MD15G1182000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017045
Physical Location & Seq
Forward (+)
14426841 .. 14428639
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1182000.v1.1.491

Sequence Viewer

Length: 288 bp
ATGGCGTCCTGCAAAGTTATCTCTAGGTTGTCCTCCCGATTACAGCCCTTCGCGCGCAATCTGACCAAGACGTTACCGGCATCCGAGCTCTCTCAGCTCAAATCGAGCTTTCTCTCTCCGGCCTCCGCTCCCATGCGACGCATTTCTGGCCTTTCCAGGTTACCAGTGGAGTTGGGATCAATGATGCCGTTGCACAGCGCGGTGGCTTCGGCGCGGTTGATATCGAGCTTGTCGATTGACTCCCAGAGCTGGGGATTAGTTCCTCAAGGGATTTCAATGCCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.14

Weight (kDa)

11.62

Isoelectric Point (pI)

78.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55205 AT1G55205 AT3G13674
fragaria_vesca FvH4_1g04361
malus_domestica MD02G1043400.v1.1 MD15G1182000.v1.1
prunus_persica Prupe.7G233600_v2.0.a1
pyrus_communis pycom02g03610 pycom15g16430
rosa_chinensis RchiOBHm_Chr2g0090011
rosa_samantha Rh2BG048600 Rh2CG050800
rosa_wichuraiana Rw2G004060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 128
AccII CGCG 4 cut(s) 53, 55, 200, 214
AciI CCGC 3 cut(s) 126, 200, 214
AclWI GGATC 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 249, 250
AgsI TTSAA 1 cut(s) 276
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 5 cut(s) 88, 97, 108, 228, 249
AluI AGCT 5 cut(s) 88, 97, 108, 228, 249
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 1 cut(s) 184
AoxI GGCC 2 cut(s) 120, 148
AspLEI GCGC 4 cut(s) 55, 57, 200, 214
BanII GRGCYC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 90
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 157
BfaI CTAG 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 157
BmsI GCATC 2 cut(s) 89, 174
BpuEI CTTGAG 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 250
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 164
BseBI CCWGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 80
BseLI CCNNNNNNNGG 2 cut(s) 249, 250
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 164
BsePI GCGCGC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 249
Bsh1236I CGCG 4 cut(s) 53, 55, 200, 214
BshFI GGCC 2 cut(s) 122, 150
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 2 cut(s) 77, 119
BslI CCNNNNNNNGG 2 cut(s) 249, 250
BsnI GGCC 2 cut(s) 122, 150
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 176
BspACI CCGC 3 cut(s) 126, 200, 214
BspANI GGCC 2 cut(s) 122, 150
BspCNI CTCAG 1 cut(s) 106
BspFNI CGCG 4 cut(s) 53, 55, 200, 214
BspPI GGATC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 76
BssHII GCGCGC 1 cut(s) 53
BssMI GATC 1 cut(s) 176
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 159
BstF5I GGATG 1 cut(s) 80
BstFNI CGCG 4 cut(s) 53, 55, 200, 214
BstHHI GCGC 4 cut(s) 55, 57, 200, 214
BstKTI GATC 1 cut(s) 179
BstMBI GATC 1 cut(s) 176
BstMWI GCNNNNNNNGC 3 cut(s) 52, 94, 147
BstNI CCWGG 1 cut(s) 157
BstPI GGTNACC 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 155
BstUI CGCG 4 cut(s) 53, 55, 200, 214
BsuRI GGCC 2 cut(s) 122, 150
BtsCI GGATG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 4 cut(s) 55, 57, 200, 214
Cfr10I RCCGGY 1 cut(s) 76
CseI GACGC 1 cut(s) 147
CviAII CATG 1 cut(s) 133
CviJI RGCY 9 cut(s) 46, 88, 97, 108, 122, 150, 206, 228, 249
CviKI_1 RGCY 9 cut(s) 46, 88, 97, 108, 122, 150, 206, 228, 249
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 90
Eco32I GATATC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 88
Eco91I GGTNACC 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 155
EcoRV GATATC 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 1 cut(s) 136
FaiI YATR 2 cut(s) 134, 286
FatI CATG 1 cut(s) 132
FokI GGATG 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 90
FspBI CTAG 1 cut(s) 24
GlaI GCGC 4 cut(s) 54, 56, 199, 213
GsaI CCCAGC 1 cut(s) 253
HaeIII GGCC 2 cut(s) 122, 150
HapII CCGG 2 cut(s) 77, 119
HgaI GACGC 1 cut(s) 147
HhaI GCGC 4 cut(s) 55, 57, 200, 214
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 4 cut(s) 53, 55, 198, 212
HinP1I GCGC 4 cut(s) 53, 55, 198, 212
HinfI GANTC 1 cut(s) 239
HpaII CCGG 2 cut(s) 77, 119
Hpy188I TCNGA 2 cut(s) 63, 85
Hpy188III TCNNGA 1 cut(s) 36
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 12, 193
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 94, 147
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 4 cut(s) 53, 55, 198, 212
Kzo9I GATC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 9 cut(s) 22, 90, 132, 132, 142, 169, 177, 235, 257
LweI GCATC 2 cut(s) 89, 174
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 72, 159
MalI GATC 1 cut(s) 178
MbiI CCGCTC 1 cut(s) 128
MboI GATC 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 90
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 3 cut(s) 43, 133, 273
MspI CCGG 2 cut(s) 77, 119
MspR9I CCNGG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 4 cut(s) 53, 55, 200, 214
MwoI GCNNNNNNNGC 3 cut(s) 52, 94, 147
NdeII GATC 1 cut(s) 176
NlaIII CATG 1 cut(s) 136
PauI GCGCGC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 155
PspEI GGTNACC 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 249
PspGI CCWGG 1 cut(s) 155
PteI GCGCGC 1 cut(s) 53
SacI GAGCTC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 176
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 1 cut(s) 90
SetI ASST 8 cut(s) 29, 74, 90, 99, 110, 161, 230, 251
SfaNI GCATC 2 cut(s) 89, 174
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
SsiI CCGC 3 cut(s) 126, 200, 214
SspMI CTAG 1 cut(s) 24
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 155
TaiI ACGT 1 cut(s) 74
TaqI TCGA 3 cut(s) 104, 224, 233
TscAI CASTG 1 cut(s) 171
TspRI CASTG 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.