FvH4_1g05810

isoform X1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
3078615 .. 3082764
4150 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05810.t8

Sequence Viewer

Length: 1614 bp
ATGGGTGATGTATATATTGAAAAAGGGATATCTGAAATGCCTTTAACAGCCTATAATGATACTGTGATGAACACGAGTCTAGTCATTGAAAGCCTGGAGTTCTTCTCATCAATGGATGACATTTTTGACCGTCTATTGATATTGGCTAGTTATATTGGCCATCGATTTATTCAATTTGTAGAGGATCTTGCCCTCAGAGAATTTGATAGATACCTAGAAAATTTGGTGAATATTTCTGCTCGACAGCATTTAGAATCATTGAGACATGGCATTTGTAAATCATTTTCTGAAGATTCTTCATCATCTTCACAATCTTATATCTCTGATCGGAACCCTGAATTCTATGAAAAAGCCTCAGGCCGTAGGGATGAATTGCTTGTATATCCAAGATCTGAGATTGTACAAACCGACTCCAGTCATGCAGCTGTTTCATTCATTTCTAAAGGGTTGATGCTGCCATTGTATGGTTTACAGTTTGCCTGGAGGTTGGCAATGTCTTGTTGGAGAAGTTCTTTCTTATATTTTACAAGCGCTCATCAGCGAGTTTGTAGCATCGCAACTCGTGTACAGAGAACATTGCGAGGTTCATCTGATGATATTGGATGGTTGCAGCGCATTCCTAGCATGCCTTCTGTGGATGATGGTACAGAAAGATTCTTGGAATTGCTTGCAGGAATAAGGAAGGGAAAGCACGAACTGCCTGACTCATTTGTTTATCTGCTAATTCCAGGACTCTTTAGCAATCATGGTCCATTGTATTTTGTTGGAACTAAGAGATTCTTTTCGAAGATGGGTCTAGCATGCCATATTGCCAAAATTCACAGTGAGGTATCTGTTGAGCACAACGCGTGGGAGCTGAAGCAATATATCGAGGAGCTTTACTGGGGATCTGGTAAGCGTGTGATGTTGTTAGGGCACAGCAAGGGTGGTGTTGATGCTGCAGCTGCATTGTCAATCTACTGGAATGATTTGAAAGACAAAGTTGCTGGTTTAGCACTAGTACAGTGTCCATATGGGGGCACTCCTTTAGCTTCTGATATTCTTCGTGAAGGTCAGATTGCTGACAAAGAAACCCGAAGGATAATGGAGTTTTTGATATGCAAGCTAATCAAGGGTGATATACGGGCGCTGGAGGATCTTACATATGACAAAAGGAAGGAGTTCATCATGAAGTACAAGCTTCCTGCAGAGAAAATTCCTCTAATTTCCTTCCATTCTGAGGCAAGTATAGCCCCTGGTGTCCTTGCCACAATGACTCATATAGCTCATGCAGAAGTTCCATGGCTTCCCCTTGCGAAATTTGGCAATGAAGAATCGGATAACATTGTTCAAGCTAGTCACCAGTTGCCTGTAGTGATTCCTTTATCTGCGGCAATGGCTGTGTGTGCACTCCACCTAAAACTCAGGTATGGGGAGAAGAGTGATGGCTTAGTGACATGCCGTGATGCTGAAGTTCCAGGTTCAGTTGTAGTCAAGCCAGATCGGAAGCTTGACCATGCATGGATGGTTTATTCTTCGAGGAAAAAGAATGCTAGTGAGGCCGATGCTTCTGAAATGTGTGAGGCTTTATTAACTCTGCTTGTTGAGCTCGGCAAGGGAAAAGGTTTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

538

Amino Acids

60.25

Weight (kDa)

6.3

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 464
AccII CGCG 1 cut(s) 848
AciI CCGC 1 cut(s) 1370
AclWI GGATC 3 cut(s) 192, 895, 1143
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 6 cut(s) 200, 220, 338, 816, 1194, 1298
AcuI CTGAAG 3 cut(s) 309, 878, 1470
AfaI GTAC 5 cut(s) 402, 567, 646, 1002, 1175
AfeI AGCGCT 1 cut(s) 532
AfiI CCNNNNNNNGG 3 cut(s) 464, 1016, 1219
AflIII ACRYGT 1 cut(s) 846
AgsI TTSAA 6 cut(s) 20, 89, 173, 973, 1331, 1609
AhlI ACTAGT 1 cut(s) 997
AjnI CCWGG 5 cut(s) 93, 479, 727, 1234, 1456
Alw21I GWGCWC 3 cut(s) 843, 1390, 1590
Alw26I GTCTC 1 cut(s) 256
Alw44I GTGCAC 1 cut(s) 1386
AlwI GGATC 3 cut(s) 192, 895, 1143
Aor51HI AGCGCT 1 cut(s) 532
AoxI GGCC 3 cut(s) 157, 358, 1539
ApaLI GTGCAC 1 cut(s) 1386
ApeKI GCWGC 6 cut(s) 422, 454, 610, 938, 941, 944
ApoI RAATTY 6 cut(s) 200, 220, 338, 816, 1194, 1298
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
Asp700I GAANNNNTTC 1 cut(s) 1160
AspLEI GCGC 3 cut(s) 533, 615, 1129
AspS9I GGNCC 1 cut(s) 749
AsuHPI GGTGA 4 cut(s) 17, 238, 1127, 1331
AsuII TTCGAA 1 cut(s) 785
AvaII GGWCC 1 cut(s) 749
AxyI CCTNAGG 1 cut(s) 355
BaeGI GKGCMC 3 cut(s) 918, 1022, 1390
BalI TGGCCA 1 cut(s) 159
BanII GRGCYC 1 cut(s) 1590
BauI CACGAG 2 cut(s) 73, 561
Bbv12I GWGCWC 3 cut(s) 843, 1390, 1590
BbvI GCAGC 6 cut(s) 434, 441, 622, 925, 931, 953
BccI CCATC 6 cut(s) 168, 597, 635, 784, 1418, 1498
BceAI ACGGC 2 cut(s) 345, 1425
BciT130I CCWGG 5 cut(s) 95, 481, 729, 1236, 1458
BcoDI GTCTC 1 cut(s) 256
BcuI ACTAGT 1 cut(s) 997
BfaI CTAG 8 cut(s) 80, 147, 215, 621, 797, 998, 1335, 1533
BfmI CTRYAG 3 cut(s) 939, 1185, 1350
BfoI RGCGCY 2 cut(s) 534, 1130
BglII AGATCT 1 cut(s) 389
BisI GCNGC 7 cut(s) 423, 455, 611, 939, 942, 945, 1371
BlsI GCNGC 7 cut(s) 424, 456, 612, 940, 943, 946, 1372
Bme1390I CCNGG 5 cut(s) 95, 481, 729, 1236, 1458
Bme18I GGWCC 1 cut(s) 749
BmgT120I GGNCC 1 cut(s) 749
BmiI GGNNCC 1 cut(s) 332
BmrFI CCNGG 5 cut(s) 95, 481, 729, 1236, 1458
BmrI ACTGGG 1 cut(s) 892
BmsI GCATC 5 cut(s) 441, 561, 925, 1435, 1534
BmuI ACTGGG 1 cut(s) 892
BoxI GACNNNNGTC 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 89, 121
BpmI CTGGAG 4 cut(s) 116, 397, 502, 1151
Bpu14I TTCGAA 1 cut(s) 785
Bsa29I ATCGAT 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 1234, 1280
Bsc4I CCNNNNNNNGG 3 cut(s) 464, 1016, 1219
Bse1I ACTGG 4 cut(s) 414, 887, 965, 1342
Bse21I CCTNAGG 1 cut(s) 355
Bse3DI GCAATG 4 cut(s) 498, 575, 1312, 1380
BseBI CCWGG 5 cut(s) 95, 481, 729, 1236, 1458
BseCI ATCGAT 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 1234, 1280
BseGI GGATG 5 cut(s) 121, 373, 608, 643, 1509
BseLI CCNNNNNNNGG 3 cut(s) 464, 1016, 1219
BseMI GCAATG 4 cut(s) 498, 575, 1312, 1380
BseMII CTCAG 5 cut(s) 208, 369, 384, 1209, 1417
BseNI ACTGG 4 cut(s) 414, 887, 965, 1342
BseRI GAGGAG 1 cut(s) 887
BseSI GKGCMC 3 cut(s) 918, 1022, 1390
BseXI GCAGC 6 cut(s) 434, 441, 622, 925, 931, 953
Bsh1236I CGCG 1 cut(s) 848
BshFI GGCC 3 cut(s) 159, 360, 1541
BshVI ATCGAT 1 cut(s) 163
BsiHKAI GWGCWC 3 cut(s) 843, 1390, 1590
BslI CCNNNNNNNGG 3 cut(s) 464, 1016, 1219
BsmAI GTCTC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 615, 1534
BsnI GGCC 3 cut(s) 159, 360, 1541
Bsp119I TTCGAA 1 cut(s) 785
Bsp1286I GDGCHC 5 cut(s) 843, 918, 1022, 1390, 1590
Bsp1407I TGTACA 2 cut(s) 400, 565
Bsp143I GATC 6 cut(s) 184, 325, 389, 887, 1135, 1480
Bsp19I CCATGG 1 cut(s) 1280
BspACI CCGC 1 cut(s) 1370
BspANI GGCC 3 cut(s) 159, 360, 1541
BspCNI CTCAG 5 cut(s) 207, 368, 385, 1210, 1416
BspDI ATCGAT 1 cut(s) 163
BspFNI CGCG 1 cut(s) 848
BspHI TCATGA 1 cut(s) 1167
BspLI GGNNCC 1 cut(s) 332
BspMAI CTGCAG 2 cut(s) 943, 1189
BspPI GGATC 3 cut(s) 192, 895, 1143
BspT104I TTCGAA 1 cut(s) 785
BsrDI GCAATG 4 cut(s) 498, 575, 1312, 1380
BsrGI TGTACA 2 cut(s) 400, 565
BsrI ACTGG 4 cut(s) 414, 887, 965, 1342
BssECI CCNNGG 2 cut(s) 1234, 1280
BssMI GATC 6 cut(s) 184, 325, 389, 887, 1135, 1480
BssSI CACGAG 2 cut(s) 73, 561
BssT1I CCWWGG 1 cut(s) 1280
Bst2BI CACGAG 2 cut(s) 73, 561
Bst2UI CCWGG 5 cut(s) 95, 481, 729, 1236, 1458
Bst4CI ACNGT 5 cut(s) 64, 131, 474, 824, 1005
Bst6I CTCTTC 1 cut(s) 1412
BstAPI GCANNNNNTGC 1 cut(s) 697
BstAUI TGTACA 2 cut(s) 400, 565
BstBI TTCGAA 1 cut(s) 785
BstC8I GCNNGC 4 cut(s) 626, 669, 802, 1103
BstDEI CTNAG 7 cut(s) 194, 355, 393, 771, 1218, 1403, 1429
BstDSI CCRYGG 1 cut(s) 1280
BstF5I GGATG 5 cut(s) 121, 373, 608, 643, 1509
BstFNI CGCG 1 cut(s) 848
BstH2I RGCGCY 2 cut(s) 534, 1130
BstHHI GCGC 3 cut(s) 533, 615, 1129
BstKTI GATC 6 cut(s) 187, 328, 392, 890, 1138, 1483
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 6 cut(s) 184, 325, 389, 887, 1135, 1480
BstMWI GCNNNNNNNGC 9 cut(s) 621, 697, 944, 992, 1229, 1376, 1385, 1538, 1585
BstNI CCWGG 5 cut(s) 95, 481, 729, 1236, 1458
BstNSI RCATGY 3 cut(s) 628, 804, 1440
BstPAI GACNNNNGTC 1 cut(s) 414
BstSCI CCNGG 5 cut(s) 93, 479, 727, 1234, 1456
BstSFI CTRYAG 3 cut(s) 939, 1185, 1350
BstSLI GKGCMC 3 cut(s) 918, 1022, 1390
BstUI CGCG 1 cut(s) 848
BstV1I GCAGC 6 cut(s) 434, 441, 622, 925, 931, 953
BstX2I RGATCY 4 cut(s) 184, 389, 887, 1135
BstYI RGATCY 4 cut(s) 184, 389, 887, 1135
Bsu15I ATCGAT 1 cut(s) 163
Bsu36I CCTNAGG 1 cut(s) 355
BsuRI GGCC 3 cut(s) 159, 360, 1541
BsuTUI ATCGAT 1 cut(s) 163
BtgI CCRYGG 1 cut(s) 1280
BtgZI GCGATG 1 cut(s) 538
BtsCI GGATG 5 cut(s) 121, 373, 608, 643, 1509
BtsIMutI CAGTG 2 cut(s) 829, 1010
Cac8I GCNNGC 4 cut(s) 626, 669, 802, 1103
CciI TCATGA 1 cut(s) 1167
CfoI GCGC 3 cut(s) 533, 615, 1129
Cfr13I GGNCC 1 cut(s) 749
ClaI ATCGAT 1 cut(s) 163
Csp6I GTAC 5 cut(s) 401, 566, 645, 1001, 1174
CviQI GTAC 5 cut(s) 401, 566, 645, 1001, 1174
DdeI CTNAG 7 cut(s) 194, 355, 393, 771, 1218, 1403, 1429
DpnI GATC 6 cut(s) 186, 327, 391, 889, 1137, 1482
DpnII GATC 6 cut(s) 184, 325, 389, 887, 1135, 1480
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 1412
EarI CTCTTC 1 cut(s) 1412
Ecl136II GAGCTC 1 cut(s) 1588
Eco130I CCWWGG 1 cut(s) 1280
Eco24I GRGCYC 1 cut(s) 1590
Eco32I GATATC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 749
Eco47III AGCGCT 1 cut(s) 532
Eco53kI GAGCTC 1 cut(s) 1588
Eco57I CTGAAG 3 cut(s) 309, 878, 1470
Eco81I CCTNAGG 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 1588
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 5 cut(s) 93, 479, 727, 1234, 1456
EcoRV GATATC 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 1280
EcoT22I ATGCAT 1 cut(s) 1501
EcoT38I GRGCYC 1 cut(s) 1590
ErhI CCWWGG 1 cut(s) 1280
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FauNDI CATATG 2 cut(s) 1012, 1144
Fnu4HI GCNGC 7 cut(s) 423, 455, 611, 939, 942, 945, 1371
FokI GGATG 5 cut(s) 128, 380, 615, 650, 1516
FriOI GRGCYC 1 cut(s) 1590
Fsp4HI GCNGC 7 cut(s) 423, 455, 611, 939, 942, 945, 1371
FspBI CTAG 8 cut(s) 80, 147, 215, 621, 797, 998, 1335, 1533
GlaI GCGC 3 cut(s) 532, 614, 1128
GluI GCNGC 7 cut(s) 423, 455, 611, 939, 942, 945, 1371
GsuI CTGGAG 4 cut(s) 116, 397, 502, 1151
HaeII RGCGCY 2 cut(s) 534, 1130
HaeIII GGCC 3 cut(s) 159, 360, 1541
HhaI GCGC 3 cut(s) 533, 615, 1129
Hin6I GCGC 3 cut(s) 531, 613, 1127
HinP1I GCGC 3 cut(s) 531, 613, 1127
HindIII AAGCTT 2 cut(s) 1178, 1487
HphI GGTGA 4 cut(s) 17, 238, 1127, 1331
Hpy166II GTNNAC 3 cut(s) 470, 566, 1388
Hpy188III TCNNGA 2 cut(s) 1046, 1168
Hpy8I GTNNAC 3 cut(s) 470, 566, 1388
HpyAV CCTTC 6 cut(s) 639, 676, 1043, 1071, 1150, 1219
HpyCH4III ACNGT 5 cut(s) 64, 131, 474, 824, 1005
HpyF10VI GCNNNNNNNGC 9 cut(s) 621, 697, 944, 992, 1229, 1376, 1385, 1538, 1585
HpyF3I CTNAG 7 cut(s) 194, 355, 393, 771, 1218, 1403, 1429
HspAI GCGC 3 cut(s) 531, 613, 1127
Kzo9I GATC 6 cut(s) 184, 325, 389, 887, 1135, 1480
LmnI GCTCC 2 cut(s) 853, 874
Lsp1109I GCAGC 6 cut(s) 434, 441, 622, 925, 931, 953
LweI GCATC 5 cut(s) 441, 561, 925, 1435, 1534
MaeI CTAG 8 cut(s) 80, 147, 215, 621, 797, 998, 1335, 1533
MaeIII GTNAC 2 cut(s) 1337, 1432
MalI GATC 6 cut(s) 186, 327, 391, 889, 1137, 1482
MboI GATC 6 cut(s) 184, 325, 389, 887, 1135, 1480
MboII GAAGA 9 cut(s) 94, 288, 297, 302, 799, 1034, 1322, 1429, 1506
MflI RGATCY 4 cut(s) 184, 389, 887, 1135
MhlI GDGCHC 5 cut(s) 843, 918, 1022, 1390, 1590
MlsI TGGCCA 1 cut(s) 159
MluI ACGCGT 1 cut(s) 846
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 5 cut(s) 85, 404, 698, 726, 1249
MmeI TCCRAC 2 cut(s) 482, 745
Mox20I TGGCCA 1 cut(s) 159
Mph1103I ATGCAT 1 cut(s) 1501
MroXI GAANNNNTTC 1 cut(s) 1160
MscI TGGCCA 1 cut(s) 159
MseI TTAA 2 cut(s) 44, 1571
Msp20I TGGCCA 1 cut(s) 159
MspA1I CMGCKG 2 cut(s) 425, 944
MspR9I CCNGG 5 cut(s) 95, 481, 729, 1236, 1458
Mva1269I GAATGC 2 cut(s) 615, 1534
MvaI CCWGG 5 cut(s) 95, 481, 729, 1236, 1458
MvnI CGCG 1 cut(s) 848
MwoI GCNNNNNNNGC 9 cut(s) 621, 697, 944, 992, 1229, 1376, 1385, 1538, 1585
NcoI CCATGG 1 cut(s) 1280
NdeI CATATG 2 cut(s) 1012, 1144
NdeII GATC 6 cut(s) 184, 325, 389, 887, 1135, 1480
NlaIV GGNNCC 1 cut(s) 332
NmeAIII GCCGAG 1 cut(s) 1569
NmuCI GTSAC 2 cut(s) 1337, 1432
NsiI ATGCAT 1 cut(s) 1501
NspI RCATGY 3 cut(s) 628, 804, 1440
NspV TTCGAA 1 cut(s) 785
PaeI GCATGC 2 cut(s) 628, 804
PagI TCATGA 1 cut(s) 1167
PctI GAATGC 2 cut(s) 615, 1534
PdmI GAANNNNTTC 1 cut(s) 1160
PfeI GAWTC 6 cut(s) 254, 293, 654, 777, 1313, 1357
PflMI CCANNNNNTGG 1 cut(s) 464
PfoI TCCNGGA 1 cut(s) 727
PkrI GCNGC 7 cut(s) 424, 456, 612, 940, 943, 946, 1372
PleI GAGTC 5 cut(s) 84, 404, 698, 726, 1249
PpsI GAGTC 5 cut(s) 84, 404, 698, 726, 1249
PshAI GACNNNNGTC 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 1590
Psp6I CCWGG 5 cut(s) 93, 479, 727, 1234, 1456
PspGI CCWGG 5 cut(s) 93, 479, 727, 1234, 1456
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 1 cut(s) 749
PstI CTGCAG 2 cut(s) 943, 1189
PsuI RGATCY 4 cut(s) 184, 389, 887, 1135
PvuII CAGCTG 2 cut(s) 425, 944
RsaI GTAC 5 cut(s) 402, 567, 646, 1002, 1175
RsaNI GTAC 5 cut(s) 401, 566, 645, 1001, 1174
SacI GAGCTC 1 cut(s) 1590
SaqAI TTAA 2 cut(s) 44, 1571
SatI GCNGC 7 cut(s) 423, 455, 611, 939, 942, 945, 1371
Sau3AI GATC 6 cut(s) 184, 325, 389, 887, 1135, 1480
Sau96I GGNCC 1 cut(s) 749
SchI GAGTC 5 cut(s) 85, 404, 698, 726, 1249
ScrFI CCNGG 5 cut(s) 95, 481, 729, 1236, 1458
SduI GDGCHC 5 cut(s) 843, 918, 1022, 1390, 1590
SfaNI GCATC 5 cut(s) 441, 561, 925, 1435, 1534
SfcI CTRYAG 3 cut(s) 939, 1185, 1350
SfuI TTCGAA 1 cut(s) 785
SinI GGWCC 1 cut(s) 749
SpeI ACTAGT 1 cut(s) 997
SphI GCATGC 2 cut(s) 628, 804
SsiI CCGC 1 cut(s) 1370
SspI AATATT 1 cut(s) 232
SspMI CTAG 8 cut(s) 80, 147, 215, 621, 797, 998, 1335, 1533
SstI GAGCTC 1 cut(s) 1590
StyD4I CCNGG 5 cut(s) 93, 479, 727, 1234, 1456
StyI CCWWGG 1 cut(s) 1280
TaaI ACNGT 5 cut(s) 64, 131, 474, 824, 1005
TaqI TCGA 5 cut(s) 163, 241, 785, 870, 1517
TatI WGTACW 4 cut(s) 400, 565, 1000, 1173
TauI GCSGC 1 cut(s) 1373
TfiI GAWTC 6 cut(s) 254, 293, 654, 777, 1313, 1357
Tru1I TTAA 2 cut(s) 44, 1571
Tru9I TTAA 2 cut(s) 44, 1571
TscAI CASTG 2 cut(s) 829, 1010
TseFI GTSAC 2 cut(s) 1337, 1432
TseI GCWGC 6 cut(s) 422, 454, 610, 938, 941, 944
Tsp45I GTSAC 2 cut(s) 1337, 1432
TspRI CASTG 2 cut(s) 829, 1010
Van91I CCANNNNNTGG 1 cut(s) 464
VneI GTGCAC 1 cut(s) 1386
VpaK11BI GGWCC 1 cut(s) 749
XapI RAATTY 6 cut(s) 200, 220, 338, 816, 1194, 1298
XceI RCATGY 3 cut(s) 628, 804, 1440
XmnI GAANNNNTTC 1 cut(s) 1160
XspI CTAG 8 cut(s) 80, 147, 215, 621, 797, 998, 1335, 1533
Zsp2I ATGCAT 1 cut(s) 1501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.