FvH4_1g03680

Lactoylglutathione lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017569
Physical Location & Seq
Forward (+)
1984824 .. 1986743
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03680.t2

Sequence Viewer

Length: 471 bp
ATGGCGGCATTAGCACAAGGAGTGATTGTGGATCACATTGCCAGACAATCCAAGGACATTAGGCGCCTCGCCGATTTCTACATTGAGACATTTGGATTCGAGGAGGTAGAGAGTCCAAAGGTCGGGCCACTCAAGGTGATATGGCTGGTTAAGCCCTCAGCTTTTACCATGCACCTTATTGAGTTCAACCCAAGTTACCCCCCAAACGAGAGTAATGACACGGCAGCGGTAGCTGAACCTGCCAAAATTCCCAGAGGCCACCATATCTGCTTCTCTGTCTCCAACTTCGAATCCTTTGTGCAGAAACTCAAGGAAAAGGTAATTGAGACGGCTCGTAGGCCAGTTGAATATAATCCAACTGGCAGTAAGAAAATCGACCAGGTCTTTTTCTTTGATCCCGATGGCAACGGTTTGGAGGTTTCGGATTCCACCGCAGCAAAGTGGGTTGCTCCAAATCGTAATGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase Glyoxalase_4

Protein Analysis

157

Amino Acids

17.43

Weight (kDa)

5.82

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017569)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03680 FvH4_1g03680
rosa_chinensis RchiOBHm_Chr4g0409411
rosa_laevigata RLG00000008020 RLG00000008563
rosa_multiflora Rmu_sc0001616.1_g000039
rosa_roxburghii Rroxscaffold_5G00353930
rosa_rugosa Rorug04G0093600 Rorug04G0093900
rosa_samantha Rh4BG155300 Rh4CG165400
rosa_wichuraiana Rw4G012780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 63
AciI CCGC 3 cut(s) 5, 227, 432
AclWI GGATC 2 cut(s) 39, 389
AcsI RAATTY 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 2 cut(s) 187, 347
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 2 cut(s) 161, 233
AluI AGCT 2 cut(s) 161, 233
Alw26I GTCTC 3 cut(s) 80, 283, 320
AlwI GGATC 2 cut(s) 39, 389
AoxI GGCC 3 cut(s) 125, 256, 338
ApeKI GCWGC 2 cut(s) 224, 434
ApoI RAATTY 1 cut(s) 246
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 148
AsuII TTCGAA 1 cut(s) 288
BanI GGYRCC 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 157
BbvI GCAGC 2 cut(s) 236, 446
BccI CCATC 1 cut(s) 395
BceAI ACGGC 2 cut(s) 237, 345
BciT130I CCWGG 1 cut(s) 380
BcoDI GTCTC 3 cut(s) 80, 283, 320
BfoI RGCGCY 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 3 cut(s) 6, 225, 435
BlsI GCNGC 3 cut(s) 7, 226, 436
Bme1390I CCNGG 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 380
Bpu10I CCTNAGC 1 cut(s) 157
Bpu14I TTCGAA 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 116, 293
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 341, 364
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 341, 364
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 236, 446
BsgI GTGCAG 1 cut(s) 320
BshFI GGCC 3 cut(s) 127, 258, 340
BshNI GGYRCC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 3 cut(s) 80, 283, 320
BsmBI CGTCTC 1 cut(s) 320
BsnI GGCC 3 cut(s) 127, 258, 340
Bsp119I TTCGAA 1 cut(s) 288
Bsp143I GATC 2 cut(s) 31, 394
BspACI CCGC 3 cut(s) 5, 227, 432
BspANI GGCC 3 cut(s) 127, 258, 340
BspCNI CTCAG 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 65
BspMI ACCTGC 1 cut(s) 247
BspPI GGATC 2 cut(s) 39, 389
BspT104I TTCGAA 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 36
BsrI ACTGG 2 cut(s) 341, 364
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 31, 394
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 34, 397
BstMAI GTCTC 3 cut(s) 80, 283, 320
BstMBI GATC 2 cut(s) 31, 394
BstMWI GCNNNNNNNGC 4 cut(s) 11, 151, 230, 239
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 236, 446
BsuRI GGCC 3 cut(s) 127, 258, 340
BveI ACCTGC 1 cut(s) 247
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 125
CsiI ACCWGGT 1 cut(s) 378
CviAII CATG 1 cut(s) 169
CviJI RGCY 8 cut(s) 127, 145, 154, 161, 233, 258, 332, 340
CviKI_1 RGCY 8 cut(s) 127, 145, 154, 161, 233, 258, 332, 340
DdeI CTNAG 1 cut(s) 157
DinI GGCGCC 1 cut(s) 65
DpnI GATC 2 cut(s) 33, 396
DpnII GATC 2 cut(s) 31, 394
Eco130I CCWWGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 51
EgeI GGCGCC 1 cut(s) 65
EheI GGCGCC 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 1 cut(s) 172
FaiI YATR 4 cut(s) 142, 170, 264, 351
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 6, 225, 435
Fsp4HI GCNGC 3 cut(s) 6, 225, 435
GlaI GCGC 1 cut(s) 65
GluI GCNGC 3 cut(s) 6, 225, 435
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 3 cut(s) 127, 258, 340
HhaI GCGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 4 cut(s) 96, 112, 290, 425
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 1 cut(s) 398
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 3 cut(s) 172, 301, 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 151, 230, 239
HpyF3I CTNAG 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 64
KasI GGCGCC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 31, 394
LmnI GCTCC 1 cut(s) 454
LpnPI CCDG 8 cut(s) 55, 131, 252, 265, 345, 354, 365, 392
Lsp1109I GCAGC 2 cut(s) 236, 446
MabI ACCWGGT 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 194
MalI GATC 2 cut(s) 33, 396
MboI GATC 2 cut(s) 31, 394
MluCI AATT 2 cut(s) 246, 321
Mly113I GGCGCC 1 cut(s) 64
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 2 cut(s) 306, 380
MnlI CCTC 6 cut(s) 77, 94, 97, 166, 248, 409
MseI TTAA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 4 cut(s) 11, 151, 230, 239
NarI GGCGCC 1 cut(s) 64
NdeII GATC 2 cut(s) 31, 394
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 65
NspV TTCGAA 1 cut(s) 288
PfeI GAWTC 3 cut(s) 96, 290, 425
PflFI GACNNNGTC 1 cut(s) 380
PkrI GCNGC 3 cut(s) 7, 226, 436
PleI GAGTC 1 cut(s) 120
PluTI GGCGCC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 125
PsyI GACNNNGTC 1 cut(s) 380
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 3 cut(s) 6, 225, 435
Sau3AI GATC 2 cut(s) 31, 394
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 380
SexAI ACCWGGT 1 cut(s) 378
SfoI GGCGCC 1 cut(s) 65
SfuI TTCGAA 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 131, 308
SmoI CTYRAG 2 cut(s) 131, 308
Sse9I AATT 2 cut(s) 246, 321
SsiI CCGC 3 cut(s) 5, 227, 432
SspDI GGCGCC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 3 cut(s) 99, 288, 375
TasI AATT 2 cut(s) 246, 321
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 96, 290, 425
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseI GCWGC 2 cut(s) 224, 434
Tth111I GACNNNGTC 1 cut(s) 380
XapI RAATTY 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.