pycom15g16430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017045
Physical Location & Seq
Forward (+)
11522066 .. 11523324
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g16430.3

Sequence Viewer

Length: 465 bp
ATGGCGTCCTGGAAAGGTATCTCTAGGTTGTCCTCCCGATTACAGCCCTTCGCGCGCAATCTGACCAAGACGTTGCCGGCATCCGAGCTCTCTCAGCTCAAATCGAGCTTTCTCTCTCCGGCCTCCGCTCCCATGCGACGCATTTCTGGCCTTTCCAGGTTACCAGTGGAGTTGGGATCAATGATGCCGTTGCACAGCGCGGTGGCTTCGGCGCGGTTGATATCGAGCTTGTCGATTGACTCCCAGAGCTGGGGATTAGTTCCTCAAGGGTGCTCCGTATTTATAAAGAAAAAGAAAAACAGACAAATCATTTTTAAGCCTGGAACTGGCATGCCACTCTCTTTGTTCTTAAAACTGGACGTGCGCATATATTCACACCTGCACACACTACCAAGTTGTAACAATGAATTCTTGCTAATCATCTTTATGTATAACTATATCAATCAAACGATATACAACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.2

Weight (kDa)

10.49

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55205 AT1G55205 AT3G13674
fragaria_vesca FvH4_1g04361
malus_domestica MD02G1043400.v1.1 MD15G1182000.v1.1
prunus_persica Prupe.7G233600_v2.0.a1
pyrus_communis pycom02g03610 pycom15g16430
rosa_chinensis RchiOBHm_Chr2g0090011
rosa_samantha Rh2BG048600 Rh2CG050800
rosa_wichuraiana Rw2G004060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AarI CACCTGC 1 cut(s) 387
Acc16I TGCGCA 1 cut(s) 365
Acc36I ACCTGC 1 cut(s) 387
AccBSI CCGCTC 1 cut(s) 128
AccII CGCG 4 cut(s) 53, 55, 200, 214
AciI CCGC 3 cut(s) 126, 200, 214
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 249, 250, 326
AjiI CACGTC 1 cut(s) 361
AjnI CCWGG 3 cut(s) 8, 155, 319
AluBI AGCT 5 cut(s) 88, 97, 108, 228, 249
AluI AGCT 5 cut(s) 88, 97, 108, 228, 249
Alw21I GWGCWC 2 cut(s) 90, 275
AlwI GGATC 1 cut(s) 184
AoxI GGCC 2 cut(s) 120, 148
ApoI RAATTY 1 cut(s) 407
AspLEI GCGC 5 cut(s) 55, 57, 200, 214, 366
BanII GRGCYC 1 cut(s) 90
Bbv12I GWGCWC 2 cut(s) 90, 275
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 3 cut(s) 10, 157, 321
BfaI CTAG 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 387
Bme1390I CCNGG 3 cut(s) 10, 157, 321
BmgBI CACGTC 1 cut(s) 361
BmrFI CCNGG 3 cut(s) 10, 157, 321
BmsI GCATC 2 cut(s) 89, 174
BpuEI CTTGAG 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 250, 326
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 3 cut(s) 164, 331, 360
BseBI CCWGG 3 cut(s) 10, 157, 321
BseGI GGATG 1 cut(s) 80
BseLI CCNNNNNNNGG 3 cut(s) 249, 250, 326
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 3 cut(s) 164, 331, 360
BsePI GCGCGC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 249
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 4 cut(s) 53, 55, 200, 214
BshFI GGCC 2 cut(s) 122, 150
BsiHKAI GWGCWC 2 cut(s) 90, 275
BsiSI CCGG 2 cut(s) 77, 119
BslI CCNNNNNNNGG 3 cut(s) 249, 250, 326
BsnI GGCC 2 cut(s) 122, 150
Bsp1286I GDGCHC 2 cut(s) 90, 275
Bsp143I GATC 1 cut(s) 176
BspACI CCGC 3 cut(s) 126, 200, 214
BspANI GGCC 2 cut(s) 122, 150
BspCNI CTCAG 1 cut(s) 106
BspFNI CGCG 4 cut(s) 53, 55, 200, 214
BspMI ACCTGC 1 cut(s) 387
BspPI GGATC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 3 cut(s) 164, 331, 360
BssAI RCCGGY 1 cut(s) 76
BssHII GCGCGC 1 cut(s) 53
BssMI GATC 1 cut(s) 176
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 3 cut(s) 10, 157, 321
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 55, 78, 332
BstDEI CTNAG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 159
BstF5I GGATG 1 cut(s) 80
BstFNI CGCG 4 cut(s) 53, 55, 200, 214
BstHHI GCGC 5 cut(s) 55, 57, 200, 214, 366
BstKTI GATC 1 cut(s) 179
BstMBI GATC 1 cut(s) 176
BstMWI GCNNNNNNNGC 3 cut(s) 52, 94, 147
BstNI CCWGG 3 cut(s) 10, 157, 321
BstNSI RCATGY 1 cut(s) 334
BstPI GGTNACC 1 cut(s) 159
BstSCI CCNGG 3 cut(s) 8, 155, 319
BstUI CGCG 4 cut(s) 53, 55, 200, 214
BsuRI GGCC 2 cut(s) 122, 150
BtrI CACGTC 1 cut(s) 361
BtsCI GGATG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 387
Cac8I GCNNGC 3 cut(s) 55, 78, 332
CfoI GCGC 5 cut(s) 55, 57, 200, 214, 366
Cfr10I RCCGGY 1 cut(s) 76
CseI GACGC 1 cut(s) 147
CspCI CAANNNNNGTGG 2 cut(s) 324, 359
CviAII CATG 2 cut(s) 133, 331
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 90
Eco32I GATATC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 88
Eco91I GGTNACC 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 3 cut(s) 8, 155, 319
EcoRV GATATC 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 2 cut(s) 136, 334
FaiI YATR 9 cut(s) 134, 284, 332, 368, 370, 428, 432, 438, 454
FatI CATG 2 cut(s) 132, 330
FokI GGATG 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 90
FspAI RTGCGCAY 1 cut(s) 365
FspBI CTAG 1 cut(s) 24
FspI TGCGCA 1 cut(s) 365
GlaI GCGC 5 cut(s) 54, 56, 199, 213, 365
GsaI CCCAGC 1 cut(s) 253
HaeIII GGCC 2 cut(s) 122, 150
HapII CCGG 2 cut(s) 77, 119
HgaI GACGC 1 cut(s) 147
HhaI GCGC 5 cut(s) 55, 57, 200, 214, 366
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 136, 334
Hin6I GCGC 5 cut(s) 53, 55, 198, 212, 364
HinP1I GCGC 5 cut(s) 53, 55, 198, 212, 364
HinfI GANTC 1 cut(s) 239
HpaII CCGG 2 cut(s) 77, 119
Hpy188I TCNGA 2 cut(s) 63, 85
Hpy188III TCNNGA 1 cut(s) 36
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 71, 360
HpyCH4V TGCA 2 cut(s) 193, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 94, 147
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 2 cut(s) 71, 360
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 136, 334
HspAI GCGC 5 cut(s) 53, 55, 198, 212, 364
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 176
LmnI GCTCC 2 cut(s) 133, 278
LweI GCATC 2 cut(s) 89, 174
MaeI CTAG 1 cut(s) 24
MaeII ACGT 2 cut(s) 71, 360
MaeIII GTNAC 2 cut(s) 159, 398
MalI GATC 1 cut(s) 178
MbiI CCGCTC 1 cut(s) 128
MboI GATC 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 90, 275
MluCI AATT 1 cut(s) 407
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 3 cut(s) 43, 133, 273
MroNI GCCGGC 1 cut(s) 76
MseI TTAA 3 cut(s) 315, 350, 463
MslI CAYNNNNRTG 1 cut(s) 425
MspI CCGG 2 cut(s) 77, 119
MspR9I CCNGG 3 cut(s) 10, 157, 321
MvaI CCWGG 3 cut(s) 10, 157, 321
MvnI CGCG 4 cut(s) 53, 55, 200, 214
MwoI GCNNNNNNNGC 3 cut(s) 52, 94, 147
NaeI GCCGGC 1 cut(s) 78
NdeII GATC 1 cut(s) 176
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 2 cut(s) 136, 334
NsbI TGCGCA 1 cut(s) 365
NspI RCATGY 1 cut(s) 334
PaeI GCATGC 1 cut(s) 334
PaqCI CACCTGC 1 cut(s) 387
PauI GCGCGC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PdiI GCCGGC 1 cut(s) 78
PfoI TCCNGGA 1 cut(s) 8
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PsiI TTATAA 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 3 cut(s) 8, 155, 319
PspEI GGTNACC 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 249
PspGI CCWGG 3 cut(s) 8, 155, 319
PteI GCGCGC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 425
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 3 cut(s) 315, 350, 463
Sau3AI GATC 1 cut(s) 176
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 3 cut(s) 10, 157, 321
SduI GDGCHC 2 cut(s) 90, 275
SfaNI GCATC 2 cut(s) 89, 174
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
SphI GCATGC 1 cut(s) 334
Sse9I AATT 1 cut(s) 407
SsiI CCGC 3 cut(s) 126, 200, 214
SspMI CTAG 1 cut(s) 24
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 8, 155, 319
TaiI ACGT 2 cut(s) 74, 363
TaqI TCGA 3 cut(s) 104, 224, 233
TasI AATT 1 cut(s) 407
Tru1I TTAA 3 cut(s) 315, 350, 463
Tru9I TTAA 3 cut(s) 315, 350, 463
TscAI CASTG 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 420
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 1 cut(s) 171
XapI RAATTY 1 cut(s) 407
XceI RCATGY 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.