pycom02g03610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0017045
Physical Location & Seq
Forward (+)
2414394 .. 2415789
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g03610.3

Sequence Viewer

Length: 288 bp
ATGGCGTCCTGCAAAGTTATCTCTAGGTTATCCTCCCGATTACAACCCTTCACGCGCAATCTCACCAAGAAGTCGCCGGCATCCGATCTCTCTCAGCTCAAGTCGAGCCTTCTCTCTCCGGCCTCCGCTCCCGTCCGACGCATTTCTGGTCTTTCCAGGTTACCAGTGGAGTTGGGATCGATGATGCCGTTGCACAGCGCGGTGGCTTCGGCGCGGTTGATATCGAGTTTGTCGATTGACTCTCAGAACTGGGGATTAGTTCCTCAAGGGATTTCAATGCCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.11

Weight (kDa)

11.63

Isoelectric Point (pI)

77.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55205 AT1G55205 AT3G13674
fragaria_vesca FvH4_1g04361
malus_domestica MD02G1043400.v1.1 MD15G1182000.v1.1
prunus_persica Prupe.7G233600_v2.0.a1
pyrus_communis pycom02g03610 pycom15g16430
rosa_chinensis RchiOBHm_Chr2g0090011
rosa_samantha Rh2BG048600 Rh2CG050800
rosa_wichuraiana Rw2G004060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 128
AccII CGCG 3 cut(s) 55, 200, 214
AciI CCGC 3 cut(s) 126, 200, 214
AclWI GGATC 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 276
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
AlwI GGATC 1 cut(s) 184
AoxI GGCC 1 cut(s) 120
AspLEI GCGC 3 cut(s) 57, 200, 214
AsuHPI GGTGA 1 cut(s) 55
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 157
BfaI CTAG 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 2 cut(s) 89, 174
BmuI ACTGGG 1 cut(s) 259
BpuEI CTTGAG 2 cut(s) 83, 249
Bsa29I ATCGAT 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 5
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 2 cut(s) 164, 254
BseBI CCWGG 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 179
BseGI GGATG 1 cut(s) 80
BseMII CTCAG 2 cut(s) 107, 257
BseNI ACTGG 2 cut(s) 164, 254
Bsh1236I CGCG 3 cut(s) 55, 200, 214
BshFI GGCC 1 cut(s) 122
BshVI ATCGAT 1 cut(s) 179
BsiSI CCGG 2 cut(s) 77, 119
BsnI GGCC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 85, 176
BspACI CCGC 3 cut(s) 126, 200, 214
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 2 cut(s) 106, 256
BspDI ATCGAT 1 cut(s) 179
BspFNI CGCG 3 cut(s) 55, 200, 214
BspPI GGATC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 2 cut(s) 164, 254
BssAI RCCGGY 1 cut(s) 76
BssMI GATC 2 cut(s) 85, 176
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 93, 243
BstEII GGTNACC 1 cut(s) 159
BstF5I GGATG 1 cut(s) 80
BstFNI CGCG 3 cut(s) 55, 200, 214
BstHHI GCGC 3 cut(s) 57, 200, 214
BstKTI GATC 2 cut(s) 88, 179
BstMBI GATC 2 cut(s) 85, 176
BstNI CCWGG 1 cut(s) 157
BstPI GGTNACC 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 155
BstUI CGCG 3 cut(s) 55, 200, 214
Bsu15I ATCGAT 1 cut(s) 179
BsuRI GGCC 1 cut(s) 122
BsuTUI ATCGAT 1 cut(s) 179
BtsCI GGATG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 3 cut(s) 57, 200, 214
Cfr10I RCCGGY 1 cut(s) 76
ClaI ATCGAT 1 cut(s) 179
CseI GACGC 1 cut(s) 147
CviJI RGCY 4 cut(s) 97, 108, 122, 206
CviKI_1 RGCY 4 cut(s) 97, 108, 122, 206
DdeI CTNAG 2 cut(s) 93, 243
DpnI GATC 2 cut(s) 87, 178
DpnII GATC 2 cut(s) 85, 176
Eco32I GATATC 1 cut(s) 222
Eco91I GGTNACC 1 cut(s) 159
EcoO65I GGTNACC 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 155
EcoRV GATATC 1 cut(s) 222
FaiI YATR 1 cut(s) 286
FokI GGATG 1 cut(s) 67
FspBI CTAG 1 cut(s) 24
GlaI GCGC 3 cut(s) 56, 199, 213
HaeIII GGCC 1 cut(s) 122
HapII CCGG 2 cut(s) 77, 119
HgaI GACGC 1 cut(s) 147
HhaI GCGC 3 cut(s) 57, 200, 214
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 3 cut(s) 55, 198, 212
HinP1I GCGC 3 cut(s) 55, 198, 212
HinfI GANTC 1 cut(s) 239
HpaII CCGG 2 cut(s) 77, 119
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 85, 137, 246
Hpy188III TCNNGA 1 cut(s) 36
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 58, 119
HpyCH4V TGCA 2 cut(s) 12, 193
HpyF3I CTNAG 2 cut(s) 93, 243
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 3 cut(s) 55, 198, 212
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 85, 176
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 8 cut(s) 22, 90, 132, 132, 142, 169, 177, 235
LweI GCATC 2 cut(s) 89, 174
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 159
MalI GATC 2 cut(s) 87, 178
MbiI CCGCTC 1 cut(s) 128
MboI GATC 2 cut(s) 85, 176
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 3 cut(s) 43, 133, 273
MroNI GCCGGC 1 cut(s) 76
MspI CCGG 2 cut(s) 77, 119
MspR9I CCNGG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 3 cut(s) 55, 200, 214
NaeI GCCGGC 1 cut(s) 78
NdeII GATC 2 cut(s) 85, 176
NgoMIV GCCGGC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 2 cut(s) 185, 230
PdiI GCCGGC 1 cut(s) 78
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 155
PspEI GGTNACC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 155
Sau3AI GATC 2 cut(s) 85, 176
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 157
SetI ASST 3 cut(s) 29, 99, 161
SfaNI GCATC 2 cut(s) 89, 174
SmlI CTYRAG 2 cut(s) 98, 264
SmoI CTYRAG 2 cut(s) 98, 264
SsiI CCGC 3 cut(s) 126, 200, 214
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 155
TaqI TCGA 4 cut(s) 104, 179, 224, 233
TscAI CASTG 1 cut(s) 171
TspRI CASTG 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.