pycom15g17330

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006455
Physical Location & Seq
Forward (+)
12208327 .. 12210602
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g17330.1

Sequence Viewer

Length: 1740 bp
ATGGGGTGCACATTTCAATTTCCTAAGCTATGCAATATAGAATCCCGGAGCCGGAGGTGGCTTTTACTTTTGGGGGTACTGTCTGTTACTTATTTAGCATTTCAGTCGCTGTTACTTCCCTATGGAATCGCTCTTCGGTCTCTATTGCCACAGAGTAAGGATACATTGCAAGTCAAAGGTAGCGTCCTCGCTGTTCATTCTTCTGCCAAGTCCATGATGGTTCGCAATCCTCTAACGGTAAATACTTCAGATTCAATTGATGTTTCTATGTTTGGAGGAGAAATTAGGCAGGGTACTGAACCAAAGGGAAAGGATGTATATAAGGAAATTGATTTAATGTTAGAAGAAAAGGGAATAGACAATAATTTTGAAAGTGACGTTGATCGAAATGTAGATGATGATTTTCCGTCTGAGAATGTTGTAGTCATAAATGAAAGTCTAGCATTAGTCAGCATTAAGAATCGAGAAAATGTTACTGTTTTGGACAAGGCTGATGAAACTAGGTATGGCTTCCATTTGGAGAAGATTGTGTTACCGAACTCTGAAATTACTAGCGTGGGTGCTTCAAAAGAAAATTCAACCGTGACAGCGAAAAAATTTGATACTGCTTTTCCATCGTCTCCACTCATTTTACCTGCAGTGAATTTGTTAGAAAATAGAAGCACTTCTGTTGGTTCTATTTCCTTGAAAAGGGTTGTTGTGGCTTCAAAAAATGGTTTAGTGATGACCAGATCTGGAAAGAAGAAGATGAAGAGTGATTTGCCACCAAAGTCGATAACATCAATATCTGAGATGAATCGTATACTAGTGCGGAAGCGTGTTTCTTCTAATTCACCAAAACCACGATGGTCCTCTGTACGTGACCAGGAGATTCTAGCTGCGAAGTCACAGGTCGAGCGTCCTCCTATTGCAATAAATGATCCAGAACTTTATGCTCCTCTCTTTAGAAATGTTTCCGTGTTTAAAAGGAGTTATGAACTTATGGAACGCACACTGAAAATATATATCTACAAGGAGGGAAAAAAGCCGATCTTTCATCAACCAATACTCAAGGGATTATATGCTTCAGAAGGATGGTTCATGAAACTGATGAAGGGATATAAGCGCTTTCTTGTGAAGGATCCACGCAAGGCTCATCTGTTTTATATGCCATTTAGTTCGCGGATGCTAGAGTACGCTCTATACGTACGGAACTCTCACAACCGTACAAACCTACGCCAATTTCTGAAGGAATATTCTGAAACAATTGCAGCAAAGTATCCTTATTTTAACAGAACTGGTGGGGCAGATCATTTTCTTGTTGCTTGTCATGACTGGGCTCCATATGAAACAAGGCACCACATGGAACTCTGCATCAAGGCGCTTTGCAATGCTGATCTAACTTCTGGCTTCAAAATAGGAAGGGATGTGTCTCTTCCAGAAACATATGTTCGTTCAGCAAGAAATCCCCTTAGAGATCTTGGAGGCAAACCTCCTTCTCGGAGGGAGATTCTTGCCTTTTATGCTGGAAATATGCATGGCTACTTACGTCCAATTCTGCTGGAGCACTGGAAGGACAAAGACCCCGATATGAAGATCTTTGGTCCAATGCCTCCTGGTGTTGCAAGCAAAATGAATTACATCCACCACATGCAGGACAGCAAATACTGTATATGCCCCAAGGGTTTCGAGGTCAACAGCCCGCGAGTGGTTGAAGCAATATTTTATGAGTGCGTACCTGTGATCGATCTAGATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

580

Amino Acids

65.78

Weight (kDa)

9.38

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 329 - 575 4.4e-48 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 643
AccB1I GGYRCC 1 cut(s) 1335
AccI GTMKAC 1 cut(s) 802
AccII CGCG 2 cut(s) 1162, 1684
AciI CCGC 3 cut(s) 811, 1162, 1682
AclWI GGATC 3 cut(s) 914, 1115, 1128
AcsI RAATTY 3 cut(s) 574, 596, 643
AcuI CTGAAG 3 cut(s) 231, 1050, 1247
AfaI GTAC 7 cut(s) 78, 295, 858, 1175, 1188, 1207, 1716
AfeI AGCGCT 1 cut(s) 1106
AfiI CCNNNNNNNGG 4 cut(s) 51, 690, 1633, 1687
AgsI TTSAA 9 cut(s) 17, 255, 371, 567, 579, 688, 708, 1393, 1694
AhlI ACTAGT 1 cut(s) 805
AjnI CCWGG 2 cut(s) 864, 1594
AluBI AGCT 2 cut(s) 28, 878
AluI AGCT 2 cut(s) 28, 878
Alw21I GWGCWC 2 cut(s) 11, 1548
Alw26I GTCTC 3 cut(s) 144, 624, 1416
Alw44I GTGCAC 1 cut(s) 7
AlwI GGATC 3 cut(s) 914, 1115, 1128
AlwNI CAGNNNCTG 1 cut(s) 109
Aor51HI AGCGCT 1 cut(s) 1106
ApaLI GTGCAC 1 cut(s) 7
ApeKI GCWGC 2 cut(s) 878, 1250
ApoI RAATTY 3 cut(s) 574, 596, 643
ArsI GACNNNNNNTTYG 4 cut(s) 168, 200, 350, 382
Asp700I GAANNNNTTC 2 cut(s) 664, 952
AspLEI GCGC 2 cut(s) 1107, 1363
AspS9I GGNCC 2 cut(s) 849, 1583
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 825
AvaII GGWCC 2 cut(s) 849, 1583
BaeGI GKGCMC 1 cut(s) 11
BamHI GGATCC 1 cut(s) 1120
BanI GGYRCC 1 cut(s) 1335
BanII GRGCYC 1 cut(s) 1321
Bbv12I GWGCWC 2 cut(s) 11, 1548
BbvI GCAGC 2 cut(s) 865, 1262
BccI CCATC 4 cut(s) 211, 622, 840, 1068
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BciT130I CCWGG 2 cut(s) 866, 1596
BciVI GTATCC 2 cut(s) 154, 1269
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 3 cut(s) 144, 624, 1416
BcuI ACTAGT 1 cut(s) 805
BfaI CTAG 7 cut(s) 440, 501, 552, 806, 875, 1169, 1730
BfmI CTRYAG 1 cut(s) 636
BfoI RGCGCY 2 cut(s) 1108, 1364
BfuAI ACCTGC 1 cut(s) 643
BfuI GTATCC 2 cut(s) 154, 1269
BglII AGATCT 3 cut(s) 731, 1456, 1575
BisI GCNGC 2 cut(s) 879, 1251
BlsI GCNGC 2 cut(s) 880, 1252
Bme1390I CCNGG 3 cut(s) 46, 866, 1596
Bme18I GGWCC 2 cut(s) 849, 1583
BmgT120I GGNCC 2 cut(s) 849, 1583
BmiI GGNNCC 4 cut(s) 50, 1122, 1320, 1337
BmrFI CCNGG 3 cut(s) 46, 866, 1596
BmrI ACTGGG 1 cut(s) 1324
BmsI GCATC 2 cut(s) 1155, 1362
BmuI ACTGGG 1 cut(s) 1324
BpmI CTGGAG 1 cut(s) 1562
Bpu10I CCTNAGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 1034
BpuMI CCSGG 1 cut(s) 46
Bsa29I ATCGAT 1 cut(s) 1725
BsaAI YACGTR 2 cut(s) 860, 1186
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 1659
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 690, 1633, 1687
Bse1I ACTGG 3 cut(s) 1282, 1319, 1553
Bse3DI GCAATG 2 cut(s) 164, 1375
BseBI CCWGG 2 cut(s) 866, 1596
BseCI ATCGAT 1 cut(s) 1725
BseDI CCNNGG 1 cut(s) 1659
BseGI GGATG 5 cut(s) 319, 1079, 1170, 1411, 1620
BseLI CCNNNNNNNGG 4 cut(s) 51, 690, 1633, 1687
BseMI GCAATG 2 cut(s) 164, 1375
BseMII CTCAG 2 cut(s) 402, 780
BseNI ACTGG 3 cut(s) 1282, 1319, 1553
BseRI GAGGAG 2 cut(s) 291, 927
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 2 cut(s) 865, 1262
Bsh1236I CGCG 2 cut(s) 1162, 1684
BshNI GGYRCC 1 cut(s) 1335
BshVI ATCGAT 1 cut(s) 1725
BsiHKAI GWGCWC 2 cut(s) 11, 1548
BsiSI CCGG 2 cut(s) 46, 52
BsiWI CGTACG 1 cut(s) 1186
BslI CCNNNNNNNGG 4 cut(s) 51, 690, 1633, 1687
BsmAI GTCTC 3 cut(s) 144, 624, 1416
BsmBI CGTCTC 1 cut(s) 624
Bso31I GGTCTC 1 cut(s) 144
Bsp1286I GDGCHC 3 cut(s) 11, 1321, 1548
BspACI CCGC 3 cut(s) 811, 1162, 1682
BspCNI CTCAG 2 cut(s) 403, 781
BspDI ATCGAT 1 cut(s) 1725
BspFNI CGCG 2 cut(s) 1162, 1684
BspHI TCATGA 2 cut(s) 1080, 1309
BspLI GGNNCC 4 cut(s) 50, 1122, 1320, 1337
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 1 cut(s) 643
BspPI GGATC 3 cut(s) 914, 1115, 1128
BspQI GCTCTTC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 1335
BspTNI GGTCTC 1 cut(s) 144
BsrDI GCAATG 2 cut(s) 164, 1375
BsrI ACTGG 3 cut(s) 1282, 1319, 1553
BssECI CCNNGG 1 cut(s) 1659
BssNAI GTATAC 1 cut(s) 803
BssT1I CCWWGG 1 cut(s) 1659
Bst1107I GTATAC 1 cut(s) 803
Bst2UI CCWGG 2 cut(s) 866, 1596
Bst4CI ACNGT 6 cut(s) 81, 238, 478, 583, 1205, 1649
Bst6I CTCTTC 3 cut(s) 138, 746, 1419
BstBAI YACGTR 2 cut(s) 860, 1186
BstC8I GCNNGC 2 cut(s) 1606, 1682
BstDEI CTNAG 4 cut(s) 24, 411, 789, 1451
BstENI CCTNNNNNAGG 1 cut(s) 688
BstF5I GGATG 5 cut(s) 319, 1079, 1170, 1411, 1620
BstFNI CGCG 2 cut(s) 1162, 1684
BstH2I RGCGCY 2 cut(s) 1108, 1364
BstHHI GCGC 2 cut(s) 1107, 1363
BstMAI GTCTC 3 cut(s) 144, 624, 1416
BstMWI GCNNNNNNNGC 1 cut(s) 1502
BstNI CCWGG 2 cut(s) 866, 1596
BstNSI RCATGY 1 cut(s) 1633
BstSCI CCNGG 3 cut(s) 44, 864, 1594
BstSFI CTRYAG 1 cut(s) 636
BstSLI GKGCMC 1 cut(s) 11
BstSNI TACGTA 1 cut(s) 1186
BstUI CGCG 2 cut(s) 1162, 1684
BstV1I GCAGC 2 cut(s) 865, 1262
BstX2I RGATCY 4 cut(s) 731, 1120, 1456, 1575
BstYI RGATCY 4 cut(s) 731, 1120, 1456, 1575
BstZ17I GTATAC 1 cut(s) 803
Bsu15I ATCGAT 1 cut(s) 1725
BsuI GTATCC 2 cut(s) 154, 1269
BsuTUI ATCGAT 1 cut(s) 1725
BtsCI GGATG 5 cut(s) 319, 1079, 1170, 1411, 1620
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 3 cut(s) 645, 992, 1546
BveI ACCTGC 1 cut(s) 643
Cac8I GCNNGC 2 cut(s) 1606, 1682
CaiI CAGNNNCTG 1 cut(s) 109
CciI TCATGA 2 cut(s) 1080, 1309
CfoI GCGC 2 cut(s) 1107, 1363
Cfr13I GGNCC 2 cut(s) 849, 1583
ClaI ATCGAT 1 cut(s) 1725
CseI GACGC 2 cut(s) 172, 887
Csp6I GTAC 7 cut(s) 77, 294, 857, 1174, 1187, 1206, 1715
CviAII CATG 6 cut(s) 214, 1081, 1310, 1342, 1517, 1630
CviQI GTAC 7 cut(s) 77, 294, 857, 1174, 1187, 1206, 1715
DdeI CTNAG 4 cut(s) 24, 411, 789, 1451
DraI TTTAAA 1 cut(s) 964
Eam1104I CTCTTC 3 cut(s) 138, 746, 1419
EarI CTCTTC 3 cut(s) 138, 746, 1419
Eco105I TACGTA 1 cut(s) 1186
Eco130I CCWWGG 1 cut(s) 1659
Eco24I GRGCYC 1 cut(s) 1321
Eco31I GGTCTC 1 cut(s) 144
Eco32I GATATC 1 cut(s) 1735
Eco47I GGWCC 2 cut(s) 849, 1583
Eco47III AGCGCT 1 cut(s) 1106
Eco57I CTGAAG 3 cut(s) 231, 1050, 1247
EcoNI CCTNNNNNAGG 1 cut(s) 688
EcoRII CCWGG 2 cut(s) 864, 1594
EcoRV GATATC 1 cut(s) 1735
EcoT14I CCWWGG 1 cut(s) 1659
EcoT22I ATGCAT 1 cut(s) 1518
EcoT38I GRGCYC 1 cut(s) 1321
ErhI CCWWGG 1 cut(s) 1659
Esp3I CGTCTC 1 cut(s) 624
FaeI CATG 6 cut(s) 217, 1084, 1313, 1345, 1520, 1633
FalI AAGNNNNNCTT 2 cut(s) 1016, 1048
FatI CATG 6 cut(s) 213, 1080, 1309, 1341, 1516, 1629
FauI CCCGC 1 cut(s) 1689
FauNDI CATATG 2 cut(s) 1324, 1426
FblI GTMKAC 1 cut(s) 802
Fnu4HI GCNGC 2 cut(s) 879, 1251
FokI GGATG 5 cut(s) 326, 1086, 1177, 1418, 1607
FriOI GRGCYC 1 cut(s) 1321
Fsp4HI GCNGC 2 cut(s) 879, 1251
FspBI CTAG 7 cut(s) 440, 501, 552, 806, 875, 1169, 1730
GlaI GCGC 2 cut(s) 1106, 1362
GluI GCNGC 2 cut(s) 879, 1251
GsuI CTGGAG 1 cut(s) 1562
HaeII RGCGCY 2 cut(s) 1108, 1364
HapII CCGG 2 cut(s) 46, 52
HgaI GACGC 2 cut(s) 172, 887
HhaI GCGC 2 cut(s) 1107, 1363
Hin1II CATG 6 cut(s) 217, 1084, 1313, 1345, 1520, 1633
Hin6I GCGC 2 cut(s) 1105, 1361
HinP1I GCGC 2 cut(s) 1105, 1361
HincII GTYRAC 1 cut(s) 1675
HindII GTYRAC 1 cut(s) 1675
HinfI GANTC 7 cut(s) 41, 126, 251, 460, 796, 871, 1489
HpaII CCGG 2 cut(s) 46, 52
HphI GGTGA 1 cut(s) 825
Hpy166II GTNNAC 3 cut(s) 9, 803, 1675
Hpy188I TCNGA 9 cut(s) 250, 412, 544, 790, 1069, 1227, 1240, 1482, 1739
Hpy188III TCNNGA 7 cut(s) 464, 735, 923, 1081, 1310, 1418, 1730
Hpy8I GTNNAC 3 cut(s) 9, 803, 1675
HpyAV CCTTC 7 cut(s) 1064, 1087, 1111, 1222, 1395, 1485, 1546
HpyCH4III ACNGT 6 cut(s) 81, 238, 478, 583, 1205, 1649
HpyCH4IV ACGT 4 cut(s) 378, 859, 1185, 1528
HpyF10VI GCNNNNNNNGC 1 cut(s) 1502
HpyF3I CTNAG 4 cut(s) 24, 411, 789, 1451
HpySE526I ACGT 4 cut(s) 378, 859, 1185, 1528
Hsp92II CATG 6 cut(s) 217, 1084, 1313, 1345, 1520, 1633
HspAI GCGC 2 cut(s) 1105, 1361
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 4 cut(s) 48, 940, 1324, 1543
Lsp1109I GCAGC 2 cut(s) 865, 1262
LweI GCATC 2 cut(s) 1155, 1362
MaeI CTAG 7 cut(s) 440, 501, 552, 806, 875, 1169, 1730
MaeII ACGT 4 cut(s) 378, 859, 1185, 1528
MaeIII GTNAC 8 cut(s) 85, 111, 374, 472, 531, 583, 860, 885
MfeI CAATTG 2 cut(s) 255, 1245
MflI RGATCY 4 cut(s) 731, 1120, 1456, 1575
MhlI GDGCHC 3 cut(s) 11, 1321, 1548
Mph1103I ATGCAT 1 cut(s) 1518
MroXI GAANNNNTTC 2 cut(s) 664, 952
MseI TTAA 4 cut(s) 335, 456, 963, 1269
MspI CCGG 2 cut(s) 46, 52
MspR9I CCNGG 3 cut(s) 46, 866, 1596
MunI CAATTG 2 cut(s) 255, 1245
MvaI CCWGG 2 cut(s) 866, 1596
MvnI CGCG 2 cut(s) 1162, 1684
MwoI GCNNNNNNNGC 1 cut(s) 1502
NciI CCSGG 1 cut(s) 46
NdeI CATATG 2 cut(s) 1324, 1426
NlaIII CATG 6 cut(s) 217, 1084, 1313, 1345, 1520, 1633
NlaIV GGNNCC 4 cut(s) 50, 1122, 1320, 1337
NmuCI GTSAC 4 cut(s) 374, 583, 860, 885
NsiI ATGCAT 1 cut(s) 1518
NspI RCATGY 1 cut(s) 1633
PagI TCATGA 2 cut(s) 1080, 1309
PciSI GCTCTTC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 1182
PdmI GAANNNNTTC 2 cut(s) 664, 952
PfeI GAWTC 7 cut(s) 41, 126, 251, 460, 796, 871, 1489
Pfl23II CGTACG 1 cut(s) 1186
PfoI TCCNGGA 1 cut(s) 44
PkrI GCNGC 2 cut(s) 880, 1252
Ppu21I YACGTR 2 cut(s) 860, 1186
Psp6I CCWGG 2 cut(s) 864, 1594
PspGI CCWGG 2 cut(s) 864, 1594
PspLI CGTACG 1 cut(s) 1186
PspN4I GGNNCC 4 cut(s) 50, 1122, 1320, 1337
PspPI GGNCC 2 cut(s) 849, 1583
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 109
PsuI RGATCY 4 cut(s) 731, 1120, 1456, 1575
RsaI GTAC 7 cut(s) 78, 295, 858, 1175, 1188, 1207, 1716
RsaNI GTAC 7 cut(s) 77, 294, 857, 1174, 1187, 1206, 1715
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 4 cut(s) 335, 456, 963, 1269
SatI GCNGC 2 cut(s) 879, 1251
Sau96I GGNCC 2 cut(s) 849, 1583
ScrFI CCNGG 3 cut(s) 46, 866, 1596
SduI GDGCHC 3 cut(s) 11, 1321, 1548
SfaNI GCATC 2 cut(s) 1155, 1362
SfcI CTRYAG 1 cut(s) 636
SinI GGWCC 2 cut(s) 849, 1583
SmlI CTYRAG 1 cut(s) 1049
SmoI CTYRAG 1 cut(s) 1049
SnaBI TACGTA 1 cut(s) 1186
SpeI ACTAGT 1 cut(s) 805
SsiI CCGC 3 cut(s) 811, 1162, 1682
SspI AATATT 2 cut(s) 1235, 1701
SspMI CTAG 7 cut(s) 440, 501, 552, 806, 875, 1169, 1730
StyD4I CCNGG 3 cut(s) 44, 864, 1594
StyI CCWWGG 1 cut(s) 1659
TaaI ACNGT 6 cut(s) 81, 238, 478, 583, 1205, 1649
TaiI ACGT 4 cut(s) 381, 862, 1188, 1531
TaqI TCGA 6 cut(s) 385, 463, 773, 894, 1668, 1725
TaqII GACCGA 1 cut(s) 126
TfiI GAWTC 7 cut(s) 41, 126, 251, 460, 796, 871, 1489
Tru1I TTAA 4 cut(s) 335, 456, 963, 1269
Tru9I TTAA 4 cut(s) 335, 456, 963, 1269
TscAI CASTG 3 cut(s) 645, 999, 1553
TseFI GTSAC 4 cut(s) 374, 583, 860, 885
TseI GCWGC 2 cut(s) 878, 1250
Tsp45I GTSAC 4 cut(s) 374, 583, 860, 885
TspGWI ACGGA 3 cut(s) 396, 946, 1204
TspRI CASTG 3 cut(s) 645, 999, 1553
VneI GTGCAC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 849, 1583
XagI CCTNNNNNAGG 1 cut(s) 688
XapI RAATTY 3 cut(s) 574, 596, 643
XbaI TCTAGA 1 cut(s) 1729
XceI RCATGY 1 cut(s) 1633
XcmI CCANNNNNNNNNTGG 2 cut(s) 214, 843
XmiI GTMKAC 1 cut(s) 802
XmnI GAANNNNTTC 2 cut(s) 664, 952
XspI CTAG 7 cut(s) 440, 501, 552, 806, 875, 1169, 1730
Zsp2I ATGCAT 1 cut(s) 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.