Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012558

Physical Location & Seq

Genomic Coordinates Reverse (-)

87535214 .. 87539367

Gene Structure 4154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGGGTGATGTATATATTGGAAGTGAAATATCTGAAATGCCTTTAACAGCCTATAATGATACTGTGATGAACACGAGTCTAGTCATTGATAGTCTGGGGTTCTTGTCATCAATGGATGACATTTTTGACCGTCTATTGATATTGGCTAGTTATATTGGTCATCGATGTATTCAATTTGTAGAGGATCTTGCCCTCAGAGAAGCTGATAGATACTTAGAGGATTTGGCGAACTTTTCTTCTGGACAGCATTTAAAATCATTGAGACATGGCATTTGTAAATCATTTTCTGAAGGTTCTTCATCGTCTTCAAAACCTTATATTTCTGATCGAGACCATGAAATCTGTGAAAGAAGAGTCGCAGGCTCTAGGGATGAATTCCTTGTAGATATGAGATCTGAGATTGTAGAAACCAACTCCAGTCATGCGGCTGTTCCATTCATTTGTAAAGGGTTGATGCTGCCATTGTATGGTTTACAGTTTGCTTGGAGGTTGGCAATGTCTTGTTGGAGAAGTTCTTTCTTATATGCTAGAAGTGCTCATCTGCGAGTTCATAGCATCGCATCTCGTGTACAGAGAACATTGCGAGGTTCATCTGATGATATTGGATGGTTGCAGCGCATTCCTAGCATGCCTTCTGTAAATGATGGTACAGAAAGATTCTTGGAATTGCTTGCCGGAATAAGGAAGGGAAAGCACGAACTGCCCAACTCATTTGTTTATCTACTAATTCCGGGACTCTTTAGCAATCACAGTCCATTGTATTTTGTTGGAACTAGGAGATTCTTTTCAAAGATGGGTCTAGCATGCCATATTGCGAAAATTCACAGCAAGGTTTCTGTTGAGCACAATGCGTGGGAGCTGAAGCAATATATCGAGGAGCTTTACTGGGGATCTGGAAAGCGTGTGATGCTGCTAGGGCACAGCAAGGGTGGTGTTGATGCTGCAGCTGCATTGTCAATCTACTGGAATGATTTGAAAGACAAAGTTGCTGGTTTAGCACTGGTACAGTGTCCATATGGTGGCACTCCTTTAGCTTCTGATATTCTTCGTGAAGGCCAGGTTGCTGACAAAGAAACCCGCAGGATAATGGAGTTTTTGATATGCAAGCTAATCAAGGGTGACATACGGGCACTGGAGGATCTTACATACGACAAAAGGAAGGAGTTCATCATGAAGTACAAGCTTCCTGCAGAGCAAATTCCTCTAATTTCCTTCCATTCTGAGGCTAGCATTGCTCCCGGTGTCCTTGCCACAATGACTCATATAGCTCATGCAGAACTTCCATGGCTTCCCCTTCCAAAATTTGGCAATGAAGAATCGGACAACATTGTTCAAGCAAGTCGCCAGATGCCTGTAGTGATTCCTTTATCTGCGGCAATGGCTGTGTGTGCACTCCACTTACAACTCAGGTATGGGGAGAAGAGTGATGGATTAGTGACATGCCGTGATGCTGAAGTTCCAGGTTCAGTTGTAGTCAAGCCAGATCGGAAGCTTGACCATGCATGGATGGTTTATTCTTCGAGGAAAAAGAATGCTAGTGAGGCCGATGCCTCTGAAATGTGTGAGTCTATTTTAACTCTGCTTGTGGAGCTCGGAAAGGGTAAAGCTTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

538

Amino Acids

60.09

Weight (kDa)

6.81

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012558)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05810 FvH4_1g05810 FvH4_1g05810 FvH4_1g05810 FvH4_1g05810 FvH4_1g05810
malus_domestica	MD02G1060100.v1.1
prunus_persica	Prupe.7G222800_v2.0.a1
pyrus_communis	pycom02g04910
rosa_chinensis	RchiOBHm_Chr2g0091461
rosa_laevigata	RLG00000016225
rosa_roxburghii	Rroxscaffold_2G00150060
rosa_rugosa	Rorug02G0018000 Rorug02G0018100
rosa_samantha	Rh2AG063000 Rh2BG062500 Rh2CG064200 Rh2DG062600
rosa_wichuraiana	Rw2G005710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	467, 1019, 1304
AciI	CCGC	3 cut(s)	425, 1078, 1373
AclWI	GGATC	3 cut(s)	192, 898, 1146
AcsI	RAATTY	4 cut(s)	374, 819, 1197, 1301
AcuI	CTGAAG	3 cut(s)	309, 881, 1473
AfaI	GTAC	4 cut(s)	570, 649, 1005, 1178
AfiI	CCNNNNNNNGG	5 cut(s)	467, 681, 1019, 1222, 1304
AgsI	TTSAA	6 cut(s)	173, 309, 789, 976, 1334, 1612
AjnI	CCWGG	2 cut(s)	1056, 1459
Alw21I	GWGCWC	4 cut(s)	538, 846, 1393, 1593
Alw26I	GTCTC	2 cut(s)	256, 324
Alw44I	GTGCAC	1 cut(s)	1389
AlwI	GGATC	3 cut(s)	192, 898, 1146
AoxI	GGCC	2 cut(s)	1054, 1542
ApaLI	GTGCAC	1 cut(s)	1389
ApeKI	GCWGC	6 cut(s)	457, 613, 910, 941, 944, 947
ApoI	RAATTY	4 cut(s)	374, 819, 1197, 1301
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
Asp700I	GAANNNNTTC	1 cut(s)	1163
AspLEI	GCGC	1 cut(s)	618
AsuC2I	CCSGG	2 cut(s)	732, 1239
AsuHPI	GGTGA	2 cut(s)	17, 1130
AsuNHI	GCTAGC	1 cut(s)	1226
BaeGI	GKGCMC	3 cut(s)	921, 1132, 1393
BanII	GRGCYC	1 cut(s)	1593
BauI	CACGAG	2 cut(s)	73, 564
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	4 cut(s)	538, 846, 1393, 1593
BbvI	GCAGC	6 cut(s)	444, 625, 897, 928, 934, 956
BccI	CCATC	5 cut(s)	600, 638, 787, 1421, 1501
BceAI	ACGGC	1 cut(s)	1428
BciT130I	CCWGG	2 cut(s)	1058, 1461
BcnI	CCSGG	2 cut(s)	732, 1239
BcoDI	GTCTC	2 cut(s)	256, 324
BfmI	CTRYAG	3 cut(s)	942, 1188, 1353
BglII	AGATCT	1 cut(s)	392
BisI	GCNGC	8 cut(s)	426, 458, 614, 911, 942, 945, 948, 1374
BlsI	GCNGC	8 cut(s)	427, 459, 615, 912, 943, 946, 949, 1375
Bme1390I	CCNGG	4 cut(s)	732, 1058, 1239, 1461
BmrFI	CCNGG	4 cut(s)	732, 1058, 1239, 1461
BmrI	ACTGGG	1 cut(s)	895
BmsI	GCATC	8 cut(s)	444, 564, 569, 897, 928, 1338, 1438, 1537
BmtI	GCTAGC	1 cut(s)	1230
BmuI	ACTGGG	1 cut(s)	895
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	2 cut(s)	400, 1154
BpuMI	CCSGG	2 cut(s)	732, 1239
Bsa29I	ATCGAT	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	1283
Bsc4I	CCNNNNNNNGG	5 cut(s)	467, 681, 1019, 1222, 1304
Bse1I	ACTGG	5 cut(s)	417, 890, 968, 1005, 1137
Bse3DI	GCAATG	5 cut(s)	501, 578, 1230, 1315, 1383
BseBI	CCWGG	2 cut(s)	1058, 1461
BseCI	ATCGAT	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	1283
BseGI	GGATG	4 cut(s)	121, 376, 611, 1512
BseLI	CCNNNNNNNGG	5 cut(s)	467, 681, 1019, 1222, 1304
BseMI	GCAATG	5 cut(s)	501, 578, 1230, 1315, 1383
BseMII	CTCAG	4 cut(s)	208, 387, 1212, 1420
BseNI	ACTGG	5 cut(s)	417, 890, 968, 1005, 1137
BseRI	GAGGAG	1 cut(s)	890
BseSI	GKGCMC	3 cut(s)	921, 1132, 1393
BseXI	GCAGC	6 cut(s)	444, 625, 897, 928, 934, 956
BshFI	GGCC	2 cut(s)	1056, 1544
BshVI	ATCGAT	1 cut(s)	163
BsiHKAI	GWGCWC	4 cut(s)	538, 846, 1393, 1593
BsiSI	CCGG	3 cut(s)	675, 731, 1239
BslFI	GGGAC	1 cut(s)	747
BslI	CCNNNNNNNGG	5 cut(s)	467, 681, 1019, 1222, 1304
BsmAI	GTCTC	2 cut(s)	256, 324
BsmFI	GGGAC	1 cut(s)	747
BsmI	GAATGC	2 cut(s)	618, 1537
BsnI	GGCC	2 cut(s)	1056, 1544
Bso31I	GGTCTC	1 cut(s)	324
Bsp1286I	GDGCHC	6 cut(s)	538, 846, 921, 1132, 1393, 1593
Bsp1407I	TGTACA	1 cut(s)	568
Bsp143I	GATC	6 cut(s)	184, 325, 392, 890, 1138, 1483
Bsp19I	CCATGG	1 cut(s)	1283
BspACI	CCGC	3 cut(s)	425, 1078, 1373
BspANI	GGCC	2 cut(s)	1056, 1544
BspCNI	CTCAG	4 cut(s)	207, 388, 1213, 1419
BspDI	ATCGAT	1 cut(s)	163
BspHI	TCATGA	1 cut(s)	1170
BspMAI	CTGCAG	2 cut(s)	946, 1192
BspOI	GCTAGC	1 cut(s)	1230
BspPI	GGATC	3 cut(s)	192, 898, 1146
BspTNI	GGTCTC	1 cut(s)	324
BsrDI	GCAATG	5 cut(s)	501, 578, 1230, 1315, 1383
BsrGI	TGTACA	1 cut(s)	568
BsrI	ACTGG	5 cut(s)	417, 890, 968, 1005, 1137
BssECI	CCNNGG	1 cut(s)	1283
BssMI	GATC	6 cut(s)	184, 325, 392, 890, 1138, 1483
BssSI	CACGAG	2 cut(s)	73, 564
BssT1I	CCWWGG	1 cut(s)	1283
Bst2BI	CACGAG	2 cut(s)	73, 564
Bst2UI	CCWGG	2 cut(s)	1058, 1461
Bst4CI	ACNGT	5 cut(s)	64, 131, 477, 752, 1008
Bst6I	CTCTTC	2 cut(s)	346, 1415
BstAPI	GCANNNNNTGC	1 cut(s)	700
BstAUI	TGTACA	1 cut(s)	568
BstC8I	GCNNGC	6 cut(s)	361, 629, 672, 805, 1106, 1228
BstDEI	CTNAG	5 cut(s)	194, 214, 396, 1221, 1406
BstDSI	CCRYGG	1 cut(s)	1283
BstF5I	GGATG	4 cut(s)	121, 376, 611, 1512
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	6 cut(s)	187, 328, 395, 893, 1141, 1486
BstMAI	GTCTC	2 cut(s)	256, 324
BstMBI	GATC	6 cut(s)	184, 325, 392, 890, 1138, 1483
BstNI	CCWGG	2 cut(s)	1058, 1461
BstNSI	RCATGY	3 cut(s)	631, 807, 1443
BstSCI	CCNGG	4 cut(s)	730, 1056, 1237, 1459
BstSFI	CTRYAG	3 cut(s)	942, 1188, 1353
BstSLI	GKGCMC	3 cut(s)	921, 1132, 1393
BstV1I	GCAGC	6 cut(s)	444, 625, 897, 928, 934, 956
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	4 cut(s)	184, 392, 890, 1138
BstYI	RGATCY	4 cut(s)	184, 392, 890, 1138
Bsu15I	ATCGAT	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	1056, 1544
BsuTUI	ATCGAT	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	1283
BtgZI	GCGATG	1 cut(s)	541
BtsCI	GGATG	4 cut(s)	121, 376, 611, 1512
BtsIMutI	CAGTG	3 cut(s)	998, 1013, 1130
Cac8I	GCNNGC	6 cut(s)	361, 629, 672, 805, 1106, 1228
CciI	TCATGA	1 cut(s)	1170
CfoI	GCGC	1 cut(s)	618
ClaI	ATCGAT	1 cut(s)	163
Csp6I	GTAC	4 cut(s)	569, 648, 1004, 1177
CviQI	GTAC	4 cut(s)	569, 648, 1004, 1177
DdeI	CTNAG	5 cut(s)	194, 214, 396, 1221, 1406
DpnI	GATC	6 cut(s)	186, 327, 394, 892, 1140, 1485
DpnII	GATC	6 cut(s)	184, 325, 392, 890, 1138, 1483
DraI	TTTAAA	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	346, 1415
EarI	CTCTTC	2 cut(s)	346, 1415
Ecl136II	GAGCTC	1 cut(s)	1591
Eco130I	CCWWGG	1 cut(s)	1283
Eco24I	GRGCYC	1 cut(s)	1593
Eco31I	GGTCTC	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	1591
Eco57I	CTGAAG	3 cut(s)	309, 881, 1473
EcoICRI	GAGCTC	1 cut(s)	1591
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	1056, 1459
EcoT14I	CCWWGG	1 cut(s)	1283
EcoT22I	ATGCAT	1 cut(s)	1504
EcoT38I	GRGCYC	1 cut(s)	1593
ErhI	CCWWGG	1 cut(s)	1283
FaqI	GGGAC	1 cut(s)	747
FauI	CCCGC	1 cut(s)	1085
FauNDI	CATATG	1 cut(s)	1015
Fnu4HI	GCNGC	8 cut(s)	426, 458, 614, 911, 942, 945, 948, 1374
FokI	GGATG	4 cut(s)	128, 383, 618, 1519
FriOI	GRGCYC	1 cut(s)	1593
Fsp4HI	GCNGC	8 cut(s)	426, 458, 614, 911, 942, 945, 948, 1374
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	8 cut(s)	426, 458, 614, 911, 942, 945, 948, 1374
GsuI	CTGGAG	2 cut(s)	400, 1154
HaeIII	GGCC	2 cut(s)	1056, 1544
HapII	CCGG	3 cut(s)	675, 731, 1239
HhaI	GCGC	1 cut(s)	618
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HindIII	AAGCTT	3 cut(s)	1181, 1490, 1605
HinfI	GANTC	9 cut(s)	76, 354, 657, 735, 780, 1258, 1316, 1360, 1565
HpaII	CCGG	3 cut(s)	675, 731, 1239
HphI	GGTGA	2 cut(s)	17, 1130
Hpy166II	GTNNAC	3 cut(s)	473, 569, 1391
Hpy188III	TCNNGA	5 cut(s)	240, 329, 894, 1049, 1171
Hpy8I	GTNNAC	3 cut(s)	473, 569, 1391
HpyAV	CCTTC	7 cut(s)	284, 642, 679, 1046, 1153, 1222, 1304
HpyCH4III	ACNGT	5 cut(s)	64, 131, 477, 752, 1008
HpyCH4V	TGCA	8 cut(s)	613, 944, 950, 1104, 1190, 1274, 1391, 1502
HpyF3I	CTNAG	5 cut(s)	194, 214, 396, 1221, 1406
HspAI	GCGC	1 cut(s)	616
Kzo9I	GATC	6 cut(s)	184, 325, 392, 890, 1138, 1483
LmnI	GCTCC	4 cut(s)	856, 877, 1240, 1588
Lsp1109I	GCAGC	6 cut(s)	444, 625, 897, 928, 934, 956
LweI	GCATC	8 cut(s)	444, 564, 569, 897, 928, 1338, 1438, 1537
MaeIII	GTNAC	2 cut(s)	1118, 1435
MalI	GATC	6 cut(s)	186, 327, 394, 892, 1140, 1485
MboI	GATC	6 cut(s)	184, 325, 392, 890, 1138, 1483
MboII	GAAGA	8 cut(s)	228, 288, 297, 363, 1037, 1325, 1432, 1509
MflI	RGATCY	4 cut(s)	184, 392, 890, 1138
MhlI	GDGCHC	6 cut(s)	538, 846, 921, 1132, 1393, 1593
MluCI	AATT	9 cut(s)	173, 374, 665, 726, 819, 1197, 1206, 1301, 1612
MlyI	GAGTC	5 cut(s)	85, 363, 729, 1252, 1574
MmeI	TCCRAC	2 cut(s)	485, 748
Mph1103I	ATGCAT	1 cut(s)	1504
MroXI	GAANNNNTTC	1 cut(s)	1163
MseI	TTAA	3 cut(s)	44, 251, 1574
MspA1I	CMGCKG	1 cut(s)	947
MspI	CCGG	3 cut(s)	675, 731, 1239
MspR9I	CCNGG	4 cut(s)	732, 1058, 1239, 1461
Mva1269I	GAATGC	2 cut(s)	618, 1537
MvaI	CCWGG	2 cut(s)	1058, 1461
NciI	CCSGG	2 cut(s)	732, 1239
NcoI	CCATGG	1 cut(s)	1283
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	6 cut(s)	184, 325, 392, 890, 1138, 1483
NheI	GCTAGC	1 cut(s)	1226
NmuCI	GTSAC	2 cut(s)	1118, 1435
NsiI	ATGCAT	1 cut(s)	1504
NspI	RCATGY	3 cut(s)	631, 807, 1443
PaeI	GCATGC	2 cut(s)	631, 807
PagI	TCATGA	1 cut(s)	1170
PctI	GAATGC	2 cut(s)	618, 1537
PdmI	GAANNNNTTC	1 cut(s)	1163
PfeI	GAWTC	4 cut(s)	657, 780, 1316, 1360
PflMI	CCANNNNNTGG	3 cut(s)	467, 1019, 1304
PfoI	TCCNGGA	1 cut(s)	730
PkrI	GCNGC	8 cut(s)	427, 459, 615, 912, 943, 946, 949, 1375
PleI	GAGTC	5 cut(s)	84, 362, 729, 1252, 1573
PpsI	GAGTC	5 cut(s)	84, 362, 729, 1252, 1573
Psp124BI	GAGCTC	1 cut(s)	1593
Psp6I	CCWGG	2 cut(s)	1056, 1459
PspGI	CCWGG	2 cut(s)	1056, 1459
PstI	CTGCAG	2 cut(s)	946, 1192
PsuI	RGATCY	4 cut(s)	184, 392, 890, 1138
PvuII	CAGCTG	1 cut(s)	947
RsaI	GTAC	4 cut(s)	570, 649, 1005, 1178
RsaNI	GTAC	4 cut(s)	569, 648, 1004, 1177
SacI	GAGCTC	1 cut(s)	1593
SaqAI	TTAA	3 cut(s)	44, 251, 1574
SatI	GCNGC	8 cut(s)	426, 458, 614, 911, 942, 945, 948, 1374
Sau3AI	GATC	6 cut(s)	184, 325, 392, 890, 1138, 1483
SchI	GAGTC	5 cut(s)	85, 363, 729, 1252, 1574
ScrFI	CCNGG	4 cut(s)	732, 1058, 1239, 1461
SduI	GDGCHC	6 cut(s)	538, 846, 921, 1132, 1393, 1593
SfaNI	GCATC	8 cut(s)	444, 564, 569, 897, 928, 1338, 1438, 1537
SfcI	CTRYAG	3 cut(s)	942, 1188, 1353
SphI	GCATGC	2 cut(s)	631, 807
Sse9I	AATT	9 cut(s)	173, 374, 665, 726, 819, 1197, 1206, 1301, 1612
SsiI	CCGC	3 cut(s)	425, 1078, 1373
SstI	GAGCTC	1 cut(s)	1593
StyD4I	CCNGG	4 cut(s)	730, 1056, 1237, 1459
StyI	CCWWGG	1 cut(s)	1283
TaaI	ACNGT	5 cut(s)	64, 131, 477, 752, 1008
TaqI	TCGA	4 cut(s)	163, 328, 873, 1520
TasI	AATT	9 cut(s)	173, 374, 665, 726, 819, 1197, 1206, 1301, 1612
TatI	WGTACW	2 cut(s)	568, 1176
TauI	GCSGC	2 cut(s)	428, 1376
TfiI	GAWTC	4 cut(s)	657, 780, 1316, 1360
Tru1I	TTAA	3 cut(s)	44, 251, 1574
Tru9I	TTAA	3 cut(s)	44, 251, 1574
TscAI	CASTG	3 cut(s)	1005, 1013, 1137
TseFI	GTSAC	2 cut(s)	1118, 1435
TseI	GCWGC	6 cut(s)	457, 613, 910, 941, 944, 947
Tsp45I	GTSAC	2 cut(s)	1118, 1435
TspRI	CASTG	3 cut(s)	1005, 1013, 1137
Van91I	CCANNNNNTGG	3 cut(s)	467, 1019, 1304
VneI	GTGCAC	1 cut(s)	1389
XapI	RAATTY	4 cut(s)	374, 819, 1197, 1301
XceI	RCATGY	3 cut(s)	631, 807, 1443
XmnI	GAANNNNTTC	1 cut(s)	1163
Zsp2I	ATGCAT	1 cut(s)	1504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.