Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012558

Physical Location & Seq

Genomic Coordinates Forward (+)

4858547 .. 4861915

Gene Structure 3369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016225

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGCCATTAACAGCCTATAATGATACCGTGATGAACACGAATCTAGTCATTGATAGTCTGGGGTTCTTCCCATCAATGGATGACATTTTTGACCGTCTATTGATATTGGCTAGTTATATTGGTCATCGATGTATTCAATTTGTAGAGGATCTTGCCCTCAGAGAAGCTGATAGATACTTAGAGGATTTGGTGAACTTTTCTGCTGGACAGCATTTAAAATCATTGAGACATGGCATTTGTAAATCATTTTCTGAAGATTCTTCATCGTCTTCAAAACCTTATATTTCTGATCGGGACCATGAATTCTGTGAAACAAGAGTCTCAGGCTCTAGGGATGAATTCCTTGTAGATATGAGATCTGAGATTGTAGAAACCAACTCCAGTCATGTGGCTGTTCCATTCATTTGTAAAGGGTTGATGCTGCCATTGTATGGTTTACAGTTTGCTTGGAGGTTGGCAATGTCTTGTTGGAGAAGTTCTTTCTTATATGCTAGAAGTGCTCATCTGCGAGTTCGTAGCATTGCATCTCGTGTACAGAGAACATTGCGAGGTTCATCTGATGATATTGGATGGTTGCAGCGCATTCCTAGCATGCCTTCTGTAAATGATGGTACAGAAAGATTCTTGGAATTGCTTGCCGGAATAAGGAAGGGAAAGCACGAACTGCCCAACTCATTTGTTTATCTACTAATTCCGGGACTCTTTAGCAATCACAGTCCATTGTATTTTGTTGGAACTAAGAGATTCTTTTCAAAGATGGGTCTAGCATGCCATATTGCGAAAATTCACAGCGAGGTATCTGTTGAGCACAATGCGTGGGAGCTGAAGCAATATATCGAGGAGCTTTATTGGGGATCCGGAAAGCGTGTGATGCTGCTAGGGCACAGCAAGGGTGGTGTTGATGCTGCAGCTGCATTGTCAATCTACTGGAATGATTTGAAAGACAAAGTTGCTGGTTTAGCACTGGTACAGTGTCCATATGGTGGCACTCCTTTAGCTTCTGATATTCTTCGTGAAGGCCAGGTTGCTGACAAAGAAACCCGCAGGATAATGGAGTTTTTGATATGCAAGCTAATCAAGGGTGACATACGGGCACTGGAGGATCTTACATATGACAAAAGGAAGGAGTTCATCATGAAGTACAAGCTTCCTGCAGAGCAAATTCCTCTAATTTCCTTCCATTCTGAGGCTAGCATTGCCCCTGGTGTCCTTGCCACAATGACTCATATAGCTCATGCAGAACTTCCATGGCTTCCCCTTCCAAAATTTGGCAATGAAGAATCGGACAACATTGTTCAAGCAAGTCGCCAGATGCCTGTAGTGATTCCTTTATCGGCGGCAATGGCTGTGTGTGCGCTCCACCTACAACTCAGGTATGGGGAGAAGAGTGATGGATTAGTGACATGCCGTGATGCTGAAGTTCCAGGTTCAGTTGTAGTCAAGCCAGATCGGAAGCTTGACCATGCATGGATGGTTTATTCTTCAAGGAAAAAGAATGCTAGTGAGGCCGATGCCTCTGAAATGTGTGAGTCTATTTTAACTCTGCTTGTGGAGCTCGGAAAGGGAAAAGCTTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

527

Amino Acids

58.97

Weight (kDa)

6.79

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05810 FvH4_1g05810 FvH4_1g05810 FvH4_1g05810 FvH4_1g05810 FvH4_1g05810
malus_domestica	MD02G1060100.v1.1
prunus_persica	Prupe.7G222800_v2.0.a1
pyrus_communis	pycom02g04910
rosa_chinensis	RchiOBHm_Chr2g0091461
rosa_laevigata	RLG00000016225
rosa_roxburghii	Rroxscaffold_2G00150060
rosa_rugosa	Rorug02G0018000 Rorug02G0018100
rosa_samantha	Rh2AG063000 Rh2BG062500 Rh2CG064200 Rh2DG062600
rosa_wichuraiana	Rw2G005710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	431, 983, 1268
AccIII	TCCGGA	1 cut(s)	857
AciI	CCGC	2 cut(s)	1042, 1337
AclWI	GGATC	4 cut(s)	156, 849, 862, 1110
AcsI	RAATTY	5 cut(s)	302, 338, 783, 1161, 1265
AcuI	CTGAAG	3 cut(s)	273, 845, 1437
AfaI	GTAC	4 cut(s)	534, 613, 969, 1142
AfiI	CCNNNNNNNGG	6 cut(s)	76, 431, 645, 983, 1186, 1268
AgsI	TTSAA	7 cut(s)	137, 273, 753, 940, 1298, 1485, 1576
AjnI	CCWGG	3 cut(s)	1020, 1201, 1423
Alw21I	GWGCWC	3 cut(s)	502, 810, 1557
Alw26I	GTCTC	2 cut(s)	220, 325
AlwI	GGATC	4 cut(s)	156, 849, 862, 1110
Aor13HI	TCCGGA	1 cut(s)	857
AoxI	GGCC	2 cut(s)	1018, 1506
ApeKI	GCWGC	6 cut(s)	421, 577, 874, 905, 908, 911
ApoI	RAATTY	5 cut(s)	302, 338, 783, 1161, 1265
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
Asp700I	GAANNNNTTC	1 cut(s)	1127
AspLEI	GCGC	2 cut(s)	582, 1357
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	696
AsuHPI	GGTGA	2 cut(s)	202, 1094
AsuNHI	GCTAGC	1 cut(s)	1190
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	2 cut(s)	885, 1096
BamHI	GGATCC	1 cut(s)	854
BanII	GRGCYC	1 cut(s)	1557
BauI	CACGAG	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	3 cut(s)	502, 810, 1557
BbvI	GCAGC	6 cut(s)	408, 589, 861, 892, 898, 920
BccI	CCATC	6 cut(s)	79, 564, 602, 751, 1385, 1465
BceAI	ACGGC	1 cut(s)	1392
BciT130I	CCWGG	3 cut(s)	1022, 1203, 1425
BcnI	CCSGG	1 cut(s)	696
BcoDI	GTCTC	2 cut(s)	220, 325
BfaI	CTAG	9 cut(s)	44, 111, 330, 492, 588, 764, 878, 1191, 1500
BfmI	CTRYAG	3 cut(s)	906, 1152, 1317
BglII	AGATCT	1 cut(s)	356
BisI	GCNGC	7 cut(s)	422, 578, 875, 906, 909, 912, 1338
BlsI	GCNGC	7 cut(s)	423, 579, 876, 907, 910, 913, 1339
Bme1390I	CCNGG	4 cut(s)	696, 1022, 1203, 1425
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	296, 856
BmrFI	CCNGG	4 cut(s)	696, 1022, 1203, 1425
BmsI	GCATC	7 cut(s)	408, 533, 861, 892, 1302, 1402, 1501
BmtI	GCTAGC	1 cut(s)	1194
BpiI	GAAGAC	1 cut(s)	261
BpmI	CTGGAG	2 cut(s)	364, 1118
BpuMI	CCSGG	1 cut(s)	696
Bsa29I	ATCGAT	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	1201, 1247
BsaWI	WCCGGW	1 cut(s)	857
Bsc4I	CCNNNNNNNGG	6 cut(s)	76, 431, 645, 983, 1186, 1268
Bse1I	ACTGG	4 cut(s)	381, 932, 969, 1101
Bse3DI	GCAATG	6 cut(s)	465, 519, 542, 1194, 1279, 1347
BseAI	TCCGGA	1 cut(s)	857
BseBI	CCWGG	3 cut(s)	1022, 1203, 1425
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	1201, 1247
BseGI	GGATG	4 cut(s)	85, 340, 575, 1476
BseLI	CCNNNNNNNGG	6 cut(s)	76, 431, 645, 983, 1186, 1268
BseMI	GCAATG	6 cut(s)	465, 519, 542, 1194, 1279, 1347
BseMII	CTCAG	5 cut(s)	172, 336, 351, 1176, 1384
BseNI	ACTGG	4 cut(s)	381, 932, 969, 1101
BseRI	GAGGAG	1 cut(s)	854
BseSI	GKGCMC	2 cut(s)	885, 1096
BseXI	GCAGC	6 cut(s)	408, 589, 861, 892, 898, 920
BshFI	GGCC	2 cut(s)	1020, 1508
BshVI	ATCGAT	1 cut(s)	127
BsiHKAI	GWGCWC	3 cut(s)	502, 810, 1557
BsiSI	CCGG	3 cut(s)	639, 695, 858
BslFI	GGGAC	2 cut(s)	308, 711
BslI	CCNNNNNNNGG	6 cut(s)	76, 431, 645, 983, 1186, 1268
BsmAI	GTCTC	2 cut(s)	220, 325
BsmFI	GGGAC	2 cut(s)	308, 711
BsmI	GAATGC	2 cut(s)	582, 1501
BsnI	GGCC	2 cut(s)	1020, 1508
Bsp1286I	GDGCHC	5 cut(s)	502, 810, 885, 1096, 1557
Bsp13I	TCCGGA	1 cut(s)	857
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	6 cut(s)	148, 289, 356, 854, 1102, 1447
Bsp19I	CCATGG	1 cut(s)	1247
BspACI	CCGC	2 cut(s)	1042, 1337
BspANI	GGCC	2 cut(s)	1020, 1508
BspCNI	CTCAG	5 cut(s)	171, 335, 352, 1177, 1383
BspDI	ATCGAT	1 cut(s)	127
BspEI	TCCGGA	1 cut(s)	857
BspHI	TCATGA	1 cut(s)	1134
BspLI	GGNNCC	2 cut(s)	296, 856
BspMAI	CTGCAG	2 cut(s)	910, 1156
BspOI	GCTAGC	1 cut(s)	1194
BspPI	GGATC	4 cut(s)	156, 849, 862, 1110
BsrDI	GCAATG	6 cut(s)	465, 519, 542, 1194, 1279, 1347
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	4 cut(s)	381, 932, 969, 1101
BssECI	CCNNGG	2 cut(s)	1201, 1247
BssMI	GATC	6 cut(s)	148, 289, 356, 854, 1102, 1447
BssSI	CACGAG	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	1247
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	3 cut(s)	1022, 1203, 1425
Bst4CI	ACNGT	5 cut(s)	28, 95, 441, 716, 972
Bst6I	CTCTTC	1 cut(s)	1379
BstAPI	GCANNNNNTGC	1 cut(s)	664
BstAUI	TGTACA	1 cut(s)	532
BstC8I	GCNNGC	5 cut(s)	593, 636, 769, 1070, 1192
BstDEI	CTNAG	7 cut(s)	158, 178, 322, 360, 738, 1185, 1370
BstDSI	CCRYGG	1 cut(s)	1247
BstF5I	GGATG	4 cut(s)	85, 340, 575, 1476
BstHHI	GCGC	2 cut(s)	582, 1357
BstKTI	GATC	6 cut(s)	151, 292, 359, 857, 1105, 1450
BstMAI	GTCTC	2 cut(s)	220, 325
BstMBI	GATC	6 cut(s)	148, 289, 356, 854, 1102, 1447
BstNI	CCWGG	3 cut(s)	1022, 1203, 1425
BstNSI	RCATGY	3 cut(s)	595, 771, 1407
BstSCI	CCNGG	4 cut(s)	694, 1020, 1201, 1423
BstSFI	CTRYAG	3 cut(s)	906, 1152, 1317
BstSLI	GKGCMC	2 cut(s)	885, 1096
BstV1I	GCAGC	6 cut(s)	408, 589, 861, 892, 898, 920
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	4 cut(s)	148, 356, 854, 1102
BstXI	CCANNNNNNTGG	1 cut(s)	388
BstYI	RGATCY	4 cut(s)	148, 356, 854, 1102
Bsu15I	ATCGAT	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	1020, 1508
BsuTUI	ATCGAT	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	1247
BtsCI	GGATG	4 cut(s)	85, 340, 575, 1476
BtsIMutI	CAGTG	3 cut(s)	962, 977, 1094
Cac8I	GCNNGC	5 cut(s)	593, 636, 769, 1070, 1192
CciI	TCATGA	1 cut(s)	1134
CfoI	GCGC	2 cut(s)	582, 1357
Cfr13I	GGNCC	1 cut(s)	295
ClaI	ATCGAT	1 cut(s)	127
Csp6I	GTAC	4 cut(s)	533, 612, 968, 1141
CviQI	GTAC	4 cut(s)	533, 612, 968, 1141
DdeI	CTNAG	7 cut(s)	158, 178, 322, 360, 738, 1185, 1370
DpnI	GATC	6 cut(s)	150, 291, 358, 856, 1104, 1449
DpnII	GATC	6 cut(s)	148, 289, 356, 854, 1102, 1447
DraI	TTTAAA	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	1379
EarI	CTCTTC	1 cut(s)	1379
Ecl136II	GAGCTC	1 cut(s)	1555
Eco130I	CCWWGG	1 cut(s)	1247
Eco24I	GRGCYC	1 cut(s)	1557
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	1555
Eco57I	CTGAAG	3 cut(s)	273, 845, 1437
EcoICRI	GAGCTC	1 cut(s)	1555
EcoRI	GAATTC	2 cut(s)	302, 338
EcoRII	CCWGG	3 cut(s)	1020, 1201, 1423
EcoT14I	CCWWGG	1 cut(s)	1247
EcoT22I	ATGCAT	1 cut(s)	1468
EcoT38I	GRGCYC	1 cut(s)	1557
ErhI	CCWWGG	1 cut(s)	1247
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FaqI	GGGAC	2 cut(s)	308, 711
FauI	CCCGC	1 cut(s)	1049
FauNDI	CATATG	2 cut(s)	979, 1111
Fnu4HI	GCNGC	7 cut(s)	422, 578, 875, 906, 909, 912, 1338
FokI	GGATG	4 cut(s)	92, 347, 582, 1483
FriOI	GRGCYC	1 cut(s)	1557
Fsp4HI	GCNGC	7 cut(s)	422, 578, 875, 906, 909, 912, 1338
FspBI	CTAG	9 cut(s)	44, 111, 330, 492, 588, 764, 878, 1191, 1500
GlaI	GCGC	2 cut(s)	581, 1356
GluI	GCNGC	7 cut(s)	422, 578, 875, 906, 909, 912, 1338
GsuI	CTGGAG	2 cut(s)	364, 1118
HaeIII	GGCC	2 cut(s)	1020, 1508
HapII	CCGG	3 cut(s)	639, 695, 858
HhaI	GCGC	2 cut(s)	582, 1357
Hin6I	GCGC	2 cut(s)	580, 1355
HinP1I	GCGC	2 cut(s)	580, 1355
HindIII	AAGCTT	3 cut(s)	1145, 1454, 1569
HpaII	CCGG	3 cut(s)	639, 695, 858
HphI	GGTGA	2 cut(s)	202, 1094
Hpy166II	GTNNAC	3 cut(s)	193, 437, 533
Hpy188III	TCNNGA	4 cut(s)	293, 858, 1013, 1135
Hpy8I	GTNNAC	3 cut(s)	193, 437, 533
HpyAV	CCTTC	6 cut(s)	606, 643, 1010, 1117, 1186, 1268
HpyCH4III	ACNGT	5 cut(s)	28, 95, 441, 716, 972
HpyCH4V	TGCA	8 cut(s)	524, 577, 908, 914, 1068, 1154, 1238, 1466
HpyF3I	CTNAG	7 cut(s)	158, 178, 322, 360, 738, 1185, 1370
HspAI	GCGC	2 cut(s)	580, 1355
Kpn2I	TCCGGA	1 cut(s)	857
Kzo9I	GATC	6 cut(s)	148, 289, 356, 854, 1102, 1447
LmnI	GCTCC	4 cut(s)	820, 841, 1362, 1552
Lsp1109I	GCAGC	6 cut(s)	408, 589, 861, 892, 898, 920
LweI	GCATC	7 cut(s)	408, 533, 861, 892, 1302, 1402, 1501
MaeI	CTAG	9 cut(s)	44, 111, 330, 492, 588, 764, 878, 1191, 1500
MaeIII	GTNAC	2 cut(s)	1082, 1399
MalI	GATC	6 cut(s)	150, 291, 358, 856, 1104, 1449
MboI	GATC	6 cut(s)	148, 289, 356, 854, 1102, 1447
MboII	GAAGA	8 cut(s)	58, 252, 261, 266, 1001, 1289, 1396, 1473
MflI	RGATCY	4 cut(s)	148, 356, 854, 1102
MhlI	GDGCHC	5 cut(s)	502, 810, 885, 1096, 1557
MlyI	GAGTC	4 cut(s)	327, 693, 1216, 1538
MmeI	TCCRAC	2 cut(s)	449, 712
Mph1103I	ATGCAT	1 cut(s)	1468
MroI	TCCGGA	1 cut(s)	857
MroXI	GAANNNNTTC	1 cut(s)	1127
MseI	TTAA	3 cut(s)	8, 215, 1538
MspA1I	CMGCKG	1 cut(s)	911
MspI	CCGG	3 cut(s)	639, 695, 858
MspR9I	CCNGG	4 cut(s)	696, 1022, 1203, 1425
Mva1269I	GAATGC	2 cut(s)	582, 1501
MvaI	CCWGG	3 cut(s)	1022, 1203, 1425
NciI	CCSGG	1 cut(s)	696
NcoI	CCATGG	1 cut(s)	1247
NdeI	CATATG	2 cut(s)	979, 1111
NdeII	GATC	6 cut(s)	148, 289, 356, 854, 1102, 1447
NheI	GCTAGC	1 cut(s)	1190
NlaIV	GGNNCC	2 cut(s)	296, 856
NmuCI	GTSAC	2 cut(s)	1082, 1399
NsiI	ATGCAT	1 cut(s)	1468
NspI	RCATGY	3 cut(s)	595, 771, 1407
PaeI	GCATGC	2 cut(s)	595, 771
PagI	TCATGA	1 cut(s)	1134
PctI	GAATGC	2 cut(s)	582, 1501
PdmI	GAANNNNTTC	1 cut(s)	1127
PfeI	GAWTC	6 cut(s)	40, 257, 621, 744, 1280, 1324
PflMI	CCANNNNNTGG	3 cut(s)	431, 983, 1268
PfoI	TCCNGGA	1 cut(s)	694
PkrI	GCNGC	7 cut(s)	423, 579, 876, 907, 910, 913, 1339
PleI	GAGTC	4 cut(s)	326, 693, 1216, 1537
PpsI	GAGTC	4 cut(s)	326, 693, 1216, 1537
Psp124BI	GAGCTC	1 cut(s)	1557
Psp6I	CCWGG	3 cut(s)	1020, 1201, 1423
PspGI	CCWGG	3 cut(s)	1020, 1201, 1423
PspN4I	GGNNCC	2 cut(s)	296, 856
PspPI	GGNCC	1 cut(s)	295
PstI	CTGCAG	2 cut(s)	910, 1156
PsuI	RGATCY	4 cut(s)	148, 356, 854, 1102
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	4 cut(s)	534, 613, 969, 1142
RsaNI	GTAC	4 cut(s)	533, 612, 968, 1141
SacI	GAGCTC	1 cut(s)	1557
SaqAI	TTAA	3 cut(s)	8, 215, 1538
SatI	GCNGC	7 cut(s)	422, 578, 875, 906, 909, 912, 1338
Sau3AI	GATC	6 cut(s)	148, 289, 356, 854, 1102, 1447
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	4 cut(s)	327, 693, 1216, 1538
ScrFI	CCNGG	4 cut(s)	696, 1022, 1203, 1425
SduI	GDGCHC	5 cut(s)	502, 810, 885, 1096, 1557
SfaNI	GCATC	7 cut(s)	408, 533, 861, 892, 1302, 1402, 1501
SfcI	CTRYAG	3 cut(s)	906, 1152, 1317
SinI	GGWCC	1 cut(s)	295
SphI	GCATGC	2 cut(s)	595, 771
SsiI	CCGC	2 cut(s)	1042, 1337
SspMI	CTAG	9 cut(s)	44, 111, 330, 492, 588, 764, 878, 1191, 1500
SstI	GAGCTC	1 cut(s)	1557
StyD4I	CCNGG	4 cut(s)	694, 1020, 1201, 1423
StyI	CCWWGG	1 cut(s)	1247
TaaI	ACNGT	5 cut(s)	28, 95, 441, 716, 972
TaqI	TCGA	2 cut(s)	127, 837
TatI	WGTACW	2 cut(s)	532, 1140
TauI	GCSGC	1 cut(s)	1340
TfiI	GAWTC	6 cut(s)	40, 257, 621, 744, 1280, 1324
Tru1I	TTAA	3 cut(s)	8, 215, 1538
Tru9I	TTAA	3 cut(s)	8, 215, 1538
TscAI	CASTG	3 cut(s)	969, 977, 1101
TseFI	GTSAC	2 cut(s)	1082, 1399
TseI	GCWGC	6 cut(s)	421, 577, 874, 905, 908, 911
Tsp45I	GTSAC	2 cut(s)	1082, 1399
TspDTI	ATGAA	9 cut(s)	47, 252, 315, 351, 391, 543, 1120, 1151, 1290
TspRI	CASTG	3 cut(s)	969, 977, 1101
Van91I	CCANNNNNTGG	3 cut(s)	431, 983, 1268
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	5 cut(s)	302, 338, 783, 1161, 1265
XceI	RCATGY	3 cut(s)	595, 771, 1407
XmnI	GAANNNNTTC	1 cut(s)	1127
XspI	CTAG	9 cut(s)	44, 111, 330, 492, 588, 764, 878, 1191, 1500
Zsp2I	ATGCAT	1 cut(s)	1468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.