FvH4_1g04361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017045
Physical Location & Seq
Forward (+)
2339051 .. 2340007
957 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04361.t1

Sequence Viewer

Length: 288 bp
ATGGCCTACTCCAAAGCCGTCTCTAGGTTATCCTCCAGATTACAGCCCTCCTTTACCCTCAACAACCTCACAAAAACGACGTCGTCACTCAAATCGAGCCTTCACTTTCCGGCACCCGCTCCCGTCCGACGCACCGTTCGCATTTCCAGGTTACCATTGGAATTGAGCTGCGTGGAGTCGATGATGCCGCTGCACAGTGCAATCGCTTCGGCTCGGTTAATATCTAGCTTGCCGATTCAGTCTCAGTGCTGGGGATTAGTTCCTCAAGGAATTTCAATGCCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.35

Weight (kDa)

11.31

Isoelectric Point (pI)

77.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55205 AT1G55205 AT3G13674
fragaria_vesca FvH4_1g04361
malus_domestica MD02G1043400.v1.1 MD15G1182000.v1.1
prunus_persica Prupe.7G233600_v2.0.a1
pyrus_communis pycom02g03610 pycom15g16430
rosa_chinensis RchiOBHm_Chr2g0090011
rosa_samantha Rh2BG048600 Rh2CG050800
rosa_wichuraiana Rw2G004060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 112
AccBSI CCGCTC 1 cut(s) 119
AciI CCGC 2 cut(s) 117, 188
AcsI RAATTY 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 1 cut(s) 276
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 2 cut(s) 168, 228
AluI AGCT 2 cut(s) 168, 228
Alw26I GTCTC 2 cut(s) 25, 246
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 168, 190
ApoI RAATTY 1 cut(s) 270
ArsI GACNNNNNNTTYG 4 cut(s) 65, 97, 120, 152
BanI GGYRCC 1 cut(s) 112
BbvI GCAGC 2 cut(s) 155, 177
BceAI ACGGC 1 cut(s) 2
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciT130I CCWGG 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 25, 246
BfaI CTAG 2 cut(s) 24, 225
BisI GCNGC 3 cut(s) 169, 188, 191
BlsI GCNGC 3 cut(s) 170, 189, 192
Bme1390I CCNGG 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 155, 177
BseYI CCCAGC 1 cut(s) 249
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 2 cut(s) 25, 246
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 1 cut(s) 5
BspACI CCGC 2 cut(s) 117, 188
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 119
BssNI GRCGYC 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 2 cut(s) 136, 197
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 25, 246
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 148
BstPI GGTNACC 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 155, 177
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 202, 251
Cac8I GCNNGC 1 cut(s) 230
CseI GACGC 1 cut(s) 138
CviJI RGCY 7 cut(s) 5, 17, 46, 99, 168, 212, 228
CviKI_1 RGCY 7 cut(s) 5, 17, 46, 99, 168, 212, 228
DdeI CTNAG 1 cut(s) 243
Eco91I GGTNACC 1 cut(s) 150
EcoO65I GGTNACC 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 25
FaiI YATR 1 cut(s) 286
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 169, 188, 191
Fsp4HI GCNGC 3 cut(s) 169, 188, 191
FspBI CTAG 2 cut(s) 24, 225
GluI GCNGC 3 cut(s) 169, 188, 191
GsaI CCCAGC 1 cut(s) 253
GsuI CTGGAG 1 cut(s) 19
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 110
HgaI GACGC 1 cut(s) 138
Hin1I GRCGYC 1 cut(s) 80
HinfI GANTC 2 cut(s) 176, 235
HpaII CCGG 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 36
Hpy99I CGWCG 3 cut(s) 82, 85, 132
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 2 cut(s) 136, 197
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 193, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 49, 123, 133, 160, 235
Lsp1109I GCAGC 2 cut(s) 155, 177
LweI GCATC 1 cut(s) 174
MaeI CTAG 2 cut(s) 24, 225
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 84, 150
MbiI CCGCTC 1 cut(s) 119
MluCI AATT 2 cut(s) 161, 270
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 5 cut(s) 43, 58, 68, 77, 273
MseI TTAA 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 138
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 235
PflFI GACNNNGTC 1 cut(s) 82
PkrI GCNGC 3 cut(s) 170, 189, 192
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 146
PspEI GGTNACC 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 249
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 114
PsyI GACNNNGTC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 3 cut(s) 169, 188, 191
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 148
SetI ASST 6 cut(s) 29, 69, 83, 152, 170, 230
SfaNI GCATC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 2 cut(s) 161, 270
SsiI CCGC 2 cut(s) 117, 188
SspMI CTAG 2 cut(s) 24, 225
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 2 cut(s) 136, 197
TaiI ACGT 1 cut(s) 83
TaqI TCGA 2 cut(s) 95, 179
TasI AATT 2 cut(s) 161, 270
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 2 cut(s) 202, 251
TseFI GTSAC 1 cut(s) 84
TseI GCWGC 2 cut(s) 168, 190
Tsp45I GTSAC 1 cut(s) 84
TspRI CASTG 2 cut(s) 202, 251
Tth111I GACNNNGTC 1 cut(s) 82
XapI RAATTY 1 cut(s) 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 2 cut(s) 24, 225
ZraI GACGTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.