FvH4_1g05800

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006455
Physical Location & Seq
Forward (+)
3074138 .. 3077807
3670 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05800.t5

Sequence Viewer

Length: 1437 bp
ATGGACTGCTCGGTTCAATTTCTCAAGCTATGCCATATAGAAACCCGGAGGCGGCTGTTAGTTCTGGGGGTAGTGGCTGTTACTTATTTAATGTTTCAGTGGCTGTTGCTTCCCTATGAAAATGCTCTCCAGTCTCTATTGCCCCGAAGTCAGGTTCCAGATCATGCCACAGGTAGCTTCCTCACAATCCATTCTTCTGCCAAGTCTGTGATGGTTCGCAATCCTCTAACAGTGAATTCTTCGGATTTGATTGATGCTCCTAGATTTGGTGGGGTGGAGAAATATGCTGATAACTCTAGTCTTGGAGGAGAGACTGTGGATAAAAGTGAACCAAATGAAAAGGAAGGATTTAAGGAAATTGATTCAGTATTGGAAGAGAAAGAGATGGATAATACTTTTGAACATGCTGCAGATAGAAATGTAGATGAAAATTTTCCATCTGGGAATGGTGTAGATACTGATGCAAGTCTAACCTTGGTCAGCATTAGCAAGGAAGAAAATGGTTCTAATTTAGTCAAGACCAATGAAGCTAGCTATGACTTCCCAGAGCCAACTGTGCTATCAAAAGATGAAGTTTCTACAGAGAATACTCTGGAAGTAAACATGACTATGGCAGCAAAGCATTCCGAGGGTGTCAAAACTATATTTCCATCCTCTCCACTCATTTTGCCTGCAACAGCTTCATTCACACACCAGACCGATGTAACTTATGTAAGTTACTTGGTGTCCAATGCAAGCTCATCTGTTGGTTCTGCTTTCCTGGAAAGTGATATTGTAACTATAAAAAATGATTCTTTGACAAGGACAAGTCCTGGGAAGAAGATGATGAAGTGTAACATGCCACCAAAATCAATAACATCAATAGATGAGATGAACCTTACACTGGTGCGGCACCATGCTAAACCGCGTGCATTGAGACCACGGTGGTCCTCTGTGCGTGACCAGGATATTCTAGCTGTGAAGTCACAGATCCAGCATCCTCCTGTGGCCAAAAATGATCGAGAACTTTATGCCCCTCTCTATCGCAATGTTTCAATGTTCAAAAGGAGTTATGAACTCATGGAACGCACATTGAAAGTCTATATCTACAAGGAGGGAAACAAACCTATCTTTCATCAACCAATAATGAAGGGGTTATATGCTTCTGAAGGATGGTTCATGAAACTGATGGAGGGAGACAAACGTTTTGTGGTGAAGGATCCACGAAAGGCTCATCTGTTTTATATGCCATTCAGTTCAAGGATGCTAGAGTTCACTTTGTATGTTCGTAACTCTCACAACAGGACAAAACTACGCCAATATTTAAAAGAGTATTCTGAAACAATTGCAGCAAAGTATCCTTTCTGGAACAGAACTGGTGGAGCAGATCATTTTCTTGTTGCCTGTCATGACTGGGCACCATATGGAACGTTGCATCAAAGCCCTCTGCAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

479

Amino Acids

54.13

Weight (kDa)

6.96

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 355 - 636 1.2e-63 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 891, 1396
AccII CGCG 1 cut(s) 907
AciI CCGC 3 cut(s) 52, 889, 905
AclI AACGTT 2 cut(s) 1183, 1409
AclWI GGATC 3 cut(s) 964, 1193, 1206
AcoI YGGCCR 1 cut(s) 987
AcsI RAATTY 2 cut(s) 235, 430
AcuI CTGAAG 1 cut(s) 1167
AfiI CCNNNNNNNGG 4 cut(s) 51, 151, 266, 883
AgsI TTSAA 6 cut(s) 17, 401, 1035, 1042, 1075, 1239
AjnI CCWGG 3 cut(s) 759, 811, 942
AluBI AGCT 7 cut(s) 28, 177, 530, 534, 680, 738, 956
AluI AGCT 7 cut(s) 28, 177, 530, 534, 680, 738, 956
Alw26I GTCTC 4 cut(s) 138, 305, 910, 1170
AlwI GGATC 3 cut(s) 964, 1193, 1206
AlwNI CAGNNNCTG 1 cut(s) 103
AoxI GGCC 1 cut(s) 987
ApeKI GCWGC 3 cut(s) 407, 614, 1328
ApoI RAATTY 2 cut(s) 235, 430
ArsI GACNNNNNNTTYG 2 cut(s) 1169, 1201
Asp700I GAANNNNTTC 1 cut(s) 432
AspS9I GGNCC 1 cut(s) 927
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 1204
AsuNHI GCTAGC 1 cut(s) 530
AvaII GGWCC 1 cut(s) 927
BaeGI GKGCMC 1 cut(s) 1399
BalI TGGCCA 1 cut(s) 989
BamHI GGATCC 1 cut(s) 1198
BanI GGYRCC 2 cut(s) 891, 1396
BbvI GCAGC 3 cut(s) 394, 626, 1340
BccI CCATC 6 cut(s) 205, 379, 445, 658, 1146, 1162
BciT130I CCWGG 3 cut(s) 761, 813, 944
BciVI GTATCC 1 cut(s) 1347
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 4 cut(s) 138, 305, 910, 1170
BfaI CTAG 5 cut(s) 261, 297, 531, 953, 1247
BfmI CTRYAG 2 cut(s) 408, 579
BfuI GTATCC 1 cut(s) 1347
BisI GCNGC 5 cut(s) 53, 408, 615, 890, 1329
BlsI GCNGC 5 cut(s) 54, 409, 616, 891, 1330
Bme1390I CCNGG 4 cut(s) 46, 761, 813, 944
Bme18I GGWCC 1 cut(s) 927
BmgT120I GGNCC 1 cut(s) 927
BmiI GGNNCC 4 cut(s) 156, 893, 1200, 1398
BmrFI CCNGG 4 cut(s) 46, 761, 813, 944
BmrI ACTGGG 1 cut(s) 1402
BmsI GCATC 5 cut(s) 244, 451, 985, 1233, 1423
BmtI GCTAGC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 1402
BpmI CTGGAG 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 910
BsaJI CCNNGG 4 cut(s) 474, 627, 812, 920
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 151, 266, 883
Bse1I ACTGG 4 cut(s) 130, 888, 1360, 1397
Bse3DI GCAATG 2 cut(s) 1033, 1436
BseBI CCWGG 3 cut(s) 761, 813, 944
BseDI CCNNGG 4 cut(s) 474, 627, 812, 920
BseGI GGATG 4 cut(s) 650, 976, 1157, 1248
BseLI CCNNNNNNNGG 4 cut(s) 51, 151, 266, 883
BseMI GCAATG 2 cut(s) 1033, 1436
BseNI ACTGG 4 cut(s) 130, 888, 1360, 1397
BseRI GAGGAG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 1399
BseXI GCAGC 3 cut(s) 394, 626, 1340
Bsh1236I CGCG 1 cut(s) 907
BshFI GGCC 1 cut(s) 989
BshNI GGYRCC 2 cut(s) 891, 1396
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 4 cut(s) 51, 151, 266, 883
BsmAI GTCTC 4 cut(s) 138, 305, 910, 1170
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 1 cut(s) 989
Bso31I GGTCTC 1 cut(s) 910
Bsp1286I GDGCHC 1 cut(s) 1399
Bsp143I GATC 5 cut(s) 160, 969, 997, 1198, 1366
BspACI CCGC 3 cut(s) 52, 889, 905
BspANI GGCC 1 cut(s) 989
BspFNI CGCG 1 cut(s) 907
BspHI TCATGA 2 cut(s) 1158, 1387
BspLI GGNNCC 4 cut(s) 156, 893, 1200, 1398
BspMAI CTGCAG 1 cut(s) 412
BspOI GCTAGC 1 cut(s) 534
BspPI GGATC 3 cut(s) 964, 1193, 1206
BspT107I GGYRCC 2 cut(s) 891, 1396
BspTNI GGTCTC 1 cut(s) 910
BsrDI GCAATG 2 cut(s) 1033, 1436
BsrI ACTGG 4 cut(s) 130, 888, 1360, 1397
BssECI CCNNGG 4 cut(s) 474, 627, 812, 920
BssMI GATC 5 cut(s) 160, 969, 997, 1198, 1366
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 3 cut(s) 761, 813, 944
Bst4CI ACNGT 4 cut(s) 232, 316, 556, 924
Bst6I CTCTTC 1 cut(s) 369
BstC8I GCNNGC 4 cut(s) 532, 672, 736, 909
BstDSI CCRYGG 1 cut(s) 920
BstF5I GGATG 4 cut(s) 650, 976, 1157, 1248
BstFNI CGCG 1 cut(s) 907
BstKTI GATC 5 cut(s) 163, 972, 1000, 1201, 1369
BstMAI GTCTC 4 cut(s) 138, 305, 910, 1170
BstMBI GATC 5 cut(s) 160, 969, 997, 1198, 1366
BstMWI GCNNNNNNNGC 1 cut(s) 556
BstNI CCWGG 3 cut(s) 761, 813, 944
BstNSI RCATGY 2 cut(s) 407, 841
BstSCI CCNGG 4 cut(s) 44, 759, 811, 942
BstSFI CTRYAG 2 cut(s) 408, 579
BstSLI GKGCMC 1 cut(s) 1399
BstUI CGCG 1 cut(s) 907
BstV1I GCAGC 3 cut(s) 394, 626, 1340
BstX2I RGATCY 2 cut(s) 969, 1198
BstYI RGATCY 2 cut(s) 969, 1198
BsuI GTATCC 1 cut(s) 1347
BsuRI GGCC 1 cut(s) 989
BtgI CCRYGG 1 cut(s) 920
BtsCI GGATG 4 cut(s) 650, 976, 1157, 1248
BtsIMutI CAGTG 3 cut(s) 104, 237, 881
Cac8I GCNNGC 4 cut(s) 532, 672, 736, 909
CaiI CAGNNNCTG 1 cut(s) 103
CciI TCATGA 2 cut(s) 1158, 1387
Cfr13I GGNCC 1 cut(s) 927
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 8 cut(s) 164, 404, 604, 838, 896, 1060, 1159, 1388
DpnI GATC 5 cut(s) 162, 971, 999, 1200, 1368
DpnII GATC 5 cut(s) 160, 969, 997, 1198, 1366
DraI TTTAAA 1 cut(s) 1305
EaeI YGGCCR 1 cut(s) 987
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 910
Eco47I GGWCC 1 cut(s) 927
Eco57I CTGAAG 1 cut(s) 1167
EcoRI GAATTC 1 cut(s) 235
EcoRII CCWGG 3 cut(s) 759, 811, 942
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 8 cut(s) 167, 407, 607, 841, 899, 1063, 1162, 1391
FatI CATG 8 cut(s) 163, 403, 603, 837, 895, 1059, 1158, 1387
FauNDI CATATG 1 cut(s) 1402
Fnu4HI GCNGC 5 cut(s) 53, 408, 615, 890, 1329
FokI GGATG 4 cut(s) 637, 963, 1164, 1255
Fsp4HI GCNGC 5 cut(s) 53, 408, 615, 890, 1329
FspBI CTAG 5 cut(s) 261, 297, 531, 953, 1247
GluI GCNGC 5 cut(s) 53, 408, 615, 890, 1329
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 989
HapII CCGG 1 cut(s) 46
Hin1II CATG 8 cut(s) 167, 407, 607, 841, 899, 1063, 1162, 1391
HinfI GANTC 2 cut(s) 362, 791
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 1204
Hpy166II GTNNAC 3 cut(s) 329, 601, 1254
Hpy188I TCNGA 4 cut(s) 244, 628, 1147, 1318
Hpy188III TCNNGA 7 cut(s) 158, 517, 593, 1001, 1159, 1345, 1388
Hpy8I GTNNAC 3 cut(s) 329, 601, 1254
HpyAV CCTTC 4 cut(s) 338, 1123, 1142, 1189
HpyCH4III ACNGT 4 cut(s) 232, 316, 556, 924
HpyCH4IV ACGT 2 cut(s) 1183, 1409
HpyCH4V TGCA 8 cut(s) 410, 464, 674, 734, 911, 1328, 1414, 1429
HpyF10VI GCNNNNNNNGC 1 cut(s) 556
HpySE526I ACGT 2 cut(s) 1183, 1409
Hsp92II CATG 8 cut(s) 167, 407, 607, 841, 899, 1063, 1162, 1391
Kzo9I GATC 5 cut(s) 160, 969, 997, 1198, 1366
LmnI GCTCC 2 cut(s) 262, 1361
Lsp1109I GCAGC 3 cut(s) 394, 626, 1340
LweI GCATC 5 cut(s) 244, 451, 985, 1233, 1423
MaeI CTAG 5 cut(s) 261, 297, 531, 953, 1247
MaeII ACGT 2 cut(s) 1183, 1409
MaeIII GTNAC 8 cut(s) 79, 703, 716, 775, 833, 938, 963, 1268
MalI GATC 5 cut(s) 162, 971, 999, 1200, 1368
MboI GATC 5 cut(s) 160, 969, 997, 1198, 1366
MboII GAAGA 6 cut(s) 186, 231, 386, 506, 829, 832
MfeI CAATTG 1 cut(s) 1323
MflI RGATCY 2 cut(s) 969, 1198
MhlI GDGCHC 1 cut(s) 1399
MlsI TGGCCA 1 cut(s) 989
MluCI AATT 6 cut(s) 17, 235, 357, 430, 508, 1323
MluNI TGGCCA 1 cut(s) 989
Mox20I TGGCCA 1 cut(s) 989
MroXI GAANNNNTTC 1 cut(s) 432
MscI TGGCCA 1 cut(s) 989
MseI TTAA 3 cut(s) 89, 351, 1304
MslI CAYNNNNRTG 1 cut(s) 608
Msp20I TGGCCA 1 cut(s) 989
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 4 cut(s) 46, 761, 813, 944
MunI CAATTG 1 cut(s) 1323
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 3 cut(s) 761, 813, 944
MvnI CGCG 1 cut(s) 907
MwoI GCNNNNNNNGC 1 cut(s) 556
NciI CCSGG 1 cut(s) 46
NdeI CATATG 1 cut(s) 1402
NdeII GATC 5 cut(s) 160, 969, 997, 1198, 1366
NheI GCTAGC 1 cut(s) 530
NlaIII CATG 8 cut(s) 167, 407, 607, 841, 899, 1063, 1162, 1391
NlaIV GGNNCC 4 cut(s) 156, 893, 1200, 1398
NmuCI GTSAC 2 cut(s) 938, 963
NspI RCATGY 2 cut(s) 407, 841
PagI TCATGA 2 cut(s) 1158, 1387
PctI GAATGC 1 cut(s) 622
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 2 cut(s) 362, 791
PfoI TCCNGGA 1 cut(s) 759
PkrI GCNGC 5 cut(s) 54, 409, 616, 891, 1330
Psp1406I AACGTT 2 cut(s) 1183, 1409
Psp6I CCWGG 3 cut(s) 759, 811, 942
PspGI CCWGG 3 cut(s) 759, 811, 942
PspN4I GGNNCC 4 cut(s) 156, 893, 1200, 1398
PspPI GGNCC 1 cut(s) 927
PstI CTGCAG 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 103
PsuI RGATCY 2 cut(s) 969, 1198
RseI CAYNNNNRTG 1 cut(s) 608
SaqAI TTAA 3 cut(s) 89, 351, 1304
SatI GCNGC 5 cut(s) 53, 408, 615, 890, 1329
Sau3AI GATC 5 cut(s) 160, 969, 997, 1198, 1366
Sau96I GGNCC 1 cut(s) 927
ScrFI CCNGG 4 cut(s) 46, 761, 813, 944
SduI GDGCHC 1 cut(s) 1399
SfaNI GCATC 5 cut(s) 244, 451, 985, 1233, 1423
SfcI CTRYAG 2 cut(s) 408, 579
SinI GGWCC 1 cut(s) 927
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 6 cut(s) 17, 235, 357, 430, 508, 1323
SsiI CCGC 3 cut(s) 52, 889, 905
SspI AATATT 1 cut(s) 1301
SspMI CTAG 5 cut(s) 261, 297, 531, 953, 1247
StyD4I CCNGG 4 cut(s) 44, 759, 811, 942
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 4 cut(s) 232, 316, 556, 924
TaiI ACGT 2 cut(s) 1186, 1412
TaqI TCGA 1 cut(s) 1000
TaqII GACCGA 1 cut(s) 713
TasI AATT 6 cut(s) 17, 235, 357, 430, 508, 1323
TauI GCSGC 2 cut(s) 55, 892
TfiI GAWTC 2 cut(s) 362, 791
Tru1I TTAA 3 cut(s) 89, 351, 1304
Tru9I TTAA 3 cut(s) 89, 351, 1304
TscAI CASTG 3 cut(s) 104, 237, 888
TseFI GTSAC 2 cut(s) 938, 963
TseI GCWGC 3 cut(s) 407, 614, 1328
Tsp45I GTSAC 2 cut(s) 938, 963
TspRI CASTG 3 cut(s) 104, 237, 888
VpaK11BI GGWCC 1 cut(s) 927
XapI RAATTY 2 cut(s) 235, 430
XceI RCATGY 2 cut(s) 407, 841
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 5 cut(s) 261, 297, 531, 953, 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.