pycom02g04900

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0006455
Physical Location & Seq
Forward (+)
3202557 .. 3204445
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g04900.1

Sequence Viewer

Length: 1404 bp
ATGGAGTACACATTTCAATTTCCTAAGCTATGCAATATAGAACCCCGGAGTCGGAGATGGCTTTTTCTTCTCGGGGTAGTGTCTGTTACTTATTTATCGATTCAGTCGCTTTTGCTTCCCTATGGCATTGCTCTTCGGTCTCTATCGCCTCACAGTGAGGTTCCAGCACAAGTCAAAGGTAGCGGCCTCCCTGTTCATTCTTCTGCCAAGTCCATGATGGTTCGCAATCCTCTCATGGTAAATTCTTCGGATTCGATTGATGTTTCTATGTTTGGAGGAGAAATTAGGCAGGGTACTAAACCAAATGGAAAGGATGTATCTAGGGAAATCGATTTAATGTTAGAAGAAAAAGAAATAGACAATGATTTTGAAAGTGACACTGATCGAAATGTAGATGATGATTTCCCGTCTGAGAATGTTGTAGTCATAAATGAAAGTCTCGGCATTAAGAATCGAGAAACTGTTACTATTTTGGATAAGGCTGATGGAACTAGGGATGGCTTCCATTTGGAGAAGATTGTGTTGCCGAACTCTGAAATTACTAGGGAGAATGCTTCAAAAGAAAATTCAACCGTGAAAGCAAAAAAATCCGATGGTGTCAAAACTGCTTTTCCATCGTATCCACTCATTTTACCTGCAGCGAATTTGTTAGAAAATAGAAGCACTTCTGTTGGTTCTACTTCCTTGAAAAGTGGTGTTGTGGCTTCAAAAAATGGTTCTGTAGTGACGACAAGACCTGGGAAGAAGAAGATGAGGTGTGAATTGCCACCAAAGTCGATAACATCAATATCTGAGATGAATCGTATACTAGCGCGGAAGCGCGTTTCTTCTCTTTCACCGAAACCACGATGGTCCTCTGTACGTGACCAGGAGATTCTAGCTGCGAAGTCACAGATCGAGCATCCTCCTATTGCAATAAATGATCCAGAACTTTATGCTCCTCTCTTTAGAAATGTTTCCATGTTTAAAAGGAGTTATGAACTTATGGAACGAATGCTGAAAATCTATATCTACAAGGAGGGAAACAAGCCGATCTTTCATCAACCAATACTCAAGGGTTTATACGCTTCAGAAGGATGGTTCATGAAACTGATGCAGGGATATAAGCGTTTTCTTGTGAAGGATCCTAGCAAGGCTCATCTTTTTTATATGCCATTTAGTTCCCGGATGCTAGAGTATGCTCTATATGTACGTAACTCTCACAACCGTACAAACCTACGCCAATTTCTGAAGGAATATTCTGAAACAATTGCAGCAAAGTATCCTTATTTTAACAGAACTGATGGCGCATCGATCATTTTTTTGTTGCTTGCCATGACTGGGCTCCATATGAAACAAGGCACCACATGGAGCGCTGCATCAAAGCGCTTTGCAATGCTGATCCGACTTCCGGCTTCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

468

Amino Acids

52.78

Weight (kDa)

9.65

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 330 - 431 2.9e-14 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 643
AccB1I GGYRCC 1 cut(s) 1340
AccI GTMKAC 1 cut(s) 805
AccII CGCG 2 cut(s) 814, 822
AciI CCGC 2 cut(s) 183, 814
AclWI GGATC 4 cut(s) 917, 1118, 1131, 1375
AcsI RAATTY 3 cut(s) 241, 565, 643
AcuI CTGAAG 2 cut(s) 1053, 1250
AfaI GTAC 5 cut(s) 8, 295, 861, 1191, 1210
AfeI AGCGCT 2 cut(s) 1354, 1367
AfiI CCNNNNNNNGG 3 cut(s) 51, 1320, 1390
AgsI TTSAA 7 cut(s) 17, 371, 558, 570, 688, 708, 1398
AjnI CCWGG 2 cut(s) 736, 867
AluBI AGCT 2 cut(s) 28, 881
AluI AGCT 2 cut(s) 28, 881
Alw26I GTCTC 2 cut(s) 144, 443
AlwI GGATC 4 cut(s) 917, 1118, 1131, 1375
Ama87I CYCGRG 1 cut(s) 71
Aor51HI AGCGCT 2 cut(s) 1354, 1367
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 4 cut(s) 638, 881, 1253, 1355
ApoI RAATTY 3 cut(s) 241, 565, 643
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
Asp700I GAANNNNTTC 2 cut(s) 664, 955
AspLEI GCGC 5 cut(s) 814, 822, 1289, 1355, 1368
AspS9I GGNCC 1 cut(s) 852
AsuC2I CCSGG 2 cut(s) 46, 1165
AsuHPI GGTGA 1 cut(s) 828
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 852
BamHI GGATCC 1 cut(s) 1123
BanI GGYRCC 1 cut(s) 1340
BanII GRGCYC 1 cut(s) 1326
BbvI GCAGC 4 cut(s) 650, 868, 1265, 1342
BccI CCATC 9 cut(s) 51, 211, 479, 491, 587, 622, 843, 1071, 1277
BciT130I CCWGG 2 cut(s) 738, 869
BciVI GTATCC 2 cut(s) 630, 1272
BcnI CCSGG 2 cut(s) 46, 1165
BcoDI GTCTC 2 cut(s) 144, 443
BfaI CTAG 7 cut(s) 321, 492, 543, 809, 878, 1128, 1172
BfmI CTRYAG 2 cut(s) 636, 720
BfoI RGCGCY 2 cut(s) 1356, 1369
BfuAI ACCTGC 1 cut(s) 643
BfuI GTATCC 2 cut(s) 630, 1272
BisI GCNGC 5 cut(s) 184, 639, 882, 1254, 1356
BlsI GCNGC 5 cut(s) 185, 640, 883, 1255, 1357
Bme1390I CCNGG 4 cut(s) 46, 738, 869, 1165
Bme18I GGWCC 1 cut(s) 852
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 852
BmiI GGNNCC 4 cut(s) 162, 1125, 1325, 1342
BmrFI CCNGG 4 cut(s) 46, 738, 869, 1165
BmrI ACTGGG 1 cut(s) 1329
BmsI GCATC 5 cut(s) 910, 1083, 1158, 1298, 1367
BmuI ACTGGG 1 cut(s) 1329
Bpu10I CCTNAGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 1037
BpuMI CCSGG 2 cut(s) 46, 1165
Bsa29I ATCGAT 3 cut(s) 98, 330, 1292
BsaAI YACGTR 2 cut(s) 863, 1193
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 44, 737
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 1320, 1390
Bse1I ACTGG 1 cut(s) 1324
Bse3DI GCAATG 2 cut(s) 126, 1380
BseBI CCWGG 2 cut(s) 738, 869
BseCI ATCGAT 3 cut(s) 98, 330, 1292
BseDI CCNNGG 2 cut(s) 44, 737
BseGI GGATG 5 cut(s) 319, 502, 901, 1082, 1173
BseLI CCNNNNNNNGG 3 cut(s) 51, 1320, 1390
BseMI GCAATG 2 cut(s) 126, 1380
BseMII CTCAG 2 cut(s) 402, 783
BseNI ACTGG 1 cut(s) 1324
BseRI GAGGAG 2 cut(s) 291, 930
BseXI GCAGC 4 cut(s) 650, 868, 1265, 1342
Bsh1236I CGCG 2 cut(s) 814, 822
BshFI GGCC 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 1340
BshVI ATCGAT 3 cut(s) 98, 330, 1292
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 3 cut(s) 46, 1165, 1391
BslI CCNNNNNNNGG 3 cut(s) 51, 1320, 1390
BsmAI GTCTC 2 cut(s) 144, 443
BsmI GAATGC 2 cut(s) 556, 999
BsnI GGCC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 1326
Bsp143I GATC 7 cut(s) 382, 894, 922, 1032, 1123, 1293, 1380
BspACI CCGC 2 cut(s) 183, 814
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 403, 784
BspDI ATCGAT 3 cut(s) 98, 330, 1292
BspFNI CGCG 2 cut(s) 814, 822
BspHI TCATGA 1 cut(s) 1083
BspLI GGNNCC 4 cut(s) 162, 1125, 1325, 1342
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 1 cut(s) 643
BspPI GGATC 4 cut(s) 917, 1118, 1131, 1375
BspQI GCTCTTC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 1340
BspTNI GGTCTC 1 cut(s) 144
BsrDI GCAATG 2 cut(s) 126, 1380
BsrI ACTGG 1 cut(s) 1324
BssECI CCNNGG 2 cut(s) 44, 737
BssMI GATC 7 cut(s) 382, 894, 922, 1032, 1123, 1293, 1380
BssNAI GTATAC 1 cut(s) 806
Bst1107I GTATAC 1 cut(s) 806
Bst2UI CCWGG 2 cut(s) 738, 869
Bst4CI ACNGT 4 cut(s) 155, 463, 574, 1208
Bst6I CTCTTC 1 cut(s) 138
BstBAI YACGTR 2 cut(s) 863, 1193
BstC8I GCNNGC 1 cut(s) 1311
BstDEI CTNAG 3 cut(s) 24, 411, 792
BstF5I GGATG 5 cut(s) 319, 502, 901, 1082, 1173
BstFNI CGCG 2 cut(s) 814, 822
BstH2I RGCGCY 2 cut(s) 1356, 1369
BstHHI GCGC 5 cut(s) 814, 822, 1289, 1355, 1368
BstKTI GATC 7 cut(s) 385, 897, 925, 1035, 1126, 1296, 1383
BstMAI GTCTC 2 cut(s) 144, 443
BstMBI GATC 7 cut(s) 382, 894, 922, 1032, 1123, 1293, 1380
BstNI CCWGG 2 cut(s) 738, 869
BstSCI CCNGG 4 cut(s) 44, 736, 867, 1163
BstSFI CTRYAG 2 cut(s) 636, 720
BstSNI TACGTA 1 cut(s) 1193
BstUI CGCG 2 cut(s) 814, 822
BstV1I GCAGC 4 cut(s) 650, 868, 1265, 1342
BstX2I RGATCY 1 cut(s) 1123
BstYI RGATCY 1 cut(s) 1123
BstZ17I GTATAC 1 cut(s) 806
Bsu15I ATCGAT 3 cut(s) 98, 330, 1292
BsuI GTATCC 2 cut(s) 630, 1272
BsuRI GGCC 1 cut(s) 186
BsuTUI ATCGAT 3 cut(s) 98, 330, 1292
BtsCI GGATG 5 cut(s) 319, 502, 901, 1082, 1173
BtsIMutI CAGTG 2 cut(s) 160, 378
BveI ACCTGC 1 cut(s) 643
Cac8I GCNNGC 1 cut(s) 1311
CciI TCATGA 1 cut(s) 1083
CfoI GCGC 5 cut(s) 814, 822, 1289, 1355, 1368
Cfr13I GGNCC 1 cut(s) 852
ClaI ATCGAT 3 cut(s) 98, 330, 1292
Csp6I GTAC 5 cut(s) 7, 294, 860, 1190, 1209
CviAII CATG 6 cut(s) 214, 235, 961, 1084, 1315, 1347
CviQI GTAC 5 cut(s) 7, 294, 860, 1190, 1209
DdeI CTNAG 3 cut(s) 24, 411, 792
DpnI GATC 7 cut(s) 384, 896, 924, 1034, 1125, 1295, 1382
DpnII GATC 7 cut(s) 382, 894, 922, 1032, 1123, 1293, 1380
DraI TTTAAA 1 cut(s) 967
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco105I TACGTA 1 cut(s) 1193
Eco24I GRGCYC 1 cut(s) 1326
Eco31I GGTCTC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 852
Eco47III AGCGCT 2 cut(s) 1354, 1367
Eco57I CTGAAG 2 cut(s) 1053, 1250
Eco88I CYCGRG 1 cut(s) 71
EcoRII CCWGG 2 cut(s) 736, 867
EcoT38I GRGCYC 1 cut(s) 1326
FaeI CATG 6 cut(s) 217, 238, 964, 1087, 1318, 1350
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FatI CATG 6 cut(s) 213, 234, 960, 1083, 1314, 1346
FauNDI CATATG 1 cut(s) 1329
FblI GTMKAC 1 cut(s) 805
Fnu4HI GCNGC 5 cut(s) 184, 639, 882, 1254, 1356
FokI GGATG 5 cut(s) 326, 509, 888, 1089, 1180
FriOI GRGCYC 1 cut(s) 1326
Fsp4HI GCNGC 5 cut(s) 184, 639, 882, 1254, 1356
FspBI CTAG 7 cut(s) 321, 492, 543, 809, 878, 1128, 1172
GlaI GCGC 5 cut(s) 813, 821, 1288, 1354, 1367
GluI GCNGC 5 cut(s) 184, 639, 882, 1254, 1356
HaeII RGCGCY 2 cut(s) 1356, 1369
HaeIII GGCC 1 cut(s) 186
HapII CCGG 3 cut(s) 46, 1165, 1391
HhaI GCGC 5 cut(s) 814, 822, 1289, 1355, 1368
Hin1II CATG 6 cut(s) 217, 238, 964, 1087, 1318, 1350
Hin6I GCGC 5 cut(s) 812, 820, 1287, 1353, 1366
HinP1I GCGC 5 cut(s) 812, 820, 1287, 1353, 1366
HinfI GANTC 6 cut(s) 49, 100, 251, 451, 799, 874
HpaII CCGG 3 cut(s) 46, 1165, 1391
HphI GGTGA 1 cut(s) 828
Hpy166II GTNNAC 2 cut(s) 9, 806
Hpy188III TCNNGA 3 cut(s) 455, 926, 1084
Hpy8I GTNNAC 2 cut(s) 9, 806
HpyAV CCTTC 3 cut(s) 1067, 1114, 1225
HpyCH4III ACNGT 4 cut(s) 155, 463, 574, 1208
HpyCH4IV ACGT 2 cut(s) 862, 1192
HpyCH4V TGCA 7 cut(s) 33, 638, 914, 1096, 1253, 1358, 1373
HpyF3I CTNAG 3 cut(s) 24, 411, 792
HpySE526I ACGT 2 cut(s) 862, 1192
Hsp92II CATG 6 cut(s) 217, 238, 964, 1087, 1318, 1350
HspAI GCGC 5 cut(s) 812, 820, 1287, 1353, 1366
Kzo9I GATC 7 cut(s) 382, 894, 922, 1032, 1123, 1293, 1380
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 3 cut(s) 943, 1329, 1350
Lsp1109I GCAGC 4 cut(s) 650, 868, 1265, 1342
LweI GCATC 5 cut(s) 910, 1083, 1158, 1298, 1367
MaeI CTAG 7 cut(s) 321, 492, 543, 809, 878, 1128, 1172
MaeII ACGT 2 cut(s) 862, 1192
MaeIII GTNAC 7 cut(s) 85, 374, 463, 724, 863, 888, 1193
MalI GATC 7 cut(s) 384, 896, 924, 1034, 1125, 1295, 1382
MboI GATC 7 cut(s) 382, 894, 922, 1032, 1123, 1293, 1380
MfeI CAATTG 1 cut(s) 1248
MflI RGATCY 1 cut(s) 1123
MhlI GDGCHC 1 cut(s) 1326
MluCI AATT 9 cut(s) 17, 241, 282, 537, 565, 643, 761, 1223, 1248
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 32
MroXI GAANNNNTTC 2 cut(s) 664, 955
MseI TTAA 4 cut(s) 335, 447, 966, 1272
MspI CCGG 3 cut(s) 46, 1165, 1391
MspR9I CCNGG 4 cut(s) 46, 738, 869, 1165
MunI CAATTG 1 cut(s) 1248
Mva1269I GAATGC 2 cut(s) 556, 999
MvaI CCWGG 2 cut(s) 738, 869
MvnI CGCG 2 cut(s) 814, 822
NciI CCSGG 2 cut(s) 46, 1165
NdeI CATATG 1 cut(s) 1329
NdeII GATC 7 cut(s) 382, 894, 922, 1032, 1123, 1293, 1380
NlaIII CATG 6 cut(s) 217, 238, 964, 1087, 1318, 1350
NlaIV GGNNCC 4 cut(s) 162, 1125, 1325, 1342
NmeAIII GCCGAG 1 cut(s) 420
NmuCI GTSAC 4 cut(s) 374, 724, 863, 888
PagI TCATGA 1 cut(s) 1083
PciSI GCTCTTC 1 cut(s) 138
PctI GAATGC 2 cut(s) 556, 999
PdmI GAANNNNTTC 2 cut(s) 664, 955
PfeI GAWTC 5 cut(s) 100, 251, 451, 799, 874
PfoI TCCNGGA 1 cut(s) 1163
PkrI GCNGC 5 cut(s) 185, 640, 883, 1255, 1357
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Ppu21I YACGTR 2 cut(s) 863, 1193
Psp6I CCWGG 2 cut(s) 736, 867
PspGI CCWGG 2 cut(s) 736, 867
PspN4I GGNNCC 4 cut(s) 162, 1125, 1325, 1342
PspPI GGNCC 1 cut(s) 852
PstI CTGCAG 1 cut(s) 640
PsuI RGATCY 1 cut(s) 1123
RsaI GTAC 5 cut(s) 8, 295, 861, 1191, 1210
RsaNI GTAC 5 cut(s) 7, 294, 860, 1190, 1209
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 4 cut(s) 335, 447, 966, 1272
SatI GCNGC 5 cut(s) 184, 639, 882, 1254, 1356
Sau3AI GATC 7 cut(s) 382, 894, 922, 1032, 1123, 1293, 1380
Sau96I GGNCC 1 cut(s) 852
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 4 cut(s) 46, 738, 869, 1165
SduI GDGCHC 1 cut(s) 1326
SfaNI GCATC 5 cut(s) 910, 1083, 1158, 1298, 1367
SfcI CTRYAG 2 cut(s) 636, 720
SinI GGWCC 1 cut(s) 852
SmlI CTYRAG 1 cut(s) 1052
SmoI CTYRAG 1 cut(s) 1052
SnaBI TACGTA 1 cut(s) 1193
Sse9I AATT 9 cut(s) 17, 241, 282, 537, 565, 643, 761, 1223, 1248
SsiI CCGC 2 cut(s) 183, 814
SspI AATATT 1 cut(s) 1238
SspMI CTAG 7 cut(s) 321, 492, 543, 809, 878, 1128, 1172
StyD4I CCNGG 4 cut(s) 44, 736, 867, 1163
TaaI ACNGT 4 cut(s) 155, 463, 574, 1208
TaiI ACGT 2 cut(s) 865, 1195
TaqI TCGA 8 cut(s) 98, 254, 330, 385, 454, 776, 897, 1292
TaqII GACCGA 1 cut(s) 126
TasI AATT 9 cut(s) 17, 241, 282, 537, 565, 643, 761, 1223, 1248
TatI WGTACW 1 cut(s) 6
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 5 cut(s) 100, 251, 451, 799, 874
Tru1I TTAA 4 cut(s) 335, 447, 966, 1272
Tru9I TTAA 4 cut(s) 335, 447, 966, 1272
TscAI CASTG 2 cut(s) 160, 385
TseFI GTSAC 4 cut(s) 374, 724, 863, 888
TseI GCWGC 4 cut(s) 638, 881, 1253, 1355
Tsp45I GTSAC 4 cut(s) 374, 724, 863, 888
TspDTI ATGAA 8 cut(s) 185, 447, 812, 993, 1028, 1072, 1100, 1346
TspRI CASTG 2 cut(s) 160, 385
VpaK11BI GGWCC 1 cut(s) 852
XapI RAATTY 3 cut(s) 241, 565, 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 805
XmnI GAANNNNTTC 2 cut(s) 664, 955
XspI CTAG 7 cut(s) 321, 492, 543, 809, 878, 1128, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.