Rh2CG040000

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015513
Physical Location & Seq
Reverse (-)
3197396 .. 3202935
5540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG040000.1

Sequence Viewer

Length: 1257 bp
ATGGAAACCAGCAAGGCGCAGAAGAAAAAGAAGTGGTTTTTACCACTAGTGCTGTCTCTCCTCCTATCTACTTTCCTCATCTTCATCACTGTCTTCACTTCAAGCTCATCTGCTTCAAGATTGTACAAGGCCCATGTGAGAAATGACATCCCACACTTCGTGGAGTCAAAGCTCAAGGTTTCGGATACTAACAAGGACCCAGTACCCAGATTGGCTTACTTGATCTCCGGCTCAATGGGGGACGGCGAGAGCTTGAAGAGGACACTCAAGGCTCTGTACCATCCGAGGAACCAGTACGCTGTGCACTTGGACCTTGAAGCTTCGGCGGAGGAGAGGTTGGAGTTGGTTAGGTTTGTGAGGAATGAGCCCATGTTTGAGAAGCTCGGGAATGTCAGAGTGGTTGTGAGGGCTAATTTGGTGACCTACAGAGGGCCAACAATGGTGACTAATACGCTTCATGCCGCGGCGATTTTGTTGAAGGAAGGTGGAAAGTGGGATTGGTTTATTAATTTGAGTGCTTCTGATTATCCTTTAGTGACCCAAGATGATATGCTTCATGTCTTGTCATCCATTCCGAGAACTCTCAACTTTATAGAGCATACCAGTGACATCGGCTGGAAGGAGTATCAGAGGGCAAAACCAGTTATAATTGACCCAGGGCTGTATAGTGTACAAAAGTCAGATGTATTCTGGGTGACAGAGAAAAGGAGCGTTCCAAGTGCGTATAAGCTGTTTACAGGTTCTGCTTGGATGATGCTTTCCCGTCCTTTTGTGGAATACATGGTTTGGGGGTGGGACAACCTCCCAAGGATAGTCCTTATGTATTATGCCAACTTTCTTTCTTCACCAGAAGGGTATTTCCACACAGTCATCTGTAATGCTGAGGAGTTTCGAAACACTACTGTGAGCCATGATCTTCACTTCATATCATGGGACAACCCCCCGAAACAACATCCACATTTCCTCACCGCTGATGACTACCAGCGCATGGTAGACAGTAATGCACCCTTCGCCAGGAAATTTGGCAGGAACGAGTCGGTTTTAAGCAAGATCGACTCTGAGCTTTTAGGCTGCAATGCTGATGGGTATGTACCAGGAGGATGGCTCAGTACTGGAGCAAATGCAAATGCTACTCTTCCGGATTACACAATAAAAAATGTGACCACTCTTAGGCCAGGTCCTGGTGCTGAAAGACTAAAACGTCTCATCACTGGTTTGTTATCTGCAGAGGATTTTCATGCGAAGCAATGCACCTGA

Protein Analysis

418

Amino Acids

47.49

Weight (kDa)

8.86

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 71 - 330 3.4e-78 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015513)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03340
malus_domestica MD02G1033100.v1.1 MD15G1173500.v1.1
prunus_persica Prupe.7G242200_v2.0.a1 Prupe.7G242200_v2.0.a1
pyrus_communis pycom02g02720 pycom15g15550
rosa_chinensis RchiOBHm_Chr2g0088581
rosa_laevigata RLG00000015967
rosa_roxburghii Rroxscaffold_2G00152530
rosa_rugosa Rorug01G0485300
rosa_samantha Rh2AG040400 Rh2BG039300 Rh2CG040000 Rh2DG039600
rosa_wichuraiana Rw2G003150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 647
AasI GACNNNNNNGTC 1 cut(s) 1200
AccB7I CCANNNNNTGG 2 cut(s) 988, 1181
AccI GTMKAC 1 cut(s) 993
AccII CGCG 1 cut(s) 464
AccIII TCCGGA 1 cut(s) 1138
AciI CCGC 4 cut(s) 326, 462, 464, 969
AcsI RAATTY 1 cut(s) 1019
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 7 cut(s) 125, 204, 278, 296, 672, 1092, 1111
AfiI CCNNNNNNNGG 5 cut(s) 429, 988, 1014, 1170, 1181
AgsI TTSAA 5 cut(s) 102, 117, 256, 317, 478
AhlI ACTAGT 1 cut(s) 46
AjnI CCWGG 5 cut(s) 655, 1013, 1093, 1174, 1180
AjuI GAANNNNNNNTTGG 2 cut(s) 481, 513
AleI CACNNNNGTG 1 cut(s) 902
AluBI AGCT 7 cut(s) 105, 172, 252, 320, 382, 730, 1063
AluI AGCT 7 cut(s) 105, 172, 252, 320, 382, 730, 1063
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 60, 1208
Alw44I GTGCAC 1 cut(s) 302
AlwNI CAGNNNCTG 2 cut(s) 743, 1181
Ama87I CYCGRG 1 cut(s) 383
Aor13HI TCCGGA 1 cut(s) 1138
AoxI GGCC 3 cut(s) 129, 431, 1172
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 1071
ApoI RAATTY 1 cut(s) 1019
AseI ATTAAT 1 cut(s) 507
AspLEI GCGC 2 cut(s) 19, 987
AspS9I GGNCC 5 cut(s) 130, 196, 310, 431, 1178
AsuHPI GGTGA 5 cut(s) 430, 454, 706, 837, 958
AsuII TTCGAA 1 cut(s) 892
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 3 cut(s) 196, 310, 1178
BaeGI GKGCMC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 306
BbvCI CCTCAGC 1 cut(s) 882
BbvI GCAGC 1 cut(s) 1058
BccI CCATC 3 cut(s) 288, 1076, 1095
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 5 cut(s) 657, 1015, 1095, 1176, 1182
BciVI GTATCC 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 60, 1208
BcuI ACTAGT 1 cut(s) 46
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 2 cut(s) 424, 1224
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 3 cut(s) 462, 465, 1072
BlsI GCNGC 3 cut(s) 463, 466, 1073
BmcAI AGTACT 1 cut(s) 1111
Bme1390I CCNGG 5 cut(s) 657, 1015, 1095, 1176, 1182
Bme18I GGWCC 3 cut(s) 196, 310, 1178
BmeT110I CYCGRG 1 cut(s) 383
BmgT120I GGNCC 5 cut(s) 130, 196, 310, 431, 1178
BmiI GGNNCC 2 cut(s) 198, 290
BmrFI CCNGG 5 cut(s) 657, 1015, 1095, 1176, 1182
BmrI ACTGGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 744
BmuI ACTGGG 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 85
BplI GAGNNNNNCTC 2 cut(s) 1089, 1121
BpmI CTGGAG 1 cut(s) 1134
Bpu10I CCTNAGC 1 cut(s) 882
Bpu14I TTCGAA 1 cut(s) 892
BpuEI CTTGAG 2 cut(s) 158, 251
BsaJI CCNNGG 5 cut(s) 284, 462, 655, 656, 806
BsaWI WCCGGW 1 cut(s) 1138
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 320, 350
Bsc4I CCNNNNNNNGG 5 cut(s) 429, 988, 1014, 1170, 1181
Bse1I ACTGG 6 cut(s) 200, 292, 603, 641, 1117, 1216
Bse3DI GCAATG 2 cut(s) 1081, 1253
BseAI TCCGGA 1 cut(s) 1138
BseBI CCWGG 5 cut(s) 657, 1015, 1095, 1176, 1182
BseDI CCNNGG 5 cut(s) 284, 462, 655, 656, 806
BseGI GGATG 6 cut(s) 147, 280, 566, 756, 952, 1106
BseLI CCNNNNNNNGG 5 cut(s) 429, 988, 1014, 1170, 1181
BseMI GCAATG 2 cut(s) 1081, 1253
BseMII CTCAG 3 cut(s) 873, 1050, 1120
BseNI ACTGG 6 cut(s) 200, 292, 603, 641, 1117, 1216
BseRI GAGGAG 3 cut(s) 50, 344, 899
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 1058
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 3 cut(s) 131, 433, 1174
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 2 cut(s) 228, 1139
BslFI GGGAC 3 cut(s) 254, 809, 947
BslI CCNNNNNNNGG 5 cut(s) 429, 988, 1014, 1170, 1181
BsmAI GTCTC 2 cut(s) 60, 1208
BsmBI CGTCTC 1 cut(s) 1208
BsmFI GGGAC 3 cut(s) 254, 809, 947
BsnI GGCC 3 cut(s) 131, 433, 1174
BsoBI CYCGRG 1 cut(s) 383
Bsp119I TTCGAA 1 cut(s) 892
Bsp1286I GDGCHC 2 cut(s) 306, 369
Bsp13I TCCGGA 1 cut(s) 1138
Bsp1407I TGTACA 2 cut(s) 123, 670
Bsp143I GATC 3 cut(s) 222, 913, 1050
BspACI CCGC 4 cut(s) 326, 462, 464, 969
BspANI GGCC 3 cut(s) 131, 433, 1174
BspCNI CTCAG 3 cut(s) 874, 1051, 1119
BspEI TCCGGA 1 cut(s) 1138
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 2 cut(s) 198, 290
BspMAI CTGCAG 1 cut(s) 1228
BspT104I TTCGAA 1 cut(s) 892
BsrDI GCAATG 2 cut(s) 1081, 1253
BsrGI TGTACA 2 cut(s) 123, 670
BsrI ACTGG 6 cut(s) 200, 292, 603, 641, 1117, 1216
BssECI CCNNGG 5 cut(s) 284, 462, 655, 656, 806
BssMI GATC 3 cut(s) 222, 913, 1050
BssT1I CCWWGG 1 cut(s) 806
Bst2UI CCWGG 5 cut(s) 657, 1015, 1095, 1176, 1182
Bst4CI ACNGT 4 cut(s) 91, 868, 904, 998
Bst6I CTCTTC 2 cut(s) 251, 1140
BstAUI TGTACA 2 cut(s) 123, 670
BstBI TTCGAA 1 cut(s) 892
BstDEI CTNAG 4 cut(s) 882, 1059, 1106, 1169
BstDSI CCRYGG 1 cut(s) 462
BstEII GGTNACC 1 cut(s) 418
BstENI CCTNNNNNAGG 1 cut(s) 1012
BstF5I GGATG 6 cut(s) 147, 280, 566, 756, 952, 1106
BstFNI CGCG 1 cut(s) 464
BstHHI GCGC 2 cut(s) 19, 987
BstKTI GATC 3 cut(s) 225, 916, 1053
BstMAI GTCTC 2 cut(s) 60, 1208
BstMBI GATC 3 cut(s) 222, 913, 1050
BstMWI GCNNNNNNNGC 1 cut(s) 1010
BstNI CCWGG 5 cut(s) 657, 1015, 1095, 1176, 1182
BstPI GGTNACC 1 cut(s) 418
BstSCI CCNGG 5 cut(s) 655, 1013, 1093, 1174, 1180
BstSFI CTRYAG 2 cut(s) 424, 1224
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 1058
BstV2I GAAGAC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 1101
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 3 cut(s) 131, 433, 1174
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 6 cut(s) 147, 280, 566, 756, 952, 1106
BtsIMutI CAGTG 3 cut(s) 87, 610, 1209
CaiI CAGNNNCTG 2 cut(s) 743, 1181
CfoI GCGC 2 cut(s) 19, 987
Cfr13I GGNCC 5 cut(s) 130, 196, 310, 431, 1178
Cfr42I CCGCGG 1 cut(s) 465
Csp6I GTAC 7 cut(s) 124, 203, 277, 295, 671, 1091, 1110
CviAII CATG 9 cut(s) 134, 370, 458, 557, 781, 911, 930, 988, 1238
CviQI GTAC 7 cut(s) 124, 203, 277, 295, 671, 1091, 1110
DdeI CTNAG 4 cut(s) 882, 1059, 1106, 1169
DpnI GATC 3 cut(s) 224, 915, 1052
DpnII GATC 3 cut(s) 222, 913, 1050
DraIII CACNNNGTG 1 cut(s) 160
DrdI GACNNNNNNGTC 1 cut(s) 1200
DseDI GACNNNNNNGTC 1 cut(s) 1200
Eam1104I CTCTTC 2 cut(s) 251, 1140
EarI CTCTTC 2 cut(s) 251, 1140
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 806
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 3 cut(s) 196, 310, 1178
Eco88I CYCGRG 1 cut(s) 383
Eco91I GGTNACC 1 cut(s) 418
EcoNI CCTNNNNNAGG 1 cut(s) 1012
EcoO109I RGGNCCY 2 cut(s) 196, 1178
EcoO65I GGTNACC 1 cut(s) 418
EcoRII CCWGG 5 cut(s) 655, 1013, 1093, 1174, 1180
EcoT14I CCWWGG 1 cut(s) 806
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 806
Esp3I CGTCTC 1 cut(s) 1208
FaeI CATG 9 cut(s) 137, 373, 461, 560, 784, 914, 933, 991, 1241
FaqI GGGAC 3 cut(s) 254, 809, 947
FatI CATG 9 cut(s) 133, 369, 457, 556, 780, 910, 929, 987, 1237
FblI GTMKAC 1 cut(s) 993
Fnu4HI GCNGC 3 cut(s) 462, 465, 1072
FokI GGATG 6 cut(s) 134, 267, 553, 763, 939, 1113
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 3 cut(s) 462, 465, 1072
FspBI CTAG 1 cut(s) 47
GlaI GCGC 2 cut(s) 18, 986
GluI GCNGC 3 cut(s) 462, 465, 1072
GsuI CTGGAG 1 cut(s) 1134
HaeIII GGCC 3 cut(s) 131, 433, 1174
HapII CCGG 2 cut(s) 228, 1139
HhaI GCGC 2 cut(s) 19, 987
Hin1II CATG 9 cut(s) 137, 373, 461, 560, 784, 914, 933, 991, 1241
Hin6I GCGC 2 cut(s) 17, 985
HinP1I GCGC 2 cut(s) 17, 985
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 3 cut(s) 164, 1034, 1055
HpaII CCGG 2 cut(s) 228, 1139
HphI GGTGA 5 cut(s) 430, 454, 706, 837, 958
Hpy166II GTNNAC 4 cut(s) 304, 671, 735, 994
Hpy188I TCNGA 8 cut(s) 184, 285, 395, 523, 576, 630, 682, 1060
Hpy188III TCNNGA 3 cut(s) 117, 385, 1139
Hpy8I GTNNAC 4 cut(s) 304, 671, 735, 994
HpyAV CCTTC 5 cut(s) 472, 476, 613, 845, 1018
HpyCH4III ACNGT 4 cut(s) 91, 868, 904, 998
HpyCH4IV ACGT 1 cut(s) 1201
HpyCH4V TGCA 6 cut(s) 304, 1004, 1074, 1124, 1226, 1251
HpyF10VI GCNNNNNNNGC 1 cut(s) 1010
HpyF3I CTNAG 4 cut(s) 882, 1059, 1106, 1169
HpySE526I ACGT 1 cut(s) 1201
Hsp92II CATG 9 cut(s) 137, 373, 461, 560, 784, 914, 933, 991, 1241
HspAI GCGC 2 cut(s) 17, 985
Kpn2I TCCGGA 1 cut(s) 1138
KspI CCGCGG 1 cut(s) 465
Kzo9I GATC 3 cut(s) 222, 913, 1050
LmnI GCTCC 2 cut(s) 708, 1115
Lsp1109I GCAGC 1 cut(s) 1058
LweI GCATC 1 cut(s) 744
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 1201
MaeIII GTNAC 6 cut(s) 418, 442, 535, 605, 694, 1159
MalI GATC 3 cut(s) 224, 915, 1052
MboI GATC 3 cut(s) 222, 913, 1050
MboII GAAGA 7 cut(s) 34, 73, 85, 268, 834, 908, 1127
MhlI GDGCHC 2 cut(s) 306, 369
MluCI AATT 4 cut(s) 412, 508, 648, 1019
MlyI GAGTC 3 cut(s) 173, 1043, 1049
MmeI TCCRAC 1 cut(s) 318
MroI TCCGGA 1 cut(s) 1138
MseI TTAA 2 cut(s) 507, 1043
MslI CAYNNNNRTG 2 cut(s) 603, 902
MspA1I CMGCKG 2 cut(s) 464, 971
MspI CCGG 2 cut(s) 228, 1139
MspR9I CCNGG 5 cut(s) 657, 1015, 1095, 1176, 1182
MvaI CCWGG 5 cut(s) 657, 1015, 1095, 1176, 1182
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 1 cut(s) 1010
NdeII GATC 3 cut(s) 222, 913, 1050
NlaIII CATG 9 cut(s) 137, 373, 461, 560, 784, 914, 933, 991, 1241
NlaIV GGNNCC 2 cut(s) 198, 290
NmuCI GTSAC 6 cut(s) 418, 442, 535, 605, 694, 1159
NspV TTCGAA 1 cut(s) 892
OliI CACNNNNGTG 1 cut(s) 902
PasI CCCWGGG 1 cut(s) 656
PflMI CCANNNNNTGG 2 cut(s) 988, 1181
PkrI GCNGC 3 cut(s) 463, 466, 1073
PleI GAGTC 3 cut(s) 172, 1042, 1049
PpsI GAGTC 3 cut(s) 172, 1042, 1049
PpuMI RGGWCCY 2 cut(s) 196, 1178
PshBI ATTAAT 1 cut(s) 507
PsiI TTATAA 1 cut(s) 647
Psp5II RGGWCCY 2 cut(s) 196, 1178
Psp6I CCWGG 5 cut(s) 655, 1013, 1093, 1174, 1180
PspEI GGTNACC 1 cut(s) 418
PspGI CCWGG 5 cut(s) 655, 1013, 1093, 1174, 1180
PspN4I GGNNCC 2 cut(s) 198, 290
PspPI GGNCC 5 cut(s) 130, 196, 310, 431, 1178
PspPPI RGGWCCY 2 cut(s) 196, 1178
PstI CTGCAG 1 cut(s) 1228
PstNI CAGNNNCTG 2 cut(s) 743, 1181
RsaI GTAC 7 cut(s) 125, 204, 278, 296, 672, 1092, 1111
RsaNI GTAC 7 cut(s) 124, 203, 277, 295, 671, 1091, 1110
RseI CAYNNNNRTG 2 cut(s) 603, 902
SacII CCGCGG 1 cut(s) 465
SaqAI TTAA 2 cut(s) 507, 1043
SatI GCNGC 3 cut(s) 462, 465, 1072
Sau3AI GATC 3 cut(s) 222, 913, 1050
Sau96I GGNCC 5 cut(s) 130, 196, 310, 431, 1178
ScaI AGTACT 1 cut(s) 1111
SchI GAGTC 3 cut(s) 173, 1043, 1049
ScrFI CCNGG 5 cut(s) 657, 1015, 1095, 1176, 1182
SduI GDGCHC 2 cut(s) 306, 369
SfaNI GCATC 1 cut(s) 744
SfcI CTRYAG 2 cut(s) 424, 1224
Sfr303I CCGCGG 1 cut(s) 465
SfuI TTCGAA 1 cut(s) 892
SgrBI CCGCGG 1 cut(s) 465
SinI GGWCC 3 cut(s) 196, 310, 1178
SmiMI CAYNNNNRTG 2 cut(s) 603, 902
SmlI CTYRAG 2 cut(s) 173, 266
SmoI CTYRAG 2 cut(s) 173, 266
SpeI ACTAGT 1 cut(s) 46
Sse9I AATT 4 cut(s) 412, 508, 648, 1019
SsiI CCGC 4 cut(s) 326, 462, 464, 969
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 5 cut(s) 655, 1013, 1093, 1174, 1180
StyI CCWWGG 1 cut(s) 806
TaaI ACNGT 4 cut(s) 91, 868, 904, 998
TaiI ACGT 1 cut(s) 1204
TaqI TCGA 2 cut(s) 892, 1053
TasI AATT 4 cut(s) 412, 508, 648, 1019
TatI WGTACW 3 cut(s) 123, 670, 1109
TauI GCSGC 2 cut(s) 464, 467
Tru1I TTAA 2 cut(s) 507, 1043
Tru9I TTAA 2 cut(s) 507, 1043
TscAI CASTG 3 cut(s) 94, 610, 1216
TseFI GTSAC 6 cut(s) 418, 442, 535, 605, 694, 1159
TseI GCWGC 1 cut(s) 1071
Tsp45I GTSAC 6 cut(s) 418, 442, 535, 605, 694, 1159
TspDTI ATGAA 5 cut(s) 73, 446, 545, 913, 1226
TspRI CASTG 3 cut(s) 94, 610, 1216
Van91I CCANNNNNTGG 2 cut(s) 988, 1181
VneI GTGCAC 1 cut(s) 302
VpaK11BI GGWCC 3 cut(s) 196, 310, 1178
VspI ATTAAT 1 cut(s) 507
XagI CCTNNNNNAGG 1 cut(s) 1012
XapI RAATTY 1 cut(s) 1019
XmiI GTMKAC 1 cut(s) 993
XspI CTAG 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.