Rorug02G0018000

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006455
Physical Location & Seq
Forward (+)
1481199 .. 1483356
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0018000.1

Sequence Viewer

Length: 1191 bp
ATGCGTGGGACTTGTTCCAATGTCGATGATTCCCCTCAAGAACAACCATCTGAGCAGCCAATAATATGTGAGTGTTCCAATGAGGAAAATTGTGAATGTAGTAGAGGGATGACTTCTGCTGCACATTTTATAAAACACCTTCCAGGTGAAAGTCAAGGGCCTCAGCTAAATAATGTCGGTGTTGGATTGCTTGCCAATTTTGAATCCGAGAGGGTCAATGGCCATCTTTTATCTCATCCTGCATCTTCATCTTCATCCTCATCCCAAAGATCACATTCACATCAAGCTTTAAAACGTACAAGCAGCCAGGTCTCAAACAAGGCAGAGTGTACTTCATCAATGGTCAATCATAACTCGTCGCAAAGACTAATGGTCCGAAGGAACTCGCATCCTAATTCAGAAGCCACAGTAAGAGGCCTAACAAGTTGCATTCCCAACAGTACTCCAAACCTTATTAACTCTGGAAATTGCACCACATTGCTTTTCGGATCCACTCCTCTTTGCCGATTCTCTCTTTCTCAAGGTCTTTTGGGGGTGCCTTCGAATCTTTTCCACTCTGTAATGCCTGCCATTCAGCTTCCCCACGCAAGTGGAGATTCAACATCTCAAATAGAAGAAGCTCCTGCTACTTTGGATGATAGTGGATTCCCTAGTGAGAACCAAATAATTGATATATGGAGGCAACTCCTCATGGAATCGACTCTATATGTACATAGGCCGGCCGATATATTGTTAGAAGGTTCAAGTTCCGTCTTTAGGGTAACGGCTGACAATGGATCAGTGGACTTCAGACTTGTAACAGAGAACGCTGAAGTTGTTAACCAATCACTAGTGTACTTTTCTATTGAAATGCGCAATCGCTTTGGAGGCATGAGGCTTGATGTGGATAACATGTCATATGAGGAACTATTGGCTTTAGAAGATCACATAGGGTATGTCAGCACAGGATTATCGGAGGAAGCAGCTGTTGCATCTCTCAAACGCAGTAATTATTTTCTGCTTGCTGATGAAAATGCTCAGAAAGAGTTTTGCAGCATCTGCCAGGAGGATTTTATAGAGGAAGATGAGCTAGGAACATTGGATTGCGGACACAGCTTCCACATTTGTTGCATCAAACAATGGCTAGGATATAAAAACGTGTGTCCTATATGCAAATCTCCTGCCTTATCTACTACGTTCTCACTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

396

Amino Acids

43.33

Weight (kDa)

5.05

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 341 - 385 6.6e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 344 - 385 3.7e-12 Ring finger domain
zf-C3HC4_2 PF13923 344 - 384 1.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 344 - 384 1.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 344 - 382 5.4e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
Acc16I TGCGCA 1 cut(s) 854
AccB1I GGYRCC 1 cut(s) 535
AciI CCGC 1 cut(s) 1086
AclWI GGATC 3 cut(s) 483, 496, 784
AcoI YGGCCR 2 cut(s) 220, 720
AcuI CTGAAG 2 cut(s) 772, 831
AfaI GTAC 5 cut(s) 298, 331, 442, 711, 836
AfiI CCNNNNNNNGG 1 cut(s) 756
AflIII ACRYGT 2 cut(s) 891, 1137
AgsI TTSAA 4 cut(s) 203, 600, 744, 848
AhdI GACNNNNNGTC 1 cut(s) 371
AhlI ACTAGT 1 cut(s) 829
AjnI CCWGG 3 cut(s) 142, 306, 1041
AleI CACNNNNGTG 1 cut(s) 588
AluBI AGCT 7 cut(s) 166, 287, 577, 620, 965, 1069, 1095
AluI AGCT 7 cut(s) 166, 287, 577, 620, 965, 1069, 1095
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 3 cut(s) 483, 496, 784
AlwNI CAGNNNCTG 1 cut(s) 1038
AoxI GGCC 5 cut(s) 158, 220, 415, 716, 720
ApeKI GCWGC 5 cut(s) 55, 119, 303, 962, 1032
Asp700I GAANNNNTTC 1 cut(s) 548
AspLEI GCGC 1 cut(s) 855
AspS9I GGNCC 2 cut(s) 158, 373
AsuHPI GGTGA 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 542
AvaII GGWCC 1 cut(s) 373
BalI TGGCCA 1 cut(s) 222
BamHI GGATCC 1 cut(s) 488
BanI GGYRCC 1 cut(s) 535
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 5 cut(s) 67, 106, 315, 974, 1044
BccI CCATC 2 cut(s) 55, 231
BceAI ACGGC 1 cut(s) 780
BciT130I CCWGG 3 cut(s) 144, 308, 1043
BcoDI GTCTC 1 cut(s) 316
BcuI ACTAGT 1 cut(s) 829
BfaI CTAG 4 cut(s) 651, 830, 1070, 1124
BisI GCNGC 5 cut(s) 56, 120, 304, 963, 1033
BlsI GCNGC 5 cut(s) 57, 121, 305, 964, 1034
BmcAI AGTACT 1 cut(s) 442
Bme1390I CCNGG 3 cut(s) 144, 308, 1043
Bme18I GGWCC 1 cut(s) 373
BmeRI GACNNNNNGTC 1 cut(s) 371
BmgT120I GGNCC 2 cut(s) 158, 373
BmiI GGNNCC 2 cut(s) 490, 537
BmrFI CCNGG 3 cut(s) 144, 308, 1043
BmsI GCATC 5 cut(s) 251, 397, 980, 1044, 1119
Bpu10I CCTNAGC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 542
BpuEI CTTGAG 2 cut(s) 21, 504
BsaI GGTCTC 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 756
Bse118I RCCGGY 1 cut(s) 718
Bse3DI GCAATG 1 cut(s) 476
BseBI CCWGG 3 cut(s) 144, 308, 1043
BseGI GGATG 6 cut(s) 114, 235, 254, 260, 388, 640
BseLI CCNNNNNNNGG 1 cut(s) 756
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 3 cut(s) 42, 176, 1031
BseRI GAGGAG 2 cut(s) 486, 677
BseX3I CGGCCG 1 cut(s) 720
BseXI GCAGC 5 cut(s) 67, 106, 315, 974, 1044
BsgI GTGCAG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 723
BshFI GGCC 5 cut(s) 160, 222, 417, 718, 722
BshNI GGYRCC 1 cut(s) 535
BsiEI CGRYCG 1 cut(s) 723
BsiSI CCGG 1 cut(s) 719
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 756
BsmAI GTCTC 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 5 cut(s) 160, 222, 417, 718, 722
Bso31I GGTCTC 1 cut(s) 316
Bsp119I TTCGAA 1 cut(s) 542
Bsp1407I TGTACA 1 cut(s) 709
Bsp143I GATC 4 cut(s) 269, 488, 776, 922
BspACI CCGC 1 cut(s) 1086
BspANI GGCC 5 cut(s) 160, 222, 417, 718, 722
BspCNI CTCAG 3 cut(s) 43, 175, 1030
BspLI GGNNCC 2 cut(s) 490, 537
BspPI GGATC 3 cut(s) 483, 496, 784
BspT104I TTCGAA 1 cut(s) 542
BspT107I GGYRCC 1 cut(s) 535
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 718
BsrGI TGTACA 1 cut(s) 709
BssAI RCCGGY 1 cut(s) 718
BssMI GATC 4 cut(s) 269, 488, 776, 922
Bst2UI CCWGG 3 cut(s) 144, 308, 1043
Bst4CI ACNGT 2 cut(s) 409, 440
BstAPI GCANNNNNTGC 2 cut(s) 968, 1038
BstAUI TGTACA 1 cut(s) 709
BstBI TTCGAA 1 cut(s) 542
BstC8I GCNNGC 4 cut(s) 192, 567, 720, 1002
BstDEI CTNAG 3 cut(s) 51, 162, 1017
BstF5I GGATG 6 cut(s) 114, 235, 254, 260, 388, 640
BstHHI GCGC 1 cut(s) 855
BstKTI GATC 4 cut(s) 272, 491, 779, 925
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 4 cut(s) 269, 488, 776, 922
BstMCI CGRYCG 1 cut(s) 723
BstMWI GCNNNNNNNGC 4 cut(s) 867, 968, 1038, 1092
BstNI CCWGG 3 cut(s) 144, 308, 1043
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 3 cut(s) 142, 306, 1041
BstV1I GCAGC 5 cut(s) 67, 106, 315, 974, 1044
BstX2I RGATCY 1 cut(s) 488
BstXI CCANNNNNNTGG 1 cut(s) 590
BstYI RGATCY 1 cut(s) 488
BstZI CGGCCG 1 cut(s) 720
BsuRI GGCC 5 cut(s) 160, 222, 417, 718, 722
BtsCI GGATG 6 cut(s) 114, 235, 254, 260, 388, 640
BtsIMutI CAGTG 1 cut(s) 786
Cac8I GCNNGC 4 cut(s) 192, 567, 720, 1002
CaiI CAGNNNCTG 1 cut(s) 1038
CfoI GCGC 1 cut(s) 855
Cfr10I RCCGGY 1 cut(s) 718
Cfr13I GGNCC 2 cut(s) 158, 373
Csp6I GTAC 5 cut(s) 297, 330, 441, 710, 835
CspCI CAANNNNNGTGG 2 cut(s) 1088, 1123
CviAII CATG 3 cut(s) 691, 871, 892
CviQI GTAC 5 cut(s) 297, 330, 441, 710, 835
DdeI CTNAG 3 cut(s) 51, 162, 1017
DpnI GATC 4 cut(s) 271, 490, 778, 924
DpnII GATC 4 cut(s) 269, 488, 776, 922
DraI TTTAAA 1 cut(s) 291
DriI GACNNNNNGTC 1 cut(s) 371
EaeI YGGCCR 2 cut(s) 220, 720
EagI CGGCCG 1 cut(s) 720
Eam1105I GACNNNNNGTC 1 cut(s) 371
EclXI CGGCCG 1 cut(s) 720
Eco147I AGGCCT 1 cut(s) 417
Eco31I GGTCTC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 373
Eco52I CGGCCG 1 cut(s) 720
Eco57I CTGAAG 2 cut(s) 772, 831
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 142, 306, 1041
FaeI CATG 3 cut(s) 694, 874, 895
FaqI GGGAC 1 cut(s) 22
FatI CATG 3 cut(s) 690, 870, 891
FauNDI CATATG 1 cut(s) 898
Fnu4HI GCNGC 5 cut(s) 56, 120, 304, 963, 1033
FokI GGATG 6 cut(s) 121, 222, 241, 247, 375, 647
FseI GGCCGGCC 1 cut(s) 722
Fsp4HI GCNGC 5 cut(s) 56, 120, 304, 963, 1033
FspBI CTAG 4 cut(s) 651, 830, 1070, 1124
FspI TGCGCA 1 cut(s) 854
GlaI GCGC 1 cut(s) 854
GluI GCNGC 5 cut(s) 56, 120, 304, 963, 1033
HaeIII GGCC 5 cut(s) 160, 222, 417, 718, 722
HapII CCGG 1 cut(s) 719
HhaI GCGC 1 cut(s) 855
Hin1II CATG 3 cut(s) 694, 874, 895
Hin6I GCGC 1 cut(s) 853
HinP1I GCGC 1 cut(s) 853
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 8 cut(s) 29, 203, 507, 544, 596, 645, 695, 700
HpaI GTTAAC 1 cut(s) 820
HpaII CCGG 1 cut(s) 719
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 4 cut(s) 330, 784, 820, 835
Hpy188I TCNGA 8 cut(s) 52, 208, 377, 400, 488, 791, 955, 1020
Hpy188III TCNNGA 2 cut(s) 38, 462
Hpy8I GTNNAC 4 cut(s) 330, 784, 820, 835
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 4 cut(s) 149, 372, 549, 731
HpyCH4III ACNGT 2 cut(s) 409, 440
HpyCH4IV ACGT 3 cut(s) 295, 1137, 1175
HpyCH4V TGCA 8 cut(s) 122, 242, 429, 471, 971, 1032, 1110, 1152
HpyF10VI GCNNNNNNNGC 4 cut(s) 867, 968, 1038, 1092
HpyF3I CTNAG 3 cut(s) 51, 162, 1017
HpySE526I ACGT 3 cut(s) 295, 1137, 1175
Hsp92II CATG 3 cut(s) 694, 874, 895
HspAI GCGC 1 cut(s) 853
KroI GCCGGC 1 cut(s) 718
KroNI GCCGGC 1 cut(s) 720
KspAI GTTAAC 1 cut(s) 820
Kzo9I GATC 4 cut(s) 269, 488, 776, 922
LmnI GCTCC 1 cut(s) 625
Lsp1109I GCAGC 5 cut(s) 67, 106, 315, 974, 1044
LweI GCATC 5 cut(s) 251, 397, 980, 1044, 1119
MaeI CTAG 4 cut(s) 651, 830, 1070, 1124
MaeII ACGT 3 cut(s) 295, 1137, 1175
MaeIII GTNAC 2 cut(s) 760, 796
MalI GATC 4 cut(s) 271, 490, 778, 924
MboI GATC 4 cut(s) 269, 488, 776, 922
MboII GAAGA 5 cut(s) 237, 243, 626, 932, 1073
MflI RGATCY 1 cut(s) 488
MlsI TGGCCA 1 cut(s) 222
MluCI AATT 6 cut(s) 88, 196, 394, 466, 666, 988
MluNI TGGCCA 1 cut(s) 222
MlyI GAGTC 1 cut(s) 694
MmeI TCCRAC 1 cut(s) 163
Mox20I TGGCCA 1 cut(s) 222
MroNI GCCGGC 1 cut(s) 718
MroXI GAANNNNTTC 1 cut(s) 548
MscI TGGCCA 1 cut(s) 222
MseI TTAA 4 cut(s) 290, 456, 819, 1189
MslI CAYNNNNRTG 1 cut(s) 588
Msp20I TGGCCA 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 965
MspI CCGG 1 cut(s) 719
MspR9I CCNGG 3 cut(s) 144, 308, 1043
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 3 cut(s) 144, 308, 1043
MwoI GCNNNNNNNGC 4 cut(s) 867, 968, 1038, 1092
NaeI GCCGGC 1 cut(s) 720
NdeI CATATG 1 cut(s) 898
NdeII GATC 4 cut(s) 269, 488, 776, 922
NgoMIV GCCGGC 1 cut(s) 718
NlaIII CATG 3 cut(s) 694, 874, 895
NlaIV GGNNCC 2 cut(s) 490, 537
NsbI TGCGCA 1 cut(s) 854
NspI RCATGY 1 cut(s) 895
NspV TTCGAA 1 cut(s) 542
OliI CACNNNNGTG 1 cut(s) 588
PceI AGGCCT 1 cut(s) 417
PciI ACATGT 1 cut(s) 891
PctI GAATGC 1 cut(s) 429
PdiI GCCGGC 1 cut(s) 720
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 7 cut(s) 29, 203, 507, 544, 596, 645, 695
PkrI GCNGC 5 cut(s) 57, 121, 305, 964, 1034
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PscI ACATGT 1 cut(s) 891
PsiI TTATAA 1 cut(s) 131
Psp6I CCWGG 3 cut(s) 142, 306, 1041
PspGI CCWGG 3 cut(s) 142, 306, 1041
PspN4I GGNNCC 2 cut(s) 490, 537
PspPI GGNCC 2 cut(s) 158, 373
PstNI CAGNNNCTG 1 cut(s) 1038
PsuI RGATCY 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 965
RigI GGCCGGCC 1 cut(s) 722
RsaI GTAC 5 cut(s) 298, 331, 442, 711, 836
RsaNI GTAC 5 cut(s) 297, 330, 441, 710, 835
RseI CAYNNNNRTG 1 cut(s) 588
SaqAI TTAA 4 cut(s) 290, 456, 819, 1189
SatI GCNGC 5 cut(s) 56, 120, 304, 963, 1033
Sau3AI GATC 4 cut(s) 269, 488, 776, 922
Sau96I GGNCC 2 cut(s) 158, 373
ScaI AGTACT 1 cut(s) 442
SchI GAGTC 1 cut(s) 694
ScrFI CCNGG 3 cut(s) 144, 308, 1043
SfaNI GCATC 5 cut(s) 251, 397, 980, 1044, 1119
SfuI TTCGAA 1 cut(s) 542
SinI GGWCC 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 2 cut(s) 36, 519
SmoI CTYRAG 2 cut(s) 36, 519
SpeI ACTAGT 1 cut(s) 829
Sse9I AATT 6 cut(s) 88, 196, 394, 466, 666, 988
SseBI AGGCCT 1 cut(s) 417
SsiI CCGC 1 cut(s) 1086
SspMI CTAG 4 cut(s) 651, 830, 1070, 1124
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 3 cut(s) 142, 306, 1041
TaaI ACNGT 2 cut(s) 409, 440
TaiI ACGT 3 cut(s) 298, 1140, 1178
TaqI TCGA 3 cut(s) 24, 542, 698
TasI AATT 6 cut(s) 88, 196, 394, 466, 666, 988
TatI WGTACW 4 cut(s) 329, 440, 709, 834
TfiI GAWTC 7 cut(s) 29, 203, 507, 544, 596, 645, 695
Tru1I TTAA 4 cut(s) 290, 456, 819, 1189
Tru9I TTAA 4 cut(s) 290, 456, 819, 1189
TscAI CASTG 1 cut(s) 786
TseI GCWGC 5 cut(s) 55, 119, 303, 962, 1032
TspDTI ATGAA 4 cut(s) 237, 243, 324, 1023
TspGWI ACGGA 1 cut(s) 739
TspRI CASTG 1 cut(s) 786
VpaK11BI GGWCC 1 cut(s) 373
XceI RCATGY 1 cut(s) 895
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 4 cut(s) 651, 830, 1070, 1124
ZrmI AGTACT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.