RLG00000008020

Lactoylglutathione lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017569
Physical Location & Seq
Reverse (-)
24412801 .. 24415694
2894 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008020

Sequence Viewer

Length: 324 bp
ATGTGGCTGATTTTACCCTCCGCTTTTACTATGCACCTTATTGAGTACAACCCAACTGATCAGAGGAGCGGCACCTCACCGGTAGCCGACCCGGCCGATATTCCCAGAGGCCACCATAGTTGCTTCTCCGTCTCCAATTTCGAAACCTTTGTGCGAACACTCCAGGAAAAGGGAATTCAGACTGTTCATAGGCCGGTTCAATATAATCCAACTGGCAATAAGAAGATCGACCAGGTTTTTTTCTTTGATCCAGAAGGCAACGGTTTGGAGGTTTCCGACTCCACGGCTCCTCGGTGGAGTCCTCGAAATGGTAATGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase Glyoxalase_4

Protein Analysis

108

Amino Acids

12.02

Weight (kDa)

5.72

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017569)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03680 FvH4_1g03680
rosa_chinensis RchiOBHm_Chr4g0409411
rosa_laevigata RLG00000008020 RLG00000008563
rosa_multiflora Rmu_sc0001616.1_g000039
rosa_roxburghii Rroxscaffold_5G00353930
rosa_rugosa Rorug04G0093600 Rorug04G0093900
rosa_samantha Rh4BG155300 Rh4CG165400
rosa_wichuraiana Rw4G012780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccBSI CCGCTC 1 cut(s) 69
AciI CCGC 2 cut(s) 21, 69
AclWI GGATC 1 cut(s) 242
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 1 cut(s) 174
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 2 cut(s) 169, 308
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 1 cut(s) 200
AjnI CCWGG 2 cut(s) 162, 231
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 1 cut(s) 242
AoxI GGCC 3 cut(s) 93, 109, 191
ApoI RAATTY 1 cut(s) 174
AsiGI ACCGGT 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 69
AsuII TTCGAA 1 cut(s) 141
BanI GGYRCC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 2 cut(s) 164, 233
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 3 cut(s) 92, 164, 233
BmiI GGNNCC 2 cut(s) 73, 288
BmrFI CCNGG 3 cut(s) 92, 164, 233
BpmI CTGGAG 1 cut(s) 146
Bpu14I TTCGAA 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 282, 290
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 308
Bse118I RCCGGY 2 cut(s) 79, 193
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 2 cut(s) 164, 233
BseDI CCNNGG 2 cut(s) 282, 290
BseLI CCNNNNNNNGG 2 cut(s) 169, 308
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 79, 279
BseX3I CGGCCG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 3 cut(s) 95, 111, 193
BshNI GGYRCC 1 cut(s) 71
BshTI ACCGGT 1 cut(s) 79
BsiEI CGRYCG 1 cut(s) 96
BsiSI CCGG 3 cut(s) 80, 92, 194
BslI CCNNNNNNNGG 2 cut(s) 169, 308
BsmAI GTCTC 1 cut(s) 136
BsmBI CGTCTC 1 cut(s) 136
BsnI GGCC 3 cut(s) 95, 111, 193
Bsp119I TTCGAA 1 cut(s) 141
Bsp143I GATC 3 cut(s) 58, 225, 247
BspACI CCGC 2 cut(s) 21, 69
BspANI GGCC 3 cut(s) 95, 111, 193
BspLI GGNNCC 2 cut(s) 73, 288
BspPI GGATC 1 cut(s) 242
BspT104I TTCGAA 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 69
BsrFI RCCGGY 2 cut(s) 79, 193
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 2 cut(s) 79, 193
BssECI CCNNGG 2 cut(s) 282, 290
BssMI GATC 3 cut(s) 58, 225, 247
Bst2UI CCWGG 2 cut(s) 164, 233
Bst4CI ACNGT 2 cut(s) 184, 263
BstBI TTCGAA 1 cut(s) 141
BstDSI CCRYGG 1 cut(s) 282
BstKTI GATC 3 cut(s) 61, 228, 250
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 3 cut(s) 58, 225, 247
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 2 cut(s) 164, 233
BstSCI CCNGG 3 cut(s) 90, 162, 231
BstZI CGGCCG 1 cut(s) 93
BsuRI GGCC 3 cut(s) 95, 111, 193
BtgI CCRYGG 1 cut(s) 282
Cfr10I RCCGGY 2 cut(s) 79, 193
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 1 cut(s) 46
CspAI ACCGGT 1 cut(s) 79
CspCI CAANNNNNGTGG 2 cut(s) 101, 136
CviJI RGCY 6 cut(s) 7, 86, 95, 111, 193, 287
CviKI_1 RGCY 6 cut(s) 7, 86, 95, 111, 193, 287
CviQI GTAC 1 cut(s) 46
DpnI GATC 3 cut(s) 60, 227, 249
DpnII GATC 3 cut(s) 58, 225, 247
EaeI YGGCCR 1 cut(s) 93
EagI CGGCCG 1 cut(s) 93
EclXI CGGCCG 1 cut(s) 93
Eco52I CGGCCG 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 174
EcoRII CCWGG 2 cut(s) 162, 231
Esp3I CGTCTC 1 cut(s) 136
FaiI YATR 4 cut(s) 32, 117, 189, 204
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 3 cut(s) 95, 111, 193
HapII CCGG 3 cut(s) 80, 92, 194
HinfI GANTC 2 cut(s) 278, 298
HpaII CCGG 3 cut(s) 80, 92, 194
HphI GGTGA 1 cut(s) 69
Hpy188I TCNGA 3 cut(s) 63, 180, 277
Hpy188III TCNNGA 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 2 cut(s) 184, 263
HpyCH4V TGCA 2 cut(s) 34, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 3 cut(s) 58, 225, 247
LmnI GCTCC 2 cut(s) 66, 292
MabI ACCWGGT 1 cut(s) 231
MalI GATC 3 cut(s) 60, 227, 249
MbiI CCGCTC 1 cut(s) 69
MboI GATC 3 cut(s) 58, 225, 247
MboII GAAGA 1 cut(s) 235
MluCI AATT 2 cut(s) 136, 174
MlyI GAGTC 2 cut(s) 272, 307
MmeI TCCRAC 2 cut(s) 233, 300
MnlI CCTC 7 cut(s) 28, 57, 85, 101, 262, 300, 312
MspI CCGG 3 cut(s) 80, 92, 194
MspR9I CCNGG 3 cut(s) 92, 164, 233
MvaI CCWGG 2 cut(s) 164, 233
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 92
NdeII GATC 3 cut(s) 58, 225, 247
NlaIV GGNNCC 2 cut(s) 73, 288
NspV TTCGAA 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 162
PinAI ACCGGT 1 cut(s) 79
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 2 cut(s) 272, 306
PpsI GAGTC 2 cut(s) 272, 306
Psp6I CCWGG 2 cut(s) 162, 231
PspGI CCWGG 2 cut(s) 162, 231
PspN4I GGNNCC 2 cut(s) 73, 288
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 3 cut(s) 58, 225, 247
SchI GAGTC 2 cut(s) 272, 307
ScrFI CCNGG 3 cut(s) 92, 164, 233
SetI ASST 5 cut(s) 39, 77, 149, 237, 273
SexAI ACCWGGT 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 141
Sse9I AATT 2 cut(s) 136, 174
SsiI CCGC 2 cut(s) 21, 69
StyD4I CCNGG 3 cut(s) 90, 162, 231
TaaI ACNGT 2 cut(s) 184, 263
TaqI TCGA 3 cut(s) 141, 228, 304
TasI AATT 2 cut(s) 136, 174
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 176
TspGWI ACGGA 1 cut(s) 118
XapI RAATTY 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.