Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012558

Physical Location & Seq

Genomic Coordinates Reverse (-)

19864081 .. 19867886

Gene Structure 3806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G222800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1674 bp

ATGGGTGATGTCTATATTGAAAATGAAATATCTGAAATGCCTCTCGCAGTGAGTACTTTTCAACTTTACGATTGTGCATTATTGCAAATTATCTGTACTTTTTCTGCCTATAATGATACTGTGTGGAACACAAGTCTTCTTTTTGATAGTCTGGAATTCTACTCATCAATGGATGACATTTTCAGCCGTCTATTGACACTGGCTAGTTATATAAGTCGTCGATTTATTCAATTTATAGAGGATCTTGCGGTCAGAGATGCTGATAGATACTCAGATGATTTGCTGGTCATTTCTGCTGGACAGCATTTAAGATCATTGAGACAAGGCATTTGTAAATCATTTTCTGAAGGTTGTTCATCATCTTCAAAACCTTGTAACCCTGAAACCTGTGAAAGAAGAGCCTCGGAGCCTACGGAAGATACAAGATCTGAAATTGTAGAAACCAATTTCAATTATACAGATGTCCCCTTCATTTTTGAAGGGTTGACACTACCATTACACGGTTTACAATTTGCTTGGAGATTGGCAATTTCTTGTTGGAGAAGTTCTGTCGTGTACGTTAGATGTGCTCATCTTCGAATTTGTAGCCTGGCATCTAGAGTACAGAAAACATTGCAAGGTTCATCTCACGATATTGGATGGTTGCCGCACACTCCTGGCATGCCTGGTGTGGAGGATGGTACAGCAAGATTCTTGGAATTGCTCGCAGGAATAAGGAATGGGGAGCACACATTGCCTAGCTCATTTGTCTATCTGCTTATTCCGGGCCTCTTTAGCAATCACGGCCCCTTATACTTTGTTGGAACAAAGAAATTCTTTTCGAAGATGGGTCTAGCTTGCCATATTGCAAAAATTCACAGTGAGGCATCTGTTGAGCACAATGCATTGGAACTCAAGCAATACATCGAGGAGCTTTACTGGGGATCCGGTAAGCGAGTGATGCTGCTGGGGCACAGCAAGGGCGGCGTTGATGCTGCAGCTGCATTGTCAATCTACTGGTGTGATTTGAAAGACAAAGTTGCTGGTTTAGCACTGGTACAGAGCCCCTATGGTGGCACTCCCTTGGCTTCTGATATTCTTCGTGAAGGCCAAATTGCGGACAAAGAAACCCGCAGGATCATGGAACTTTTGATATGCAAGCTAATTAAGGGTGACATTCGGGCACTGGAGGATCTTACTTATGAGAAGCGAAAGGAGTTCATCATGAAGCACAAGCTGCCATATGAGCAAATTCCTCTGGTTTCCTTCCACTCTGAGGCAAGCATAGCCCCTGATGTGCTTGCCACAATGACACATATAGCACATGCCGAACTTCCCTGGCTGCCCCTACCAAATTTTGGAACTCAAGAAGAGTCAGACGAAATCGTTCAAGCGGGACGCCAGCTGCCTGTAGTGATTCCTTTATCTGCTGCAATGGCTGTGACTGCACTTCATCTACAACTCAGGTACGGGGAGAAGAGTGACGGATTGGTGATGTGCCGTGACGCTCAAGTTCCAGGTTCGGTTGTGGTCGCACCGGACAGGAAGCTTGACCATGCCTGGATGGTTTATTCCACAAGGAAAAAGAATCCTAGTGATGCTAATGCCTCAGAAATGTGTGAGGCCATTTTAACTCTGCTTGTAGAGCTTGGAAAGTTAAAAGTAGGCTGCTTCCAAGGAAATGGCAGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

558

Amino Acids

62.03

Weight (kDa)

5.75

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05810 FvH4_1g05810 FvH4_1g05810 FvH4_1g05810 FvH4_1g05810 FvH4_1g05810
malus_domestica	MD02G1060100.v1.1
prunus_persica	Prupe.7G222800_v2.0.a1
pyrus_communis	pycom02g04910
rosa_chinensis	RchiOBHm_Chr2g0091461
rosa_laevigata	RLG00000016225
rosa_roxburghii	Rroxscaffold_2G00150060
rosa_rugosa	Rorug02G0018000 Rorug02G0018100
rosa_samantha	Rh2AG063000 Rh2BG062500 Rh2CG064200 Rh2DG062600
rosa_wichuraiana	Rw2G005710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1337
AciI	CCGC	6 cut(s)	248, 647, 963, 1097, 1111, 1373
AclWI	GGATC	5 cut(s)	249, 918, 931, 1124, 1179
AcsI	RAATTY	6 cut(s)	155, 579, 812, 852, 1230, 1333
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	1378
AfaI	GTAC	7 cut(s)	55, 97, 557, 603, 682, 1038, 1448
AfiI	CCNNNNNNNGG	5 cut(s)	500, 1052, 1096, 1255, 1337
AgsI	TTSAA	8 cut(s)	20, 62, 230, 366, 451, 479, 1009, 1370
AjnI	CCWGG	6 cut(s)	588, 655, 664, 1316, 1495, 1538
Alw21I	GWGCWC	3 cut(s)	571, 729, 879
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	5 cut(s)	249, 918, 931, 1124, 1179
AoxI	GGCC	4 cut(s)	766, 784, 1087, 1602
ApoI	RAATTY	6 cut(s)	155, 579, 812, 852, 1230, 1333
ArsI	GACNNNNNNTTYG	2 cut(s)	312, 344
Asp700I	GAANNNNTTC	1 cut(s)	1365
AspS9I	GGNCC	2 cut(s)	766, 785
AsuC2I	CCSGG	1 cut(s)	765
AsuHPI	GGTGA	3 cut(s)	17, 1163, 1483
AsuII	TTCGAA	2 cut(s)	577, 821
BaeGI	GKGCMC	2 cut(s)	954, 1165
BamHI	GGATCC	1 cut(s)	923
BanII	GRGCYC	1 cut(s)	1046
BbsI	GAAGAC	1 cut(s)	128
Bbv12I	GWGCWC	3 cut(s)	571, 729, 879
BbvI	GCAGC	9 cut(s)	930, 961, 967, 989, 1203, 1308, 1371, 1396, 1634
BccI	CCATC	4 cut(s)	633, 671, 820, 1537
BceAI	ACGGC	3 cut(s)	171, 799, 1464
BciT130I	CCWGG	6 cut(s)	590, 657, 666, 1318, 1497, 1540
BcnI	CCSGG	1 cut(s)	765
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	5 cut(s)	204, 597, 738, 833, 1572
BfmI	CTRYAG	2 cut(s)	975, 1389
BglII	AGATCT	1 cut(s)	425
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	7 cut(s)	590, 657, 666, 765, 1318, 1497, 1540
BmgT120I	GGNCC	2 cut(s)	766, 785
BmiI	GGNNCC	3 cut(s)	408, 787, 925
BmrFI	CCNGG	7 cut(s)	590, 657, 666, 765, 1318, 1497, 1540
BmrI	ACTGGG	1 cut(s)	928
BmsI	GCATC	6 cut(s)	247, 602, 875, 930, 961, 1567
BmuI	ACTGGG	1 cut(s)	928
BpiI	GAAGAC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	1187
Bpu14I	TTCGAA	2 cut(s)	577, 821
BpuEI	CTTGAG	3 cut(s)	878, 1329, 1473
BpuMI	CCSGG	1 cut(s)	765
BsaHI	GRCGYC	1 cut(s)	1378
BsaJI	CCNNGG	4 cut(s)	402, 1062, 1316, 1654
BsaWI	WCCGGW	2 cut(s)	926, 1516
Bsc4I	CCNNNNNNNGG	5 cut(s)	500, 1052, 1096, 1255, 1337
Bse1I	ACTGG	5 cut(s)	204, 923, 1001, 1038, 1170
Bse3DI	GCAATG	3 cut(s)	611, 731, 1419
BseBI	CCWGG	6 cut(s)	590, 657, 666, 1318, 1497, 1540
BseDI	CCNNGG	4 cut(s)	402, 1062, 1316, 1654
BseGI	GGATG	4 cut(s)	178, 644, 682, 1548
BseLI	CCNNNNNNNGG	5 cut(s)	500, 1052, 1096, 1255, 1337
BseMI	GCAATG	3 cut(s)	611, 731, 1419
BseMII	CTCAG	4 cut(s)	285, 1245, 1456, 1602
BseNI	ACTGG	5 cut(s)	204, 923, 1001, 1038, 1170
BseRI	GAGGAG	1 cut(s)	923
BseSI	GKGCMC	2 cut(s)	954, 1165
BseXI	GCAGC	9 cut(s)	930, 961, 967, 989, 1203, 1308, 1371, 1396, 1634
BseYI	CCCAGC	1 cut(s)	946
BsgI	GTGCAG	1 cut(s)	1410
BshFI	GGCC	4 cut(s)	768, 786, 1089, 1604
BsiHKAI	GWGCWC	3 cut(s)	571, 729, 879
BsiSI	CCGG	3 cut(s)	764, 927, 1517
BslFI	GGGAC	2 cut(s)	449, 1389
BslI	CCNNNNNNNGG	5 cut(s)	500, 1052, 1096, 1255, 1337
BsmAI	GTCTC	1 cut(s)	313
BsmFI	GGGAC	2 cut(s)	449, 1389
BsnI	GGCC	4 cut(s)	768, 786, 1089, 1604
Bsp119I	TTCGAA	2 cut(s)	577, 821
Bsp1286I	GDGCHC	6 cut(s)	571, 729, 879, 954, 1046, 1165
Bsp143I	GATC	6 cut(s)	241, 311, 425, 923, 1116, 1171
BspACI	CCGC	6 cut(s)	248, 647, 963, 1097, 1111, 1373
BspANI	GGCC	4 cut(s)	768, 786, 1089, 1604
BspCNI	CTCAG	4 cut(s)	284, 1246, 1455, 1601
BspHI	TCATGA	1 cut(s)	1203
BspLI	GGNNCC	3 cut(s)	408, 787, 925
BspMAI	CTGCAG	1 cut(s)	979
BspPI	GGATC	5 cut(s)	249, 918, 931, 1124, 1179
BspQI	GCTCTTC	1 cut(s)	391
BspT104I	TTCGAA	2 cut(s)	577, 821
BsrDI	GCAATG	3 cut(s)	611, 731, 1419
BsrI	ACTGG	5 cut(s)	204, 923, 1001, 1038, 1170
BssECI	CCNNGG	4 cut(s)	402, 1062, 1316, 1654
BssMI	GATC	6 cut(s)	241, 311, 425, 923, 1116, 1171
BssNI	GRCGYC	1 cut(s)	1378
BssT1I	CCWWGG	2 cut(s)	1062, 1654
Bst2UI	CCWGG	6 cut(s)	590, 657, 666, 1318, 1497, 1540
Bst4CI	ACNGT	3 cut(s)	121, 503, 860
Bst6I	CTCTTC	3 cut(s)	391, 1344, 1451
BstACI	GRCGYC	1 cut(s)	1378
BstAPI	GCANNNNNTGC	2 cut(s)	733, 1216
BstBI	TTCGAA	2 cut(s)	577, 821
BstC8I	GCNNGC	7 cut(s)	662, 705, 838, 1139, 1261, 1281, 1382
BstDEI	CTNAG	4 cut(s)	271, 1254, 1442, 1588
BstF5I	GGATG	4 cut(s)	178, 644, 682, 1548
BstKTI	GATC	6 cut(s)	244, 314, 428, 926, 1119, 1174
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	6 cut(s)	241, 311, 425, 923, 1116, 1171
BstNI	CCWGG	6 cut(s)	590, 657, 666, 1318, 1497, 1540
BstNSI	RCATGY	2 cut(s)	664, 1307
BstSCI	CCNGG	7 cut(s)	588, 655, 664, 763, 1316, 1495, 1538
BstSFI	CTRYAG	2 cut(s)	975, 1389
BstSLI	GKGCMC	2 cut(s)	954, 1165
BstV1I	GCAGC	9 cut(s)	930, 961, 967, 989, 1203, 1308, 1371, 1396, 1634
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	4 cut(s)	241, 425, 923, 1171
BstXI	CCANNNNNNTGG	1 cut(s)	1661
BstYI	RGATCY	4 cut(s)	241, 425, 923, 1171
BsuRI	GGCC	4 cut(s)	768, 786, 1089, 1604
BtsCI	GGATG	4 cut(s)	178, 644, 682, 1548
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	5 cut(s)	54, 197, 865, 1031, 1163
Cac8I	GCNNGC	7 cut(s)	662, 705, 838, 1139, 1261, 1281, 1382
CciI	TCATGA	1 cut(s)	1203
Cfr13I	GGNCC	2 cut(s)	766, 785
CseI	GACGC	2 cut(s)	1386, 1493
Csp6I	GTAC	7 cut(s)	54, 96, 556, 602, 681, 1037, 1447
CviAII	CATG	5 cut(s)	661, 1120, 1204, 1304, 1535
CviQI	GTAC	7 cut(s)	54, 96, 556, 602, 681, 1037, 1447
DdeI	CTNAG	4 cut(s)	271, 1254, 1442, 1588
DpnI	GATC	6 cut(s)	243, 313, 427, 925, 1118, 1173
DpnII	GATC	6 cut(s)	241, 311, 425, 923, 1116, 1171
Eam1104I	CTCTTC	3 cut(s)	391, 1344, 1451
EarI	CTCTTC	3 cut(s)	391, 1344, 1451
Eco130I	CCWWGG	2 cut(s)	1062, 1654
Eco24I	GRGCYC	1 cut(s)	1046
Eco57I	CTGAAG	1 cut(s)	366
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	6 cut(s)	588, 655, 664, 1316, 1495, 1538
EcoT14I	CCWWGG	2 cut(s)	1062, 1654
EcoT22I	ATGCAT	1 cut(s)	886
EcoT38I	GRGCYC	1 cut(s)	1046
ErhI	CCWWGG	2 cut(s)	1062, 1654
FaeI	CATG	5 cut(s)	664, 1123, 1207, 1307, 1538
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FaqI	GGGAC	2 cut(s)	449, 1389
FatI	CATG	5 cut(s)	660, 1119, 1203, 1303, 1534
FauI	CCCGC	2 cut(s)	1118, 1366
FauNDI	CATATG	1 cut(s)	1222
FokI	GGATG	4 cut(s)	185, 651, 689, 1555
FriOI	GRGCYC	1 cut(s)	1046
FspBI	CTAG	5 cut(s)	204, 597, 738, 833, 1572
GsaI	CCCAGC	1 cut(s)	950
GsuI	CTGGAG	1 cut(s)	1187
HaeIII	GGCC	4 cut(s)	768, 786, 1089, 1604
HapII	CCGG	3 cut(s)	764, 927, 1517
HgaI	GACGC	2 cut(s)	1386, 1493
Hin1I	GRCGYC	1 cut(s)	1378
Hin1II	CATG	5 cut(s)	664, 1123, 1207, 1307, 1538
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	1526
HinfI	GANTC	4 cut(s)	690, 1352, 1396, 1567
HpaII	CCGG	3 cut(s)	764, 927, 1517
HphI	GGTGA	3 cut(s)	17, 1163, 1483
Hpy166II	GTNNAC	3 cut(s)	486, 506, 556
Hpy188III	TCNNGA	6 cut(s)	152, 597, 629, 1082, 1204, 1346
Hpy8I	GTNNAC	3 cut(s)	486, 506, 556
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	5 cut(s)	341, 473, 478, 1079, 1255
HpyCH4III	ACNGT	3 cut(s)	121, 503, 860
HpyCH4IV	ACGT	1 cut(s)	558
HpyF3I	CTNAG	4 cut(s)	271, 1254, 1442, 1588
HpySE526I	ACGT	1 cut(s)	558
Hsp92I	GRCGYC	1 cut(s)	1378
Hsp92II	CATG	5 cut(s)	664, 1123, 1207, 1307, 1538
Kzo9I	GATC	6 cut(s)	241, 311, 425, 923, 1116, 1171
LguI	GCTCTTC	1 cut(s)	391
LmnI	GCTCC	3 cut(s)	406, 724, 910
Lsp1109I	GCAGC	9 cut(s)	930, 961, 967, 989, 1203, 1308, 1371, 1396, 1634
LweI	GCATC	6 cut(s)	247, 602, 875, 930, 961, 1567
MaeI	CTAG	5 cut(s)	204, 597, 738, 833, 1572
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	5 cut(s)	374, 1151, 1420, 1460, 1481
MalI	GATC	6 cut(s)	243, 313, 427, 925, 1118, 1173
MboI	GATC	6 cut(s)	241, 311, 425, 923, 1116, 1171
MboII	GAAGA	9 cut(s)	128, 354, 408, 428, 566, 835, 1070, 1361, 1468
MflI	RGATCY	4 cut(s)	241, 425, 923, 1171
MhlI	GDGCHC	6 cut(s)	571, 729, 879, 954, 1046, 1165
MlyI	GAGTC	1 cut(s)	1361
MmeI	TCCRAC	2 cut(s)	518, 781
Mph1103I	ATGCAT	1 cut(s)	886
MroXI	GAANNNNTTC	1 cut(s)	1365
MseI	TTAA	5 cut(s)	308, 1146, 1610, 1637, 1672
MspA1I	CMGCKG	2 cut(s)	980, 1384
MspI	CCGG	3 cut(s)	764, 927, 1517
MspR9I	CCNGG	7 cut(s)	590, 657, 666, 765, 1318, 1497, 1540
MvaI	CCWGG	6 cut(s)	590, 657, 666, 1318, 1497, 1540
NciI	CCSGG	1 cut(s)	765
NdeI	CATATG	1 cut(s)	1222
NdeII	GATC	6 cut(s)	241, 311, 425, 923, 1116, 1171
NlaIII	CATG	5 cut(s)	664, 1123, 1207, 1307, 1538
NlaIV	GGNNCC	3 cut(s)	408, 787, 925
NmuCI	GTSAC	4 cut(s)	1151, 1420, 1460, 1481
NsiI	ATGCAT	1 cut(s)	886
NspI	RCATGY	2 cut(s)	664, 1307
NspV	TTCGAA	2 cut(s)	577, 821
PaeI	GCATGC	1 cut(s)	664
PagI	TCATGA	1 cut(s)	1203
PciSI	GCTCTTC	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	1365
PfeI	GAWTC	3 cut(s)	690, 1396, 1567
PflMI	CCANNNNNTGG	1 cut(s)	1337
PleI	GAGTC	1 cut(s)	1360
PpsI	GAGTC	1 cut(s)	1360
Psp6I	CCWGG	6 cut(s)	588, 655, 664, 1316, 1495, 1538
PspFI	CCCAGC	1 cut(s)	946
PspGI	CCWGG	6 cut(s)	588, 655, 664, 1316, 1495, 1538
PspN4I	GGNNCC	3 cut(s)	408, 787, 925
PspPI	GGNCC	2 cut(s)	766, 785
PstI	CTGCAG	1 cut(s)	979
PsuI	RGATCY	4 cut(s)	241, 425, 923, 1171
PvuII	CAGCTG	2 cut(s)	980, 1384
RsaI	GTAC	7 cut(s)	55, 97, 557, 603, 682, 1038, 1448
RsaNI	GTAC	7 cut(s)	54, 96, 556, 602, 681, 1037, 1447
SapI	GCTCTTC	1 cut(s)	391
SaqAI	TTAA	5 cut(s)	308, 1146, 1610, 1637, 1672
Sau3AI	GATC	6 cut(s)	241, 311, 425, 923, 1116, 1171
Sau96I	GGNCC	2 cut(s)	766, 785
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	1 cut(s)	1361
ScrFI	CCNGG	7 cut(s)	590, 657, 666, 765, 1318, 1497, 1540
SduI	GDGCHC	6 cut(s)	571, 729, 879, 954, 1046, 1165
SfaNI	GCATC	6 cut(s)	247, 602, 875, 930, 961, 1567
SfcI	CTRYAG	2 cut(s)	975, 1389
SfuI	TTCGAA	2 cut(s)	577, 821
SmlI	CTYRAG	3 cut(s)	893, 1344, 1488
SmoI	CTYRAG	3 cut(s)	893, 1344, 1488
SphI	GCATGC	1 cut(s)	664
SsiI	CCGC	6 cut(s)	248, 647, 963, 1097, 1111, 1373
SspMI	CTAG	5 cut(s)	204, 597, 738, 833, 1572
StyD4I	CCNGG	7 cut(s)	588, 655, 664, 763, 1316, 1495, 1538
StyI	CCWWGG	2 cut(s)	1062, 1654
TaaI	ACNGT	3 cut(s)	121, 503, 860
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	4 cut(s)	220, 577, 821, 906
TatI	WGTACW	3 cut(s)	53, 95, 601
TauI	GCSGC	2 cut(s)	649, 966
TfiI	GAWTC	3 cut(s)	690, 1396, 1567
Tru1I	TTAA	5 cut(s)	308, 1146, 1610, 1637, 1672
Tru9I	TTAA	5 cut(s)	308, 1146, 1610, 1637, 1672
TscAI	CASTG	5 cut(s)	54, 204, 865, 1038, 1170
TseFI	GTSAC	4 cut(s)	1151, 1420, 1460, 1481
Tsp45I	GTSAC	4 cut(s)	1151, 1420, 1460, 1481
TspDTI	ATGAA	7 cut(s)	39, 345, 460, 612, 1189, 1220, 1421
TspGWI	ACGGA	2 cut(s)	428, 1479
TspRI	CASTG	5 cut(s)	54, 204, 865, 1038, 1170
Van91I	CCANNNNNTGG	1 cut(s)	1337
XapI	RAATTY	6 cut(s)	155, 579, 812, 852, 1230, 1333
XbaI	TCTAGA	1 cut(s)	596
XceI	RCATGY	2 cut(s)	664, 1307
XmnI	GAANNNNTTC	1 cut(s)	1365
XspI	CTAG	5 cut(s)	204, 597, 738, 833, 1572
ZrmI	AGTACT	1 cut(s)	55
Zsp2I	ATGCAT	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.