Rh2BG048600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017045
Physical Location & Seq
Forward (+)
3445748 .. 3446951
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG048600.1

Sequence Viewer

Length: 291 bp
ATGGCCGCCTACTCTAAAGTCGTCTCTAGGTTATCCTCCCGATTACACCCCTCCTTCACTCACAAGCTCACCAAAACGACGTCGTCCGAACTCTCTTCCCTCAAATCGAGCCTTCACTTTCCGGCACCCGCTCCCGTCCGACGCATTTCCAGGTTACCATTGGAACTGAGCAGCGTGGAGTCGATGATGCCATTGCACAGTGCAATTGCTTCGGCGCGGTTAACATCGAGCTTGTCAATTGAGTCCCAGAGCTGGGGATTAGTTCCTCAAGGAATTTCAATGCCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.39

Weight (kDa)

10.96

Isoelectric Point (pI)

77.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55205 AT1G55205 AT3G13674
fragaria_vesca FvH4_1g04361
malus_domestica MD02G1043400.v1.1 MD15G1182000.v1.1
prunus_persica Prupe.7G233600_v2.0.a1
pyrus_communis pycom02g03610 pycom15g16430
rosa_chinensis RchiOBHm_Chr2g0090011
rosa_samantha Rh2BG048600 Rh2CG050800
rosa_wichuraiana Rw2G004060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 131
AccII CGCG 1 cut(s) 217
AciI CCGC 3 cut(s) 6, 129, 217
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 252, 253
AgsI TTSAA 1 cut(s) 279
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 3 cut(s) 67, 231, 252
AluI AGCT 3 cut(s) 67, 231, 252
Alw26I GTCTC 1 cut(s) 28
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 273
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 61
BanI GGYRCC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BciT130I CCWGG 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 27
BisI GCNGC 2 cut(s) 6, 172
BlsI GCNGC 2 cut(s) 7, 173
Bme1390I CCNGG 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 253
Bse3DI GCAATG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 252, 253
BseMI GCAATG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 122
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 252, 253
BsmAI GTCTC 1 cut(s) 28
BsmBI CGTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 5
BspACI CCGC 3 cut(s) 6, 129, 217
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 159
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 124
BsrBI CCGCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 191
BssNI GRCGYC 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 100
BstACI GRCGYC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 167
BstEII GGTNACC 1 cut(s) 153
BstFNI CGCG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 151
BstPI GGTNACC 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 149
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 205
CfoI GCGC 1 cut(s) 217
CseI GACGC 1 cut(s) 150
CviJI RGCY 5 cut(s) 5, 67, 111, 231, 252
CviKI_1 RGCY 5 cut(s) 5, 67, 111, 231, 252
DdeI CTNAG 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Eco91I GGTNACC 1 cut(s) 153
EcoO65I GGTNACC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 28
FaiI YATR 1 cut(s) 289
FaqI GGGAC 1 cut(s) 229
FauI CCCGC 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 6, 172
Fsp4HI GCNGC 2 cut(s) 6, 172
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 6, 172
GsaI CCCAGC 1 cut(s) 256
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 122
HgaI GACGC 1 cut(s) 150
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 80
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 2 cut(s) 179, 242
HpaI GTTAAC 1 cut(s) 222
HpaII CCGG 1 cut(s) 122
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 2 cut(s) 88, 140
Hpy188III TCNNGA 1 cut(s) 39
Hpy8I GTNNAC 1 cut(s) 222
Hpy99I CGWCG 3 cut(s) 82, 85, 144
HpyAV CCTTC 2 cut(s) 64, 122
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 196, 203
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 80
HspAI GCGC 1 cut(s) 215
KspAI GTTAAC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 5 cut(s) 135, 136, 163, 238, 260
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 177
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 153
MbiI CCGCTC 1 cut(s) 131
MboII GAAGA 1 cut(s) 87
MfeI CAATTG 2 cut(s) 204, 237
MluCI AATT 3 cut(s) 204, 237, 273
MlyI GAGTC 2 cut(s) 188, 251
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 4 cut(s) 46, 61, 110, 276
MseI TTAA 1 cut(s) 221
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 151
MunI CAATTG 2 cut(s) 204, 237
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 126
PflFI GACNNNGTC 1 cut(s) 82
PkrI GCNGC 2 cut(s) 7, 173
PleI GAGTC 2 cut(s) 187, 250
PpsI GAGTC 2 cut(s) 187, 250
Psp6I CCWGG 1 cut(s) 149
PspEI GGTNACC 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 252
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 126
PsyI GACNNNGTC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 2 cut(s) 6, 172
SchI GAGTC 2 cut(s) 188, 251
ScrFI CCNGG 1 cut(s) 151
SetI ASST 6 cut(s) 32, 69, 83, 155, 233, 254
SfaNI GCATC 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 3 cut(s) 204, 237, 273
SsiI CCGC 3 cut(s) 6, 129, 217
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 83
TaqI TCGA 3 cut(s) 107, 182, 227
TasI AATT 3 cut(s) 204, 237, 273
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 205
TseI GCWGC 1 cut(s) 171
TspRI CASTG 1 cut(s) 205
Tth111I GACNNNGTC 1 cut(s) 82
XapI RAATTY 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XspI CTAG 1 cut(s) 27
ZraI GACGTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.