Rh2BG062400

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006455
Physical Location & Seq
Forward (+)
4699775 .. 4700419
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG062400.1

Sequence Viewer

Length: 645 bp
ATGGAACGTTGCATCAAAGCCCTCTGCAATGCTGATGTTACTCAAGGCTTTAAAATAGGAAGGGATGTCTCTCTTCCAGAAACATATGTTCGTTCCGCAAGAAATCCTCTTAGAGATCTTGGAGGCAAACCTGCTTCCGAGAGGCAGGTTCTTGCCTTCTATGCTGGAAATATGCATGGCTATCTCCGTCCAATATTGCTGAAGTACTGGAAGGACAAGGACCCAGACATGAAAATCTTTGGTCCAATGCCTCCTGGAGTTGCAAGCAAAATGAACTACATCGAGCATATGAAGAGCAGCAAATACTGTATCTGCCCCAAAGGTTACGAGGTCAACAGTCCCCGGGTGGTTGAAGCAATATTCTATGAGTGCATTCCGGTGATCATATCCGACAACTTTGTGCCGCCATTTTTCGAGGTATTGAATTGGGGGGCTTTCTCTTTAATCCTTGCAGAGAAAGACATTCCAAACTTGAAAGACATACTACTTTCCATACCGGATGAGAGGTACCTTCAGATGCAACTAGCAGTCAAGAAAGCTCAGAAACATTTTCTGTGGCATCCTAAACCCCTCAAGTATGATCTCTTCCACATGACACTTCATTCAATTTGGTACAATAGAGTTTTTCAGATCAAACCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

214

Amino Acids

24.84

Weight (kDa)

9.26

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 9 - 163 2.1e-34 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 136, 139
Acc65I GGTACC 1 cut(s) 507
AccB1I GGYRCC 1 cut(s) 507
AciI CCGC 2 cut(s) 96, 404
AclI AACGTT 1 cut(s) 7
AcuI CTGAAG 2 cut(s) 221, 497
AfaI GTAC 3 cut(s) 206, 509, 614
AgsI TTSAA 4 cut(s) 353, 424, 475, 606
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 1 cut(s) 539
AluI AGCT 1 cut(s) 539
Alw26I GTCTC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 297
Asp718I GGTACC 1 cut(s) 507
AspS9I GGNCC 2 cut(s) 220, 242
AsuC2I CCSGG 2 cut(s) 343, 344
AsuHPI GGTGA 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 2 cut(s) 220, 242
BanI GGYRCC 1 cut(s) 507
BarI GAAGNNNNNNTAC 2 cut(s) 569, 601
BbvI GCAGC 1 cut(s) 309
BciT130I CCWGG 1 cut(s) 255
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 2 cut(s) 343, 344
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 524
BfuAI ACCTGC 2 cut(s) 136, 139
BglII AGATCT 1 cut(s) 115
BisI GCNGC 2 cut(s) 298, 404
BlsI GCNGC 2 cut(s) 299, 405
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 3 cut(s) 255, 343, 344
Bme18I GGWCC 2 cut(s) 220, 242
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 220, 242
BmiI GGNNCC 2 cut(s) 222, 509
BmrFI CCNGG 3 cut(s) 255, 343, 344
BmsI GCATC 3 cut(s) 21, 507, 568
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 27, 557
BpuMI CCSGG 2 cut(s) 343, 344
BsaJI CCNNGG 2 cut(s) 341, 342
BsaWI WCCGGW 2 cut(s) 376, 496
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 341, 342
BseGI GGATG 3 cut(s) 70, 505, 559
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 554
BseNI ACTGG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 309
BshNI GGYRCC 1 cut(s) 507
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 3 cut(s) 343, 377, 497
BslFI GGGAC 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 324
BsmI GAATGC 1 cut(s) 372
BsoBI CYCGRG 1 cut(s) 342
Bsp143I GATC 4 cut(s) 115, 381, 580, 630
BspACI CCGC 2 cut(s) 96, 404
BspCNI CTCAG 1 cut(s) 553
BspLI GGNNCC 2 cut(s) 222, 509
BspMI ACCTGC 2 cut(s) 136, 139
BspQI GCTCTTC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 507
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 341, 342
BssMI GATC 4 cut(s) 115, 381, 580, 630
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 308, 338
Bst6I CTCTTC 3 cut(s) 78, 287, 590
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 110, 540
BstF5I GGATG 3 cut(s) 70, 505, 559
BstKTI GATC 4 cut(s) 118, 384, 583, 633
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 4 cut(s) 115, 381, 580, 630
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 3 cut(s) 253, 341, 342
BstV1I GCAGC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtsCI GGATG 3 cut(s) 70, 505, 559
BveI ACCTGC 2 cut(s) 136, 139
Cac8I GCNNGC 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 220, 242
Cfr9I CCCGGG 1 cut(s) 342
Csp6I GTAC 3 cut(s) 205, 508, 613
CviAII CATG 3 cut(s) 176, 229, 592
CviJI RGCY 5 cut(s) 20, 48, 180, 434, 539
CviKI_1 RGCY 5 cut(s) 20, 48, 180, 434, 539
CviQI GTAC 3 cut(s) 205, 508, 613
DdeI CTNAG 2 cut(s) 110, 540
DpnI GATC 4 cut(s) 117, 383, 582, 632
DpnII GATC 4 cut(s) 115, 381, 580, 630
DraI TTTAAA 1 cut(s) 52
Eam1104I CTCTTC 3 cut(s) 78, 287, 590
EarI CTCTTC 3 cut(s) 78, 287, 590
Eco47I GGWCC 2 cut(s) 220, 242
Eco57I CTGAAG 2 cut(s) 221, 497
Eco88I CYCGRG 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 253
EcoT22I ATGCAT 1 cut(s) 177
FaeI CATG 3 cut(s) 179, 232, 595
FaqI GGGAC 1 cut(s) 324
FatI CATG 3 cut(s) 175, 228, 591
FauNDI CATATG 2 cut(s) 85, 288
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 2 cut(s) 298, 404
FokI GGATG 3 cut(s) 77, 512, 546
Fsp4HI GCNGC 2 cut(s) 298, 404
FspBI CTAG 1 cut(s) 524
GluI GCNGC 2 cut(s) 298, 404
GsuI CTGGAG 1 cut(s) 276
HapII CCGG 3 cut(s) 343, 377, 497
Hin1II CATG 3 cut(s) 179, 232, 595
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HpaII CCGG 3 cut(s) 343, 377, 497
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 5 cut(s) 139, 391, 516, 543, 630
Hpy188III TCNNGA 2 cut(s) 77, 532
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 4 cut(s) 54, 166, 205, 521
HpyCH4III ACNGT 2 cut(s) 308, 338
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 7 cut(s) 12, 27, 175, 263, 372, 452, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 110, 540
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 3 cut(s) 179, 232, 595
KpnI GGTACC 1 cut(s) 511
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 4 cut(s) 115, 381, 580, 630
LguI GCTCTTC 1 cut(s) 287
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 3 cut(s) 21, 507, 568
MaeI CTAG 1 cut(s) 524
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 2 cut(s) 37, 323
MalI GATC 4 cut(s) 117, 383, 582, 632
MboI GATC 4 cut(s) 115, 381, 580, 630
MboII GAAGA 3 cut(s) 65, 304, 577
MflI RGATCY 1 cut(s) 115
MluCI AATT 2 cut(s) 424, 606
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 9 cut(s) 32, 116, 117, 135, 261, 322, 409, 498, 581
Mph1103I ATGCAT 1 cut(s) 177
MseI TTAA 2 cut(s) 51, 443
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 3 cut(s) 343, 377, 497
MspR9I CCNGG 3 cut(s) 255, 343, 344
Mva1269I GAATGC 1 cut(s) 372
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 2 cut(s) 343, 344
NdeI CATATG 2 cut(s) 85, 288
NdeII GATC 4 cut(s) 115, 381, 580, 630
NlaIII CATG 3 cut(s) 179, 232, 595
NlaIV GGNNCC 2 cut(s) 222, 509
NsiI ATGCAT 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 287
PctI GAATGC 1 cut(s) 372
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 2 cut(s) 299, 405
PpuMI RGGWCCY 1 cut(s) 220
Psp1406I AACGTT 1 cut(s) 7
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 222, 509
PspPI GGNCC 2 cut(s) 220, 242
PspPPI RGGWCCY 1 cut(s) 220
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 3 cut(s) 206, 509, 614
RsaNI GTAC 3 cut(s) 205, 508, 613
RseI CAYNNNNRTG 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 51, 443
SatI GCNGC 2 cut(s) 298, 404
Sau3AI GATC 4 cut(s) 115, 381, 580, 630
Sau96I GGNCC 2 cut(s) 220, 242
ScaI AGTACT 1 cut(s) 206
ScrFI CCNGG 3 cut(s) 255, 343, 344
SetI ASST 9 cut(s) 10, 133, 150, 325, 333, 420, 509, 513, 541
SfaNI GCATC 3 cut(s) 21, 507, 568
SinI GGWCC 2 cut(s) 220, 242
SmaI CCCGGG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 42, 572
SmoI CTYRAG 2 cut(s) 42, 572
Sse9I AATT 2 cut(s) 424, 606
SsiI CCGC 2 cut(s) 96, 404
SspI AATATT 2 cut(s) 195, 360
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 3 cut(s) 253, 341, 342
TaaI ACNGT 2 cut(s) 308, 338
TaiI ACGT 1 cut(s) 10
TaqI TCGA 2 cut(s) 282, 414
TasI AATT 2 cut(s) 424, 606
TatI WGTACW 1 cut(s) 204
TauI GCSGC 1 cut(s) 406
Tru1I TTAA 2 cut(s) 51, 443
Tru9I TTAA 2 cut(s) 51, 443
TseI GCWGC 1 cut(s) 297
TspDTI ATGAA 4 cut(s) 245, 287, 305, 590
TspGWI ACGGA 1 cut(s) 176
TspMI CCCGGG 1 cut(s) 342
VpaK11BI GGWCC 2 cut(s) 220, 242
XmaI CCCGGG 1 cut(s) 342
XspI CTAG 1 cut(s) 524
ZrmI AGTACT 1 cut(s) 206
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.