 371, 401, 467, 766, 944, 988
AclWI GGATC 1 cut(s) 650
AcoI YGGCCR 1 cut(s) 348
AfaI GTAC 5 cut(s) 128, 207, 281, 1095, 1114
AfiI CCNNNNNNNGG 5 cut(s) 442, 991, 1017, 1173, 1184
AgsI TTSAA 4 cut(s) 120, 259, 271, 481
AjnI CCWGG 5 cut(s) 287, 658, 1016, 1096, 1183
AleI CACNNNNGTG 1 cut(s) 905
AluBI AGCT 4 cut(s) 151, 188, 255, 1066
AluI AGCT 4 cut(s) 151, 188, 255, 1066
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 1211
AlwI GGATC 1 cut(s) 650
AlwNI CAGNNNCTG 2 cut(s) 746, 1190
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 4 cut(s) 348, 411, 433, 1175
ApeKI GCWGC 2 cut(s) 464, 1074
AspS9I GGNCC 5 cut(s) 264, 313, 411, 434, 1181
AsuC2I CCSGG 1 cut(s) 1179
AsuHPI GGTGA 2 cut(s) 840, 1156
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 3 cut(s) 264, 313, 1181
BalI TGGCCA 1 cut(s) 350
BanII GRGCYC 1 cut(s) 153
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
Bbv12I GWGCWC 1 cut(s) 153
BbvCI CCTCAGC 2 cut(s) 330, 885
BbvI GCAGC 2 cut(s) 451, 1061
BccI CCATC 5 cut(s) 291, 334, 985, 1079, 1098
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 5 cut(s) 289, 660, 1018, 1098, 1185
BcnI CCSGG 1 cut(s) 1179
BcoDI GTCTC 1 cut(s) 1211
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 1227
BisI GCNGC 4 cut(s) 371, 465, 468, 1075
BlsI GCNGC 4 cut(s) 372, 466, 469, 1076
Bme1390I CCNGG 6 cut(s) 289, 660, 1018, 1098, 1179, 1185
Bme18I GGWCC 3 cut(s) 264, 313, 1181
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 5 cut(s) 264, 313, 411, 434, 1181
BmiI GGNNCC 1 cut(s) 1182
BmrFI CCNGG 6 cut(s) 289, 660, 1018, 1098, 1179, 1185
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 747
BmuI ACTGGG 1 cut(s) 197
Bpu10I CCTNAGC 2 cut(s) 330, 885
BpuEI CTTGAG 1 cut(s) 1101
BpuMI CCSGG 1 cut(s) 1179
BsaJI CCNNGG 3 cut(s) 287, 659, 809
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 5 cut(s) 442, 991, 1017, 1173, 1184
Bse1I ACTGG 5 cut(s) 38, 203, 219, 606, 1219
Bse3DI GCAATG 4 cut(s) 886, 1009, 1084, 1256
BseBI CCWGG 5 cut(s) 289, 660, 1018, 1098, 1185
BseDI CCNNGG 3 cut(s) 287, 659, 809
BseGI GGATG 7 cut(s) 283, 345, 569, 759, 955, 996, 1109
BseLI CCNNNNNNNGG 5 cut(s) 442, 991, 1017, 1173, 1184
BseMI GCAATG 4 cut(s) 886, 1009, 1084, 1256
BseMII CTCAG 3 cut(s) 321, 876, 1053
BseNI ACTGG 5 cut(s) 38, 203, 219, 606, 1219
BseRI GAGGAG 2 cut(s) 347, 902
BseXI GCAGC 2 cut(s) 451, 1061
BshFI GGCC 4 cut(s) 350, 413, 435, 1177
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 1 cut(s) 1178
BslFI GGGAC 2 cut(s) 812, 950
BslI CCNNNNNNNGG 5 cut(s) 442, 991, 1017, 1173, 1184
BsmAI GTCTC 1 cut(s) 1211
BsmBI CGTCTC 1 cut(s) 1211
BsmFI GGGAC 2 cut(s) 812, 950
BsnI GGCC 4 cut(s) 350, 413, 435, 1177
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 153
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 6 cut(s) 107, 225, 550, 655, 916, 1053
BspACI CCGC 7 cut(s) 155, 371, 401, 467, 766, 944, 988
BspANI GGCC 4 cut(s) 350, 413, 435, 1177
BspCNI CTCAG 3 cut(s) 322, 877, 1054
BspLI GGNNCC 1 cut(s) 1182
BspMAI CTGCAG 1 cut(s) 1231
BspPI GGATC 1 cut(s) 650
BsrBI CCGCTC 1 cut(s) 401
BsrDI GCAATG 4 cut(s) 886, 1009, 1084, 1256
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 5 cut(s) 38, 203, 219, 606, 1219
BssECI CCNNGG 3 cut(s) 287, 659, 809
BssMI GATC 6 cut(s) 107, 225, 550, 655, 916, 1053
BssT1I CCWWGG 1 cut(s) 809
Bst2UI CCWGG 5 cut(s) 289, 660, 1018, 1098, 1185
Bst4CI ACNGT 4 cut(s) 91, 871, 907, 1138
Bst6I CTCTTC 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 674, 716
BstDEI CTNAG 3 cut(s) 330, 885, 1062
BstEII GGTNACC 1 cut(s) 445
BstENI CCTNNNNNAGG 1 cut(s) 1015
BstF5I GGATG 7 cut(s) 283, 345, 569, 759, 955, 996, 1109
BstKTI GATC 6 cut(s) 110, 228, 553, 658, 919, 1056
BstMAI GTCTC 1 cut(s) 1211
BstMBI GATC 6 cut(s) 107, 225, 550, 655, 916, 1053
BstMWI GCNNNNNNNGC 2 cut(s) 240, 1013
BstNI CCWGG 5 cut(s) 289, 660, 1018, 1098, 1185
BstPI GGTNACC 1 cut(s) 445
BstSCI CCNGG 6 cut(s) 287, 658, 1016, 1096, 1177, 1183
BstSFI CTRYAG 1 cut(s) 1227
BstV1I GCAGC 2 cut(s) 451, 1061
BstXI CCANNNNNNTGG 1 cut(s) 1104
BsuRI GGCC 4 cut(s) 350, 413, 435, 1177
BtsCI GGATG 7 cut(s) 283, 345, 569, 759, 955, 996, 1109
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 6 cut(s) 87, 309, 613, 867, 979, 1212
Cac8I GCNNGC 2 cut(s) 674, 716
CaiI CAGNNNCTG 2 cut(s) 746, 1190
Cfr13I GGNCC 5 cut(s) 264, 313, 411, 434, 1181
CsiI ACCWGGT 1 cut(s) 1096
Csp6I GTAC 5 cut(s) 127, 206, 280, 1094, 1113
CviAII CATG 3 cut(s) 560, 914, 933
CviQI GTAC 5 cut(s) 127, 206, 280, 1094, 1113
DdeI CTNAG 3 cut(s) 330, 885, 1062
DpnI GATC 6 cut(s) 109, 227, 552, 657, 918, 1055
DpnII GATC 6 cut(s) 107, 225, 550, 655, 916, 1053
DraI TTTAAA 1 cut(s) 1155
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 809
Eco24I GRGCYC 1 cut(s) 153
Eco32I GATATC 1 cut(s) 1224
Eco47I GGWCC 3 cut(s) 264, 313, 1181
Eco53kI GAGCTC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 317
Eco91I GGTNACC 1 cut(s) 445
EcoICRI GAGCTC 1 cut(s) 151
EcoNI CCTNNNNNAGG 1 cut(s) 1015
EcoO109I RGGNCCY 2 cut(s) 264, 434
EcoO65I GGTNACC 1 cut(s) 445
EcoRII CCWGG 5 cut(s) 287, 658, 1016, 1096, 1183
EcoRV GATATC 1 cut(s) 1224
EcoT14I CCWWGG 1 cut(s) 809
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 809
Esp3I CGTCTC 1 cut(s) 1211
FaeI CATG 3 cut(s) 563, 917, 936
FalI AAGNNNNNCTT 4 cut(s) 202, 234, 251, 283
FaqI GGGAC 2 cut(s) 812, 950
FatI CATG 3 cut(s) 559, 913, 932
FauI CCCGC 3 cut(s) 162, 773, 951
FblI GTMKAC 1 cut(s) 996
Fnu4HI GCNGC 4 cut(s) 371, 465, 468, 1075
FokI GGATG 7 cut(s) 270, 352, 556, 766, 942, 1003, 1116
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 4 cut(s) 371, 465, 468, 1075
FspBI CTAG 1 cut(s) 105
GluI GCNGC 4 cut(s) 371, 465, 468, 1075
HaeIII GGCC 4 cut(s) 350, 413, 435, 1177
HapII CCGG 1 cut(s) 1178
Hin1II CATG 3 cut(s) 563, 917, 936
HinfI GANTC 5 cut(s) 167, 292, 628, 1037, 1058
HpaII CCGG 1 cut(s) 1178
HphI GGTGA 2 cut(s) 840, 1156
Hpy166II GTNNAC 4 cut(s) 378, 738, 910, 997
Hpy188I TCNGA 6 cut(s) 526, 633, 685, 703, 897, 1063
Hpy188III TCNNGA 5 cut(s) 105, 120, 361, 1046, 1142
Hpy8I GTNNAC 4 cut(s) 378, 738, 910, 997
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 6 cut(s) 265, 475, 479, 616, 848, 1021
HpyCH4III ACNGT 4 cut(s) 91, 871, 907, 1138
HpyCH4IV ACGT 1 cut(s) 1204
HpyCH4V TGCA 9 cut(s) 302, 307, 676, 725, 879, 1077, 1127, 1229, 1254
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 1013
HpyF3I CTNAG 3 cut(s) 330, 885, 1062
HpySE526I ACGT 1 cut(s) 1204
Hsp92II CATG 3 cut(s) 563, 917, 936
Kzo9I GATC 6 cut(s) 107, 225, 550, 655, 916, 1053
LmnI GCTCC 3 cut(s) 156, 711, 1012
Lsp1109I GCAGC 2 cut(s) 451, 1061
LweI GCATC 1 cut(s) 747
MabI ACCWGGT 1 cut(s) 1096
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 1204
MaeIII GTNAC 5 cut(s) 421, 445, 538, 608, 1132
MalI GATC 6 cut(s) 109, 227, 552, 657, 918, 1055
MbiI CCGCTC 1 cut(s) 401
MboI GATC 6 cut(s) 107, 225, 550, 655, 916, 1053
MboII GAAGA 7 cut(s) 34, 93, 105, 108, 154, 271, 837
MhlI GDGCHC 1 cut(s) 153
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 6 cut(s) 383, 415, 511, 589, 651, 1150
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 3 cut(s) 176, 1046, 1052
Mox20I TGGCCA 1 cut(s) 350
MscI TGGCCA 1 cut(s) 350
MseI TTAA 3 cut(s) 176, 588, 1154
MslI CAYNNNNRTG 2 cut(s) 606, 905
Msp20I TGGCCA 1 cut(s) 350
MspA1I CMGCKG 2 cut(s) 373, 988
MspI CCGG 1 cut(s) 1178
MspR9I CCNGG 6 cut(s) 289, 660, 1018, 1098, 1179, 1185
MvaI CCWGG 5 cut(s) 289, 660, 1018, 1098, 1185
MwoI GCNNNNNNNGC 2 cut(s) 240, 1013
NciI CCSGG 1 cut(s) 1179
NdeII GATC 6 cut(s) 107, 225, 550, 655, 916, 1053
NlaIII CATG 3 cut(s) 563, 917, 936
NlaIV GGNNCC 1 cut(s) 1182
NmuCI GTSAC 2 cut(s) 538, 608
OliI CACNNNNGTG 1 cut(s) 905
PaeR7I CTCGAG 1 cut(s) 317
PfeI GAWTC 2 cut(s) 292, 628
PflMI CCANNNNNTGG 1 cut(s) 991
PkrI GCNGC 4 cut(s) 372, 466, 469, 1076
PleI GAGTC 3 cut(s) 175, 1045, 1052
PpsI GAGTC 3 cut(s) 175, 1045, 1052
PpuMI RGGWCCY 1 cut(s) 264
PsiI TTATAA 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 264
Psp6I CCWGG 5 cut(s) 287, 658, 1016, 1096, 1183
PspEI GGTNACC 1 cut(s) 445
PspGI CCWGG 5 cut(s) 287, 658, 1016, 1096, 1183
PspN4I GGNNCC 1 cut(s) 1182
PspPI GGNCC 5 cut(s) 264, 313, 411, 434, 1181
PspPPI RGGWCCY 1 cut(s) 264
PspXI VCTCGAGB 1 cut(s) 317
PstI CTGCAG 1 cut(s) 1231
PstNI CAGNNNCTG 2 cut(s) 746, 1190
RsaI GTAC 5 cut(s) 128, 207, 281, 1095, 1114
RsaNI GTAC 5 cut(s) 127, 206, 280, 1094, 1113
RseI CAYNNNNRTG 2 cut(s) 606, 905
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 3 cut(s) 176, 588, 1154
SatI GCNGC 4 cut(s) 371, 465, 468, 1075
Sau3AI GATC 6 cut(s) 107, 225, 550, 655, 916, 1053
Sau96I GGNCC 5 cut(s) 264, 313, 411, 434, 1181
SchI GAGTC 3 cut(s) 176, 1046, 1052
ScrFI CCNGG 6 cut(s) 289, 660, 1018, 1098, 1179, 1185
SduI GDGCHC 1 cut(s) 153
SexAI ACCWGGT 1 cut(s) 1096
SfaNI GCATC 1 cut(s) 747
SfcI CTRYAG 1 cut(s) 1227
Sfr274I CTCGAG 1 cut(s) 317
SinI GGWCC 3 cut(s) 264, 313, 1181
SlaI CTCGAG 1 cut(s) 317
SmiMI CAYNNNNRTG 2 cut(s) 606, 905
SmlI CTYRAG 2 cut(s) 317, 1116
SmoI CTYRAG 2 cut(s) 317, 1116
Sse9I AATT 6 cut(s) 383, 415, 511, 589, 651, 1150
SsiI CCGC 7 cut(s) 155, 371, 401, 467, 766, 944, 988
SspMI CTAG 1 cut(s) 105
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 6 cut(s) 287, 658, 1016, 1096, 1177, 1183
StyI CCWWGG 1 cut(s) 809
TaaI ACNGT 4 cut(s) 91, 871, 907, 1138
TaiI ACGT 1 cut(s) 1207
TaqI TCGA 2 cut(s) 318, 1056
TasI AATT 6 cut(s) 383, 415, 511, 589, 651, 1150
TatI WGTACW 1 cut(s) 126
TauI GCSGC 2 cut(s) 373, 470
TfiI GAWTC 2 cut(s) 292, 628
Tru1I TTAA 3 cut(s) 176, 588, 1154
Tru9I TTAA 3 cut(s) 176, 588, 1154
TscAI CASTG 6 cut(s) 94, 309, 613, 874, 979, 1219
TseFI GTSAC 2 cut(s) 538, 608
TseI GCWGC 2 cut(s) 464, 1074
Tsp45I GTSAC 2 cut(s) 538, 608
TspDTI ATGAA 2 cut(s) 548, 916
TspRI CASTG 6 cut(s) 94, 309, 613, 874, 979, 1219
Van91I CCANNNNNTGG 1 cut(s) 991
VpaK11BI GGWCC 3 cut(s) 264, 313, 1181
XagI CCTNNNNNAGG 1 cut(s) 1015
XbaI TCTAGA 1 cut(s) 104
XhoI CTCGAG 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 996
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.