Rmu_sc0001616.1_g000039

Lactoylglutathione lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001616.1
OG0017569
Physical Location & Seq
Reverse (-)
193530 .. 193964
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001616.1_g000039.1.cds

Sequence Viewer

Length: 243 bp
atggcagcaatggtagcacgagtaactctggatcacattgccagacaatccaacgacattaggcgcctcgccgatttctacatagagacatttggattcgaggaggtagagagcccaaagatcgggccactcaagaggaacgacacaacaccgggagccgacccagcccgtattcccagaggccaccatatgtgcttctctgtctccaatttcgaaacctttgtgcaaacactcaaggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyoxalase Glyoxalase_4

Protein Analysis

80

Amino Acids

9.05

Weight (kDa)

6.82

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017569)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03680 FvH4_1g03680
rosa_chinensis RchiOBHm_Chr4g0409411
rosa_laevigata RLG00000008020 RLG00000008563
rosa_multiflora Rmu_sc0001616.1_g000039
rosa_roxburghii Rroxscaffold_5G00353930
rosa_rugosa Rorug04G0093600 Rorug04G0093900
rosa_samantha Rh4BG155300 Rh4CG165400
rosa_wichuraiana Rw4G012780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AclWI GGATC 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 122
Alw26I GTCTC 2 cut(s) 80, 208
AlwI GGATC 1 cut(s) 39
AoxI GGCC 2 cut(s) 125, 181
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 153
AsuII TTCGAA 1 cut(s) 213
BanI GGYRCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 116
BauI CACGAG 1 cut(s) 18
BbvI GCAGC 1 cut(s) 17
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 80, 208
BfoI RGCGCY 1 cut(s) 67
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 65, 157
BmrFI CCNGG 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 213
BpuEI CTTGAG 2 cut(s) 116, 218
BpuMI CCSGG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse3DI GCAATG 2 cut(s) 15, 36
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 2 cut(s) 15, 36
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 163
BshFI GGCC 2 cut(s) 127, 183
BshNI GGYRCC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 80, 208
BsnI GGCC 2 cut(s) 127, 183
Bsp119I TTCGAA 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 31, 120
BspANI GGCC 2 cut(s) 127, 183
BspLI GGNNCC 2 cut(s) 65, 157
BspPI GGATC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 63
BsrDI GCAATG 2 cut(s) 15, 36
BssMI GATC 2 cut(s) 31, 120
BssNI GRCGYC 1 cut(s) 64
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
BstACI GRCGYC 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 2 cut(s) 34, 123
BstMAI GTCTC 2 cut(s) 80, 208
BstMBI GATC 2 cut(s) 31, 120
BstMWI GCNNNNNNNGC 2 cut(s) 14, 164
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 2 cut(s) 127, 183
CfoI GCGC 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 125
CviJI RGCY 5 cut(s) 114, 127, 158, 167, 183
CviKI_1 RGCY 5 cut(s) 114, 127, 158, 167, 183
DinI GGCGCC 1 cut(s) 65
DpnI GATC 2 cut(s) 33, 122
DpnII GATC 2 cut(s) 31, 120
Eco24I GRGCYC 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 116
EgeI GGCGCC 1 cut(s) 65
EheI GGCGCC 1 cut(s) 65
FaiI YATR 4 cut(s) 83, 189, 191, 241
FauNDI CATATG 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 167
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 2 cut(s) 127, 183
HapII CCGG 1 cut(s) 152
HhaI GCGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 64
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 1 cut(s) 96
HpaII CCGG 1 cut(s) 152
Hpy188III TCNNGA 2 cut(s) 29, 133
HpyCH4V TGCA 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 164
Hsp92I GRCGYC 1 cut(s) 64
HspAI GCGC 1 cut(s) 64
KasI GGCGCC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 31, 120
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 5 cut(s) 14, 55, 165, 177, 190
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 22
MalI GATC 2 cut(s) 33, 122
MboI GATC 2 cut(s) 31, 120
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 1 cut(s) 208
Mly113I GGCGCC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 5 cut(s) 77, 94, 97, 129, 173
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 14, 164
NarI GGCGCC 1 cut(s) 64
NciI CCSGG 1 cut(s) 153
NdeI CATATG 1 cut(s) 189
NdeII GATC 2 cut(s) 31, 120
NlaIV GGNNCC 2 cut(s) 65, 157
NspV TTCGAA 1 cut(s) 213
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 1 cut(s) 7
PluTI GGCGCC 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 65, 157
PspPI GGNCC 1 cut(s) 125
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 31, 120
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 116
SetI ASST 3 cut(s) 108, 221, 240
SfoI GGCGCC 1 cut(s) 65
SfuI TTCGAA 1 cut(s) 213
SmlI CTYRAG 2 cut(s) 131, 233
SmoI CTYRAG 2 cut(s) 131, 233
Sse9I AATT 1 cut(s) 208
SspDI GGCGCC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 151
TaqI TCGA 2 cut(s) 99, 213
TasI AATT 1 cut(s) 208
TfiI GAWTC 1 cut(s) 96
TseI GCWGC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.