Rh2DG062500

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006455
Physical Location & Seq
Forward (+)
4579484 .. 4583152
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG062500.1

Sequence Viewer

Length: 1437 bp
ATGGACTGCTCTTTTCAATTTCTGAAGCTATTGCATATAGAAACCCAGAGGCGGCTTTTAGTTCTTGGGGTAGTAGCTGTTACGTATTTATTGTTTCAGTGGCTGTTGCTTCCGTATGAAAATGCTCTCCGGTCTCTATTGCCTCAAAGTCAGGTTCTGGATCATGTCACAGGTAGCTCCCTCGCAATCCATTCTTCTGCCAAGTCTGTGATGGTTCGCAATCCTCTTACAGTTAATTCTTCAGATTTGATCGATGCTCCTAGATTTGGTGGGGTGGAGAGGTATGCTGATAACTCTAGTCTTGGAGGAGAAATTGTGCATGAAAGTGAACCAAATGAAGAGGAAGGATTTAAGGAAATTGATTCAGTATTGGAAGAGAAAGGGATAGATAATGCTTTTGAACATGCTGTAGATAGAAATGTAGATGAAAATTCTTCATCTGGGAATGGTGTAGATATTGTTGCAAGTCTAGCCATGGTCAGCATTAGCAATGAAGAAAATGGTTCTAATCTAGTTAAGGCCGATGAAGCTAGCGATGACTTCCCGGAGCCAACTGTGTTATCAAAAGATGAAGTTTCTACAGAGAATACTCTGGAAGAAAATACAACTGAGGCAGCAAAGAATTCTGAGGGCGTCAAAACTATATTTCCATCCTCTCAACTCATTTTACCCGCAACAGCTTCATTCATAAACCGGACCAATGTAAGTTACTTGGTGTTCAATGCACGCTCTTCTGTTGGTTCTGCTTCCCTGAAAAGTGATGTTGTGACTATAAAAAATGGTTCTTTGACAATGACAAGTCCTGGGAAGAAGATGATGAAGTGCAACATGCCACCAAAATCAATAACATCAATACATGAGATGAACCTTACACTGGTGCGGCACCATGCTAAGCCACGTGCATTGAGACCACGGTGGTCCTCTGTGCGTGACCAGGATATTCTAGCTGTGAAGGCACAGATCCAGCATCCTCCCATGGTCAAAAATGATCGAGAACTTTATGCCCCTCTCTTCCGCAATGTTTCAATGTTTAAAAGGAGTTATGAACTTATGGAACGCACATTGAAAGTCTATATCTACAAGGAGGGAAAAAAACCCATCTTTCATCAACCAATACTAAAGGGGTTATATGCTTCTGAAGGATGGTTCATGAAACTGATGGAGGGACATAAGCGTTTTGTTGTGAAGGATCCACGAAAGGCTCATCTGTTTTATATGCCATTCAGTTCAAGGATGCTAGAGTTCACTTTGTATGTTCGCAACTCTCACAACCGGACAAACCTACGCCAATATTTGAAAGCGTATTCTGAAACAATTGCAGCAAAGTATCCTTACTGGAACAGAACTGGTGGAGCAGATCATTTTCTTGTTGCCTGCCATGACTGGGTATGCTCTCTATGCATCTTTCCACTTTCTTGCTTTGGCCTGGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

478

Amino Acids

53.87

Weight (kDa)

6.75

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 352 - 464 1e-22 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 882
AciI CCGC 4 cut(s) 52, 672, 880, 1015
AclWI GGATC 4 cut(s) 168, 955, 1184, 1197
AcsI RAATTY 2 cut(s) 430, 622
AcuI CTGAAG 3 cut(s) 44, 225, 1158
AcvI CACGTG 1 cut(s) 899
AcyI GRCGYC 1 cut(s) 633
AfiI CCNNNNNNNGG 4 cut(s) 51, 266, 874, 1384
AgsI TTSAA 7 cut(s) 17, 401, 721, 1026, 1066, 1230, 1297
AjnI CCWGG 3 cut(s) 802, 933, 1425
AluBI AGCT 6 cut(s) 28, 77, 177, 530, 680, 947
AluI AGCT 6 cut(s) 28, 77, 177, 530, 680, 947
Alw26I GTCTC 2 cut(s) 138, 901
AlwI GGATC 4 cut(s) 168, 955, 1184, 1197
AlwNI CAGNNNCTG 2 cut(s) 103, 157
AoxI GGCC 2 cut(s) 519, 1423
ApeKI GCWGC 2 cut(s) 614, 1319
ApoI RAATTY 2 cut(s) 430, 622
AspS9I GGNCC 2 cut(s) 696, 918
AsuC2I CCSGG 1 cut(s) 545
AsuNHI GCTAGC 1 cut(s) 530
AvaII GGWCC 2 cut(s) 696, 918
BamHI GGATCC 1 cut(s) 1189
BanI GGYRCC 1 cut(s) 882
BbrPI CACGTG 1 cut(s) 899
BbvI GCAGC 2 cut(s) 626, 1331
BccI CCATC 5 cut(s) 205, 658, 1106, 1137, 1153
BciT130I CCWGG 3 cut(s) 804, 935, 1427
BciVI GTATCC 1 cut(s) 1338
BcnI CCSGG 1 cut(s) 545
BcoDI GTCTC 2 cut(s) 138, 901
BfaI CTAG 7 cut(s) 261, 297, 470, 512, 531, 944, 1238
BfmI CTRYAG 2 cut(s) 408, 579
BfuI GTATCC 1 cut(s) 1338
BisI GCNGC 4 cut(s) 53, 615, 881, 1320
BlpI GCTNAGC 1 cut(s) 891
BlsI GCNGC 4 cut(s) 54, 616, 882, 1321
Bme1390I CCNGG 4 cut(s) 545, 804, 935, 1427
Bme18I GGWCC 2 cut(s) 696, 918
BmgT120I GGNCC 2 cut(s) 696, 918
BmiI GGNNCC 3 cut(s) 549, 884, 1191
BmrFI CCNGG 4 cut(s) 545, 804, 935, 1427
BmrI ACTGGG 1 cut(s) 1393
BmsI GCATC 4 cut(s) 244, 976, 1224, 1410
BmtI GCTAGC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 1393
Bpu1102I GCTNAGC 1 cut(s) 891
BpuMI CCSGG 1 cut(s) 545
Bsa29I ATCGAT 1 cut(s) 252
BsaAI YACGTR 2 cut(s) 84, 899
BsaHI GRCGYC 1 cut(s) 633
BsaI GGTCTC 2 cut(s) 138, 901
BsaJI CCNNGG 4 cut(s) 474, 803, 911, 975
BsaWI WCCGGW 3 cut(s) 129, 693, 1272
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 266, 874, 1384
Bse1I ACTGG 4 cut(s) 879, 1340, 1351, 1388
Bse3DI GCAATG 2 cut(s) 496, 1024
BseBI CCWGG 3 cut(s) 804, 935, 1427
BseCI ATCGAT 1 cut(s) 252
BseDI CCNNGG 4 cut(s) 474, 803, 911, 975
BseGI GGATG 5 cut(s) 650, 967, 1148, 1239, 1435
BseLI CCNNNNNNNGG 4 cut(s) 51, 266, 874, 1384
BseMI GCAATG 2 cut(s) 496, 1024
BseMII CTCAG 2 cut(s) 600, 618
BseNI ACTGG 4 cut(s) 879, 1340, 1351, 1388
BseRI GAGGAG 1 cut(s) 321
BseXI GCAGC 2 cut(s) 626, 1331
BshFI GGCC 2 cut(s) 521, 1425
BshNI GGYRCC 1 cut(s) 882
BshVI ATCGAT 1 cut(s) 252
BsiSI CCGG 4 cut(s) 130, 545, 694, 1273
BslFI GGGAC 1 cut(s) 1179
BslI CCNNNNNNNGG 4 cut(s) 51, 266, 874, 1384
BsmAI GTCTC 2 cut(s) 138, 901
BsmFI GGGAC 1 cut(s) 1179
BsnI GGCC 2 cut(s) 521, 1425
Bso31I GGTCTC 2 cut(s) 138, 901
Bsp143I GATC 6 cut(s) 160, 249, 960, 988, 1189, 1357
Bsp1720I GCTNAGC 1 cut(s) 891
Bsp19I CCATGG 2 cut(s) 474, 975
BspACI CCGC 4 cut(s) 52, 672, 880, 1015
BspANI GGCC 2 cut(s) 521, 1425
BspCNI CTCAG 2 cut(s) 601, 619
BspDI ATCGAT 1 cut(s) 252
BspHI TCATGA 1 cut(s) 1149
BspLI GGNNCC 3 cut(s) 549, 884, 1191
BspOI GCTAGC 1 cut(s) 534
BspPI GGATC 4 cut(s) 168, 955, 1184, 1197
BspQI GCTCTTC 1 cut(s) 736
BspT107I GGYRCC 1 cut(s) 882
BspTNI GGTCTC 2 cut(s) 138, 901
BsrDI GCAATG 2 cut(s) 496, 1024
BsrI ACTGG 4 cut(s) 879, 1340, 1351, 1388
BssECI CCNNGG 4 cut(s) 474, 803, 911, 975
BssMI GATC 6 cut(s) 160, 249, 960, 988, 1189, 1357
BssNI GRCGYC 1 cut(s) 633
BssT1I CCWWGG 2 cut(s) 474, 975
Bst2UI CCWGG 3 cut(s) 804, 935, 1427
Bst4CI ACNGT 3 cut(s) 232, 556, 915
Bst6I CTCTTC 4 cut(s) 333, 369, 736, 1016
BstACI GRCGYC 1 cut(s) 633
BstBAI YACGTR 2 cut(s) 84, 899
BstC8I GCNNGC 3 cut(s) 532, 727, 1375
BstDEI CTNAG 3 cut(s) 609, 627, 891
BstDSI CCRYGG 3 cut(s) 474, 911, 975
BstF5I GGATG 5 cut(s) 650, 967, 1148, 1239, 1435
BstKTI GATC 6 cut(s) 163, 252, 963, 991, 1192, 1360
BstMAI GTCTC 2 cut(s) 138, 901
BstMBI GATC 6 cut(s) 160, 249, 960, 988, 1189, 1357
BstMWI GCNNNNNNNGC 4 cut(s) 470, 527, 953, 1398
BstNI CCWGG 3 cut(s) 804, 935, 1427
BstNSI RCATGY 2 cut(s) 407, 832
BstSCI CCNGG 4 cut(s) 543, 802, 933, 1425
BstSFI CTRYAG 2 cut(s) 408, 579
BstSNI TACGTA 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 626, 1331
BstX2I RGATCY 2 cut(s) 960, 1189
BstYI RGATCY 2 cut(s) 960, 1189
Bsu15I ATCGAT 1 cut(s) 252
BsuI GTATCC 1 cut(s) 1338
BsuRI GGCC 2 cut(s) 521, 1425
BsuTUI ATCGAT 1 cut(s) 252
BtgI CCRYGG 3 cut(s) 474, 911, 975
BtgZI GCGATG 1 cut(s) 549
BtsCI GGATG 5 cut(s) 650, 967, 1148, 1239, 1435
BtsIMutI CAGTG 2 cut(s) 104, 872
Cac8I GCNNGC 3 cut(s) 532, 727, 1375
CaiI CAGNNNCTG 2 cut(s) 103, 157
CciI TCATGA 1 cut(s) 1149
Cfr13I GGNCC 2 cut(s) 696, 918
ClaI ATCGAT 1 cut(s) 252
CseI GACGC 1 cut(s) 622
CspCI CAANNNNNGTGG 2 cut(s) 885, 920
DdeI CTNAG 3 cut(s) 609, 627, 891
DpnI GATC 6 cut(s) 162, 251, 962, 990, 1191, 1359
DpnII GATC 6 cut(s) 160, 249, 960, 988, 1189, 1357
DraI TTTAAA 1 cut(s) 1033
Eam1104I CTCTTC 4 cut(s) 333, 369, 736, 1016
EarI CTCTTC 4 cut(s) 333, 369, 736, 1016
Eco105I TACGTA 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 474, 975
Eco31I GGTCTC 2 cut(s) 138, 901
Eco47I GGWCC 2 cut(s) 696, 918
Eco57I CTGAAG 3 cut(s) 44, 225, 1158
Eco72I CACGTG 1 cut(s) 899
EcoRI GAATTC 1 cut(s) 622
EcoRII CCWGG 3 cut(s) 802, 933, 1425
EcoT14I CCWWGG 2 cut(s) 474, 975
EcoT22I ATGCAT 1 cut(s) 1403
ErhI CCWWGG 2 cut(s) 474, 975
FaqI GGGAC 1 cut(s) 1179
FauI CCCGC 1 cut(s) 679
Fnu4HI GCNGC 4 cut(s) 53, 615, 881, 1320
FokI GGATG 4 cut(s) 637, 954, 1155, 1246
Fsp4HI GCNGC 4 cut(s) 53, 615, 881, 1320
FspBI CTAG 7 cut(s) 261, 297, 470, 512, 531, 944, 1238
GluI GCNGC 4 cut(s) 53, 615, 881, 1320
HaeIII GGCC 2 cut(s) 521, 1425
HapII CCGG 4 cut(s) 130, 545, 694, 1273
HgaI GACGC 1 cut(s) 622
Hin1I GRCGYC 1 cut(s) 633
HinfI GANTC 1 cut(s) 362
HpaII CCGG 4 cut(s) 130, 545, 694, 1273
Hpy166II GTNNAC 2 cut(s) 329, 1245
Hpy188I TCNGA 5 cut(s) 24, 244, 628, 1138, 1309
Hpy188III TCNNGA 4 cut(s) 158, 593, 992, 1150
Hpy8I GTNNAC 2 cut(s) 329, 1245
HpyAV CCTTC 4 cut(s) 338, 946, 1133, 1180
HpyCH4III ACNGT 3 cut(s) 232, 556, 915
HpyCH4IV ACGT 2 cut(s) 83, 898
HpyCH4V TGCA 8 cut(s) 34, 319, 464, 725, 825, 902, 1319, 1401
HpyF10VI GCNNNNNNNGC 4 cut(s) 470, 527, 953, 1398
HpyF3I CTNAG 3 cut(s) 609, 627, 891
HpySE526I ACGT 2 cut(s) 83, 898
Hsp92I GRCGYC 1 cut(s) 633
Kzo9I GATC 6 cut(s) 160, 249, 960, 988, 1189, 1357
LguI GCTCTTC 1 cut(s) 736
LmnI GCTCC 4 cut(s) 182, 262, 547, 1352
Lsp1109I GCAGC 2 cut(s) 626, 1331
LweI GCATC 4 cut(s) 244, 976, 1224, 1410
MaeI CTAG 7 cut(s) 261, 297, 470, 512, 531, 944, 1238
MaeII ACGT 2 cut(s) 83, 898
MaeIII GTNAC 5 cut(s) 79, 166, 707, 766, 929
MalI GATC 6 cut(s) 162, 251, 962, 990, 1191, 1359
MboI GATC 6 cut(s) 160, 249, 960, 988, 1189, 1357
MfeI CAATTG 1 cut(s) 1314
MflI RGATCY 2 cut(s) 960, 1189
MluCI AATT 7 cut(s) 17, 235, 312, 357, 430, 622, 1314
Mph1103I ATGCAT 1 cut(s) 1403
MseI TTAA 4 cut(s) 234, 351, 516, 1032
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 4 cut(s) 130, 545, 694, 1273
MspR9I CCNGG 4 cut(s) 545, 804, 935, 1427
MunI CAATTG 1 cut(s) 1314
MvaI CCWGG 3 cut(s) 804, 935, 1427
MwoI GCNNNNNNNGC 4 cut(s) 470, 527, 953, 1398
NciI CCSGG 1 cut(s) 545
NcoI CCATGG 2 cut(s) 474, 975
NdeII GATC 6 cut(s) 160, 249, 960, 988, 1189, 1357
NheI GCTAGC 1 cut(s) 530
NlaIV GGNNCC 3 cut(s) 549, 884, 1191
NmuCI GTSAC 3 cut(s) 166, 766, 929
NsiI ATGCAT 1 cut(s) 1403
NspI RCATGY 2 cut(s) 407, 832
PagI TCATGA 1 cut(s) 1149
PciSI GCTCTTC 1 cut(s) 736
PfeI GAWTC 1 cut(s) 362
PfoI TCCNGGA 1 cut(s) 543
PkrI GCNGC 4 cut(s) 54, 616, 882, 1321
PmaCI CACGTG 1 cut(s) 899
PmlI CACGTG 1 cut(s) 899
Ppu21I YACGTR 2 cut(s) 84, 899
Psp6I CCWGG 3 cut(s) 802, 933, 1425
PspCI CACGTG 1 cut(s) 899
PspGI CCWGG 3 cut(s) 802, 933, 1425
PspN4I GGNNCC 3 cut(s) 549, 884, 1191
PspPI GGNCC 2 cut(s) 696, 918
PstNI CAGNNNCTG 2 cut(s) 103, 157
PsuI RGATCY 2 cut(s) 960, 1189
RseI CAYNNNNRTG 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 736
SaqAI TTAA 4 cut(s) 234, 351, 516, 1032
SatI GCNGC 4 cut(s) 53, 615, 881, 1320
Sau3AI GATC 6 cut(s) 160, 249, 960, 988, 1189, 1357
Sau96I GGNCC 2 cut(s) 696, 918
ScrFI CCNGG 4 cut(s) 545, 804, 935, 1427
SfaNI GCATC 4 cut(s) 244, 976, 1224, 1410
SfcI CTRYAG 2 cut(s) 408, 579
SinI GGWCC 2 cut(s) 696, 918
SmiMI CAYNNNNRTG 1 cut(s) 324
SnaBI TACGTA 1 cut(s) 84
Sse9I AATT 7 cut(s) 17, 235, 312, 357, 430, 622, 1314
SsiI CCGC 4 cut(s) 52, 672, 880, 1015
SspI AATATT 1 cut(s) 1292
SspMI CTAG 7 cut(s) 261, 297, 470, 512, 531, 944, 1238
StyD4I CCNGG 4 cut(s) 543, 802, 933, 1425
StyI CCWWGG 2 cut(s) 474, 975
TaaI ACNGT 3 cut(s) 232, 556, 915
TaiI ACGT 2 cut(s) 86, 901
TaqI TCGA 2 cut(s) 252, 991
TasI AATT 7 cut(s) 17, 235, 312, 357, 430, 622, 1314
TauI GCSGC 2 cut(s) 55, 883
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 4 cut(s) 234, 351, 516, 1032
Tru9I TTAA 4 cut(s) 234, 351, 516, 1032
TscAI CASTG 2 cut(s) 104, 879
TseFI GTSAC 3 cut(s) 166, 766, 929
TseI GCWGC 2 cut(s) 614, 1319
Tsp45I GTSAC 3 cut(s) 166, 766, 929
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 2 cut(s) 104, 879
VpaK11BI GGWCC 2 cut(s) 696, 918
XapI RAATTY 2 cut(s) 430, 622
XceI RCATGY 2 cut(s) 407, 832
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XspI CTAG 7 cut(s) 261, 297, 470, 512, 531, 944, 1238
Zsp2I ATGCAT 1 cut(s) 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.