MD02G1043400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0017045
Physical Location & Seq
Forward (+)
3554312 .. 3556452
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1043400.v1.1.491

Sequence Viewer

Length: 288 bp
ATGGCGTCCTGCAAAGTTATCTCTAGGTTATCCTCCCGATTACAGCCCTTCACGCGCAATCTCACCAATAAGTCGCCGGCATCCGAGCTCTCTCAGCTCAAGTCGAGCCTTCTCTCTGCTGCCTCCGCTCCTGTCCGACGCATTTCTGGTCTTTCCAGGTTACCAGTGGAGTTGGGATCAATGATGCCGTTGCACAGCGCGGTGGCTTCGGCGCGGTTGATATCGAGCTTGTCGATTGACTCTCAGAACTGGGGATTAGTTCCTCATGGGATTTCAATGCCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.1

Weight (kDa)

11.62

Isoelectric Point (pI)

70.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55205 AT1G55205 AT3G13674
fragaria_vesca FvH4_1g04361
malus_domestica MD02G1043400.v1.1 MD15G1182000.v1.1
prunus_persica Prupe.7G233600_v2.0.a1
pyrus_communis pycom02g03610 pycom15g16430
rosa_chinensis RchiOBHm_Chr2g0090011
rosa_samantha Rh2BG048600 Rh2CG050800
rosa_wichuraiana Rw2G004060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 128
AccII CGCG 3 cut(s) 55, 200, 214
AciI CCGC 3 cut(s) 126, 200, 214
AclWI GGATC 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 276
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 3 cut(s) 88, 97, 228
AluI AGCT 3 cut(s) 88, 97, 228
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 119
AspLEI GCGC 3 cut(s) 57, 200, 214
AsuHPI GGTGA 1 cut(s) 55
BanII GRGCYC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 157
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 2 cut(s) 89, 174
BmuI ACTGGG 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 5
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 2 cut(s) 164, 254
BseBI CCWGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 80
BseMII CTCAG 2 cut(s) 107, 257
BseNI ACTGG 2 cut(s) 164, 254
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 3 cut(s) 55, 200, 214
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 176
BspACI CCGC 3 cut(s) 126, 200, 214
BspCNI CTCAG 2 cut(s) 106, 256
BspFNI CGCG 3 cut(s) 55, 200, 214
BspPI GGATC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 2 cut(s) 164, 254
BssAI RCCGGY 1 cut(s) 76
BssMI GATC 1 cut(s) 176
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 93, 243
BstEII GGTNACC 1 cut(s) 159
BstF5I GGATG 1 cut(s) 80
BstFNI CGCG 3 cut(s) 55, 200, 214
BstHHI GCGC 3 cut(s) 57, 200, 214
BstKTI GATC 1 cut(s) 179
BstMBI GATC 1 cut(s) 176
BstMWI GCNNNNNNNGC 3 cut(s) 52, 94, 125
BstNI CCWGG 1 cut(s) 157
BstPI GGTNACC 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 155
BstUI CGCG 3 cut(s) 55, 200, 214
BstV1I GCAGC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 3 cut(s) 57, 200, 214
Cfr10I RCCGGY 1 cut(s) 76
CseI GACGC 1 cut(s) 147
CviAII CATG 1 cut(s) 266
CviJI RGCY 6 cut(s) 46, 88, 97, 108, 206, 228
CviKI_1 RGCY 6 cut(s) 46, 88, 97, 108, 206, 228
DdeI CTNAG 2 cut(s) 93, 243
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 90
Eco32I GATATC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 88
Eco91I GGTNACC 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 155
EcoRV GATATC 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 1 cut(s) 269
FaiI YATR 2 cut(s) 267, 286
FatI CATG 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 24
GlaI GCGC 3 cut(s) 56, 199, 213
GluI GCNGC 1 cut(s) 120
HapII CCGG 1 cut(s) 77
HgaI GACGC 1 cut(s) 147
HhaI GCGC 3 cut(s) 57, 200, 214
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 3 cut(s) 55, 198, 212
HinP1I GCGC 3 cut(s) 55, 198, 212
HinfI GANTC 1 cut(s) 239
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 85, 137, 246
Hpy188III TCNNGA 1 cut(s) 36
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 58, 119
HpyCH4V TGCA 2 cut(s) 12, 193
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 94, 125
HpyF3I CTNAG 2 cut(s) 93, 243
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 3 cut(s) 55, 198, 212
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 8 cut(s) 22, 90, 132, 142, 144, 169, 177, 235
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 2 cut(s) 89, 174
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 159
MalI GATC 1 cut(s) 178
MbiI CCGCTC 1 cut(s) 128
MboI GATC 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 90
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 3 cut(s) 43, 133, 273
MroNI GCCGGC 1 cut(s) 76
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 3 cut(s) 55, 200, 214
MwoI GCNNNNNNNGC 3 cut(s) 52, 94, 125
NaeI GCCGGC 1 cut(s) 78
NdeII GATC 1 cut(s) 176
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PdiI GCCGGC 1 cut(s) 78
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 155
PspEI GGTNACC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 90
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 176
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 1 cut(s) 90
SetI ASST 5 cut(s) 29, 90, 99, 161, 230
SfaNI GCATC 2 cut(s) 89, 174
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SsiI CCGC 3 cut(s) 126, 200, 214
SspMI CTAG 1 cut(s) 24
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 155
TaqI TCGA 3 cut(s) 104, 224, 233
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 119
TspRI CASTG 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.