FvH4_1g08430

RNA polymerase-associated protein CTR9 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016235
Physical Location & Seq
Forward (+)
4464531 .. 4472695
8165 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08430.t3

Sequence Viewer

Length: 3246 bp
ATGGCGTCAGTTTATATTCCGGTGCAGAATTCCGAGGAGGAAGTTAGGGTTGCTCTCGATCAGCTTCCCAGGGACGCTTCTGATATCCTTGATATTCTCAAGGCTGAGCAAGCTCCTCTCGATCTCTGGCTCATTATCGCGAGAGAGTACTTCAAGCAAGGGAAGCTAGAACAGTTTCGACAGATTTTGGAGGAAGGTTCGAGTCCTGAGATTGATGAGTATTATGCGGATGTTCGATACGAGAGGATTGCTATCTTGAATGCGTTGGGAGCCTATTACAGCTACCTTGGAAAGATTGAGACCAAGCAGAGAGAAAAGGAGGAGCATTTCATATTAGCGACACAGTTCTACAACAAAGCATCGAGAATCGACATTCATGAGCCTTCTACATGGGTTGGGAAAGGTCAACTTTTACTGGCTAAGGGTGAAGTAGACCAGGCGTTCAATGCGTTCAAGATTGTATTAGATGGAGACCGTGATAATGTCCCTTCCCTTTTGGGTCAGGCATGCGTTGAGTTTAATCGTGGGCAATTTTCTGATTCATTGGAGCTGTACAAGAGAGCCCTACAAGTGAATCCTGATTGTCCTGCGGCTGTGAGACTTGGCATCGGTCTCTGTCGTTACAAAATGGGTCAATTTGAAAAAGCTTGGCAGGCATTTCATCGGGTTTTAGAGGCAAATCCCGAAAATGTTGAGGCTCTTGTTGCTCTTGCAATTTTGGATTTGCATACCAATGCAGCTGCTGGGATAAGGAAAGGAATGGAAAAAATGCAGAGAGCTTTTGAGCTATATCCTTATTGTGCAATGGCCTTAAATTATCTGGCAAACCATTTTTTCTACACTGGTCAGCACTTTTTAGTTGAGCAACTTACTGAGACCGCACTTGCTGTCACCAACCATGGACCAACAAAGTCGCATTCCTACTACAATTTAGCACGATCTTACCATAGCAAGGGGGACTATGATAAGGCAGGAGTGTACTACATGGCATCCGTCAAGGAAATCAGTAAACCCCAAGAATTCATATTTCCTTACTATGGTCTGGGTCAAGTACAATTGAAGATGGGAGATCTTAAAAGTTCACTATCGAACTTTGAAAAGGTTTTGGAGATTTACCCTGATAATTGTGAGACACTGAAAGTCCTTGGTCACATCTATGTTCAGCTTGGGCAGACGGGGAAGGCATTGGAATTTATGAGGAAGGCTACAAAAATTGACCCAAATGATGCCCAGGCATTTCTTGATCTGGGAGAATTATTGATTTCATCTGATGCTGGAGCAGCTCAAGACTGCCTAAAAACTGCACGTAATCTTTTGAAGAAGGAAGGACAGGAGGTACCAATTGATGTTCTAAACAATCTTGGGGTTCTTCATTTTGAAAGGGGAGAATTTGAGCTTGCTCAACAAACTTTCAGGGAGGCACTAGGTGATGGAGTATGGGTGGCCTTCATTGATGGTAAAGAAAAAGCCCCATCTATCGATGCTGATGCATCTATTTTTCAATACAAGGACATGAACATGTTCCTTCAACTTGAGAAAGAAGGTCACTTAGTCGAATTACCTTGGAATAAAGTCACAACACTATTTAACCTTGCAAGACTACTTGAGCAATTACATAACACTGAAACGGCAGCCATATTTTACCGTTTGATTTTGTTCAAGTATCCAGACTATGTAGATGCTTATCTGAGGCTCGCTGCCCTTGCAAAAGCTCGAAATAATTTACAACTAAGCATTGAACTGGTTAATGATGCACTGAAGGTGAATAACAAGTCCCCAAATGCATTATTAATGCTTGGTGACTTGGAATTAAAAAATGATGACTGGGTTAAGGCAAAAGAGACCTTTCGGGCTGCTAGTGAAGCAACTGAGGGAAAGGATTCTTATGCCACTCTTTCTCTGGGAAACTGGAATTATTTTGCGGCAATTCGCAATGAGAAAAGAAATCCCAAGTTGGAAGCTACACATCTCGAAAAATCGAAAGAACTCTACACTAAAGTCCTGGCTCAACATTCTGCTAATTTATATGCTGCCAATGGTGCTGGAGTGGTCTTTGCAGAGAAGGGTCACTTTGATGTTTCTAAAGACATTTTTACACAAGTTCAAGAAGCTGCCAGTGGGAACATTTTTGTTCAGATGCCTGATGTATGGATAAATTTGGCACATGTTTATTTTGCTCAAGGCAATTTTCCCCTGGCTGTGAAAATGTATCAAAATTGCTTGAGGAAGTTCTTTAACAACACGGACTCCCAGATCCTACTGTATATTGCTCGTACACAGTATGAAGCGGAGCAGTGGCAAGACTGCAAGAAAACTTTAATGAGAGCCATTCATTTGGCACCTTCAAACTACACATTGAGGTTTGATGCAGGTGTTGTAATGCAGAAGTTCTCAGCTTCAACCTTACAAAAGTCAAAGAAATCTGTGGATGAGGTCCGGTCAACAGTTGCCGAGCTCGAAAATGCTGTTCGTTTATTTAAACAACTGTCTGCTGCTTCCAGCCTTCACTTTCATGGGTTTGATGAGAAAAAGATTGACACTCATGTTGAGTATTGCAGCCACTTGCTTGAGGCTGCAAGAGTTCATTTAACAGCAGCTGAGCATGAAGAGCAGAAGATTCGACAGAAACAAGAACTTGCTCGTCAGATGGCAATTGCTGAGGAAGCCCGTCGTAAGGCTGAAGAACAGAGGAAGTTCCAGTTGGAGAGGAGAATGCAAGAGGACGAACTAAAGCGAGTGAAACAACAGGAGGAGCATTTTGAGCGCATAAAGGAGCAATGGAAAAGTAGTACATCTGGTTCCAAGAGAAGGCCTTCAGATATAATTGATGATGAGGGTGGGCATAGTGAAAAGAGAAGGAGAAAAGGTGGAAAGAAGAGAAGGAAGGACAAGCACTCAAGGTCTCGTTATGAGACGGAGGAAGCAGAAGCTGAGCAGATGGACTATCAGGAAGCACCAGAAAATGAAGATGCTGACACACACTACAGGGAATCTGGTCATATGAATGAGCAGGATGACGAAGAGAATGCTCAAAATCCTCTTGAAGCAGTTGGCCTAGAAGATTCTGATGTTGAGGATGAGGCTGCACCAGCTGGTCGACGGAGGCGAGCATGGTCAGAATCTGATGATGATGAGGAGCAACAAGAGAGGCAGCCGGAGTCCAGTCCTAGGAGAGAAAATTCTGCAGATGTTCAGAGTGACGGAGAAGGTGATAAGCCAAATGGGGATCTTGATGATGAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000785 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016020 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035327 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_16 TPR_2 TPR_6 TPR_8

Protein Analysis

1082

Amino Acids

123.42

Weight (kDa)

5.4

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08430 FvH4_1g08430
malus_domestica MD02G1088500.v1.1
prunus_persica Prupe.7G201100_v2.0.a1 Prupe.7G201100_v2.0.a1
pyrus_communis pycom02g07110
rosa_chinensis RchiOBHm_Chr2g0094531
rosa_laevigata RLG00000016499
rosa_multiflora Rmu_sc0004359.1_g000042
rosa_roxburghii Rroxscaffold_2G00147090
rosa_rugosa Rorug02G0044500
rosa_samantha Rh2AG092800 Rh2BG093000 Rh2CG095500 Rh2DG091900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2360
Acc36I ACCTGC 1 cut(s) 2360
Acc65I GGTACC 1 cut(s) 1336
AccB1I GGYRCC 2 cut(s) 1336, 2338
AccI GTMKAC 2 cut(s) 432, 3097
AccII CGCG 1 cut(s) 140
AciI CCGC 5 cut(s) 227, 590, 879, 1922, 2288
AclWI GGATC 2 cut(s) 2248, 3234
AcsI RAATTY 6 cut(s) 28, 1019, 1190, 1388, 2155, 3178
AcuI CTGAAG 3 cut(s) 1778, 2700, 2799
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 1427
AfaI GTAC 7 cut(s) 149, 554, 980, 1053, 1338, 2275, 2791
AfiI CCNNNNNNNGG 5 cut(s) 952, 1037, 2674, 2808, 3168
AflIII ACRYGT 2 cut(s) 1518, 2164
AjnI CCWGG 5 cut(s) 68, 435, 1230, 2001, 2193
AjuI GAANNNNNNNTTGG 2 cut(s) 2684, 2716
Alw21I GWGCWC 1 cut(s) 2457
Alw26I GTCTC 9 cut(s) 293, 465, 592, 617, 869, 1124, 1835, 2906, 2907
AlwI GGATC 2 cut(s) 2248, 3234
AlwNI CAGNNNCTG 4 cut(s) 743, 2597, 2930, 3122
AoxI GGCC 4 cut(s) 807, 1443, 2810, 3052
ApoI RAATTY 6 cut(s) 28, 1019, 1190, 1388, 2155, 3178
AseI ATTAAT 1 cut(s) 1790
Asp700I GAANNNNTTC 4 cut(s) 174, 1520, 1879, 2812
Asp718I GGTACC 1 cut(s) 1336
AspA2I CCTAGG 1 cut(s) 3167
AspLEI GCGC 1 cut(s) 2766
AspS9I GGNCC 2 cut(s) 902, 2434
AsuHPI GGTGA 6 cut(s) 437, 883, 1439, 1774, 1811, 3221
AvaII GGWCC 2 cut(s) 902, 2434
AvrII CCTAGG 1 cut(s) 3167
BanI GGYRCC 2 cut(s) 1336, 2338
BanII GRGCYC 2 cut(s) 565, 2457
Bbv12I GWGCWC 1 cut(s) 2457
BbvCI CCTCAGC 1 cut(s) 2658
BccI CCATC 7 cut(s) 461, 1057, 1424, 1448, 1480, 2641, 2932
BceAI ACGGC 1 cut(s) 1644
BcgI CGANNNNNNTGC 8 cut(s) 230, 264, 1469, 1503, 2600, 2634, 3008, 3042
BciT130I CCWGG 5 cut(s) 70, 437, 1232, 2003, 2195
BciVI GTATCC 1 cut(s) 1674
BcoDI GTCTC 9 cut(s) 293, 465, 592, 617, 869, 1124, 1835, 2906, 2907
BfaI CTAG 5 cut(s) 167, 1424, 1857, 3056, 3168
BfmI CTRYAG 2 cut(s) 2983, 3183
BfuAI ACCTGC 1 cut(s) 2360
BfuI GTATCC 1 cut(s) 1674
BglII AGATCT 1 cut(s) 1069
BlnI CCTAGG 1 cut(s) 3167
BlpI GCTNAGC 3 cut(s) 105, 2598, 2931
BmcAI AGTACT 1 cut(s) 149
Bme1390I CCNGG 5 cut(s) 70, 437, 1232, 2003, 2195
Bme18I GGWCC 2 cut(s) 902, 2434
BmgT120I GGNCC 2 cut(s) 902, 2434
BmiI GGNNCC 4 cut(s) 271, 1338, 2340, 2800
BmrFI CCNGG 5 cut(s) 70, 437, 1232, 2003, 2195
BmrI ACTGGG 1 cut(s) 1834
BmuI ACTGGG 1 cut(s) 1834
BpmI CTGGAG 2 cut(s) 1296, 2064
Bpu10I CCTNAGC 2 cut(s) 420, 2658
Bpu1102I GCTNAGC 3 cut(s) 105, 2598, 2931
BpuEI CTTGAG 8 cut(s) 83, 1269, 1553, 1625, 2163, 2242, 2588, 2881
Bsa29I ATCGAT 1 cut(s) 1479
BsaAI YACGTR 1 cut(s) 1307
BsaBI GATNNNNATC 2 cut(s) 251, 1683
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 6 cut(s) 293, 465, 617, 869, 1835, 2907
BsaWI WCCGGW 2 cut(s) 19, 2436
BsaXI ACNNNNNCTCC 6 cut(s) 1425, 1455, 2231, 2261, 2851, 2881
Bsc4I CCNNNNNNNGG 5 cut(s) 952, 1037, 2674, 2808, 3168
Bse1I ACTGG 8 cut(s) 420, 847, 1746, 1829, 1913, 2115, 2698, 3162
Bse3DI GCAATG 3 cut(s) 810, 1939, 2783
Bse8I GATNNNNATC 2 cut(s) 251, 1683
BseBI CCWGG 5 cut(s) 70, 437, 1232, 2003, 2195
BseCI ATCGAT 1 cut(s) 1479
BseGI GGATG 5 cut(s) 235, 989, 2434, 3019, 3082
BseJI GATNNNNATC 2 cut(s) 251, 1683
BseLI CCNNNNNNNGG 5 cut(s) 952, 1037, 2674, 2808, 3168
BseMI GCAATG 3 cut(s) 810, 1939, 2783
BseMII CTCAG 9 cut(s) 96, 198, 864, 1679, 1860, 2406, 2589, 2649, 2922
BseNI ACTGG 8 cut(s) 420, 847, 1746, 1829, 1913, 2115, 2698, 3162
BseRI GAGGAG 6 cut(s) 50, 105, 335, 2722, 2765, 3149
BseYI CCCAGC 1 cut(s) 743
BsgI GTGCAG 3 cut(s) 44, 1287, 3069
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 4 cut(s) 809, 1445, 2812, 3054
BshNI GGYRCC 2 cut(s) 1336, 2338
BshVI ATCGAT 1 cut(s) 1479
BsiHKAI GWGCWC 1 cut(s) 2457
BsiSI CCGG 3 cut(s) 20, 2437, 3155
BslFI GGGAC 4 cut(s) 86, 470, 971, 1759
BslI CCNNNNNNNGG 5 cut(s) 952, 1037, 2674, 2808, 3168
BsmAI GTCTC 9 cut(s) 293, 465, 592, 617, 869, 1124, 1835, 2906, 2907
BsmBI CGTCTC 1 cut(s) 2906
BsmFI GGGAC 4 cut(s) 86, 470, 971, 1759
BsmI GAATGC 4 cut(s) 265, 916, 2718, 3031
BsnI GGCC 4 cut(s) 809, 1445, 2812, 3054
Bso31I GGTCTC 6 cut(s) 293, 465, 617, 869, 1835, 2907
Bsp1286I GDGCHC 2 cut(s) 565, 2457
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 7 cut(s) 58, 121, 938, 1069, 1243, 2253, 3226
Bsp1720I GCTNAGC 3 cut(s) 105, 2598, 2931
Bsp19I CCATGG 1 cut(s) 898
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 5 cut(s) 227, 590, 879, 1922, 2288
BspANI GGCC 4 cut(s) 809, 1445, 2812, 3054
BspCNI CTCAG 9 cut(s) 97, 199, 865, 1680, 1861, 2405, 2590, 2650, 2923
BspDI ATCGAT 1 cut(s) 1479
BspFNI CGCG 1 cut(s) 140
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 4 cut(s) 271, 1338, 2340, 2800
BspMAI CTGCAG 1 cut(s) 3187
BspMI ACCTGC 1 cut(s) 2360
BspPI GGATC 2 cut(s) 2248, 3234
BspQI GCTCTTC 1 cut(s) 2601
BspT107I GGYRCC 2 cut(s) 1336, 2338
BspTNI GGTCTC 6 cut(s) 293, 465, 617, 869, 1835, 2907
BsrDI GCAATG 3 cut(s) 810, 1939, 2783
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 8 cut(s) 420, 847, 1746, 1829, 1913, 2115, 2698, 3162
BssMI GATC 7 cut(s) 58, 121, 938, 1069, 1243, 2253, 3226
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 5 cut(s) 286, 898, 1144, 1562, 3167
Bst2UI CCWGG 5 cut(s) 70, 437, 1232, 2003, 2195
Bst4CI ACNGT 8 cut(s) 174, 345, 476, 1646, 2262, 2280, 2446, 2487
Bst6I CTCTTC 3 cut(s) 2601, 2870, 3015
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 552
BstBAI YACGTR 1 cut(s) 1307
BstC8I GCNNGC 6 cut(s) 111, 508, 654, 1398, 1695, 3108
BstDSI CCRYGG 1 cut(s) 898
BstF5I GGATG 5 cut(s) 235, 989, 2434, 3019, 3082
BstFNI CGCG 1 cut(s) 140
BstHHI GCGC 1 cut(s) 2766
BstKTI GATC 7 cut(s) 61, 124, 941, 1072, 1246, 2256, 3229
BstMAI GTCTC 9 cut(s) 293, 465, 592, 617, 869, 1124, 1835, 2906, 2907
BstMBI GATC 7 cut(s) 58, 121, 938, 1069, 1243, 2253, 3226
BstNI CCWGG 5 cut(s) 70, 437, 1232, 2003, 2195
BstNSI RCATGY 3 cut(s) 510, 1522, 2168
BstSCI CCNGG 5 cut(s) 68, 435, 1230, 2001, 2193
BstSFI CTRYAG 2 cut(s) 2983, 3183
BstUI CGCG 1 cut(s) 140
BstX2I RGATCY 3 cut(s) 1069, 2253, 3226
BstXI CCANNNNNNTGG 1 cut(s) 2335
BstYI RGATCY 3 cut(s) 1069, 2253, 3226
Bsu15I ATCGAT 1 cut(s) 1479
BsuI GTATCC 1 cut(s) 1674
BsuRI GGCC 4 cut(s) 809, 1445, 2812, 3054
BsuTUI ATCGAT 1 cut(s) 1479
BtgI CCRYGG 1 cut(s) 898
BtsCI GGATG 5 cut(s) 235, 989, 2434, 3019, 3082
BtsI GCAGTG 1 cut(s) 2300
BtsIMutI CAGTG 6 cut(s) 840, 1133, 1620, 1754, 2122, 2300
BtuMI TCGCGA 1 cut(s) 140
BveI ACCTGC 1 cut(s) 2360
Cac8I GCNNGC 6 cut(s) 111, 508, 654, 1398, 1695, 3108
CaiI CAGNNNCTG 4 cut(s) 743, 2597, 2930, 3122
CciI TCATGA 1 cut(s) 376
CfoI GCGC 1 cut(s) 2766
Cfr13I GGNCC 2 cut(s) 902, 2434
ClaI ATCGAT 1 cut(s) 1479
CseI GACGC 1 cut(s) 83
Csp6I GTAC 7 cut(s) 148, 553, 979, 1052, 1337, 2274, 2790
CviQI GTAC 7 cut(s) 148, 553, 979, 1052, 1337, 2274, 2790
DpnI GATC 7 cut(s) 60, 123, 940, 1071, 1245, 2255, 3228
DpnII GATC 7 cut(s) 58, 121, 938, 1069, 1243, 2253, 3226
DraI TTTAAA 1 cut(s) 2479
DraIII CACNNNGTG 1 cut(s) 1427
Eam1104I CTCTTC 3 cut(s) 2601, 2870, 3015
EarI CTCTTC 3 cut(s) 2601, 2870, 3015
Ecl136II GAGCTC 1 cut(s) 2455
Eco130I CCWWGG 5 cut(s) 286, 898, 1144, 1562, 3167
Eco147I AGGCCT 1 cut(s) 2812
Eco24I GRGCYC 2 cut(s) 565, 2457
Eco31I GGTCTC 6 cut(s) 293, 465, 617, 869, 1835, 2907
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 902, 2434
Eco53kI GAGCTC 1 cut(s) 2455
Eco57I CTGAAG 3 cut(s) 1778, 2700, 2799
EcoICRI GAGCTC 1 cut(s) 2455
EcoRI GAATTC 2 cut(s) 28, 1019
EcoRII CCWGG 5 cut(s) 68, 435, 1230, 2001, 2193
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 5 cut(s) 286, 898, 1144, 1562, 3167
EcoT22I ATGCAT 2 cut(s) 1492, 1786
EcoT38I GRGCYC 2 cut(s) 565, 2457
ErhI CCWWGG 5 cut(s) 286, 898, 1144, 1562, 3167
Esp3I CGTCTC 1 cut(s) 2906
FalI AAGNNNNNCTT 4 cut(s) 393, 425, 2054, 2086
FaqI GGGAC 4 cut(s) 86, 470, 971, 1759
FauNDI CATATG 1 cut(s) 3000
FblI GTMKAC 2 cut(s) 432, 3097
FokI GGATG 5 cut(s) 242, 976, 2441, 3026, 3089
FriOI GRGCYC 2 cut(s) 565, 2457
FspBI CTAG 5 cut(s) 167, 1424, 1857, 3056, 3168
GlaI GCGC 1 cut(s) 2765
GsaI CCCAGC 1 cut(s) 747
GsuI CTGGAG 2 cut(s) 1296, 2064
HaeIII GGCC 4 cut(s) 809, 1445, 2812, 3054
HapII CCGG 3 cut(s) 20, 2437, 3155
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 2766
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 2764
HinP1I GCGC 1 cut(s) 2764
HincII GTYRAC 3 cut(s) 407, 2442, 3098
HindII GTYRAC 3 cut(s) 407, 2442, 3098
HindIII AAGCTT 1 cut(s) 645
HpaII CCGG 3 cut(s) 20, 2437, 3155
HphI GGTGA 6 cut(s) 437, 883, 1439, 1774, 1811, 3221
Hpy166II GTNNAC 8 cut(s) 407, 433, 979, 1010, 1082, 2276, 2442, 3098
Hpy8I GTNNAC 8 cut(s) 407, 433, 979, 1010, 1082, 2276, 2442, 3098
Hpy99I CGWCG 2 cut(s) 2673, 3102
HpyCH4III ACNGT 8 cut(s) 174, 345, 476, 1646, 2262, 2280, 2446, 2487
HpyCH4IV ACGT 1 cut(s) 1306
HpySE526I ACGT 1 cut(s) 1306
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 2764
KpnI GGTACC 1 cut(s) 1340
Kzo9I GATC 7 cut(s) 58, 121, 938, 1069, 1243, 2253, 3226
LguI GCTCTTC 1 cut(s) 2601
LmnI GCTCC 9 cut(s) 118, 269, 322, 547, 1277, 2290, 2752, 2773, 3136
MaeI CTAG 5 cut(s) 167, 1424, 1857, 3056, 3168
MaeII ACGT 1 cut(s) 1306
MaeIII GTNAC 8 cut(s) 620, 889, 1148, 1544, 1573, 1799, 2066, 3197
MalI GATC 7 cut(s) 60, 123, 940, 1071, 1245, 2255, 3228
MboI GATC 7 cut(s) 58, 121, 938, 1069, 1243, 2253, 3226
MfeI CAATTG 3 cut(s) 1055, 1341, 2652
MflI RGATCY 3 cut(s) 1069, 2253, 3226
MhlI GDGCHC 2 cut(s) 565, 2457
MlyI GAGTC 3 cut(s) 211, 2240, 3167
MmeI TCCRAC 2 cut(s) 1935, 2682
Mph1103I ATGCAT 2 cut(s) 1492, 1786
MroXI GAANNNNTTC 4 cut(s) 174, 1520, 1879, 2812
MslI CAYNNNNRTG 6 cut(s) 732, 1155, 1517, 2073, 2511, 3003
MspA1I CMGCKG 3 cut(s) 740, 2597, 3092
MspI CCGG 3 cut(s) 20, 2437, 3155
MspR9I CCNGG 5 cut(s) 70, 437, 1232, 2003, 2195
MunI CAATTG 3 cut(s) 1055, 1341, 2652
Mva1269I GAATGC 4 cut(s) 265, 916, 2718, 3031
MvaI CCWGG 5 cut(s) 70, 437, 1232, 2003, 2195
MvnI CGCG 1 cut(s) 140
NcoI CCATGG 1 cut(s) 898
NdeI CATATG 1 cut(s) 3000
NdeII GATC 7 cut(s) 58, 121, 938, 1069, 1243, 2253, 3226
NlaIV GGNNCC 4 cut(s) 271, 1338, 2340, 2800
NmeAIII GCCGAG 1 cut(s) 2476
NmuCI GTSAC 7 cut(s) 889, 1148, 1544, 1573, 1799, 2066, 3197
NruI TCGCGA 1 cut(s) 140
NsiI ATGCAT 2 cut(s) 1492, 1786
NspI RCATGY 3 cut(s) 510, 1522, 2168
PaeI GCATGC 1 cut(s) 510
PagI TCATGA 1 cut(s) 376
PaqCI CACCTGC 1 cut(s) 2360
PasI CCCWGGG 1 cut(s) 69
PceI AGGCCT 1 cut(s) 2812
PciI ACATGT 2 cut(s) 1518, 2164
PciSI GCTCTTC 1 cut(s) 2601
PcsI WCGNNNNNNNCGW 1 cut(s) 3103
PctI GAATGC 4 cut(s) 265, 916, 2718, 3031
PdmI GAANNNNTTC 4 cut(s) 174, 1520, 1879, 2812
PfeI GAWTC 8 cut(s) 366, 539, 574, 1880, 2617, 2990, 3062, 3119
PleI GAGTC 3 cut(s) 210, 2240, 3166
PpsI GAGTC 3 cut(s) 210, 2240, 3166
Ppu21I YACGTR 1 cut(s) 1307
PscI ACATGT 2 cut(s) 1518, 2164
PshBI ATTAAT 1 cut(s) 1790
Psp124BI GAGCTC 1 cut(s) 2457
Psp6I CCWGG 5 cut(s) 68, 435, 1230, 2001, 2193
PspFI CCCAGC 1 cut(s) 743
PspGI CCWGG 5 cut(s) 68, 435, 1230, 2001, 2193
PspN4I GGNNCC 4 cut(s) 271, 1338, 2340, 2800
PspPI GGNCC 2 cut(s) 902, 2434
PsrI GAACNNNNNNTAC 2 cut(s) 2782, 2814
PstI CTGCAG 1 cut(s) 3187
PstNI CAGNNNCTG 4 cut(s) 743, 2597, 2930, 3122
PsuI RGATCY 3 cut(s) 1069, 2253, 3226
PvuII CAGCTG 3 cut(s) 740, 2597, 3092
RruI TCGCGA 1 cut(s) 140
RsaI GTAC 7 cut(s) 149, 554, 980, 1053, 1338, 2275, 2791
RsaNI GTAC 7 cut(s) 148, 553, 979, 1052, 1337, 2274, 2790
RseI CAYNNNNRTG 6 cut(s) 732, 1155, 1517, 2073, 2511, 3003
SacI GAGCTC 1 cut(s) 2457
SalI GTCGAC 1 cut(s) 3096
SapI GCTCTTC 1 cut(s) 2601
Sau3AI GATC 7 cut(s) 58, 121, 938, 1069, 1243, 2253, 3226
Sau96I GGNCC 2 cut(s) 902, 2434
ScaI AGTACT 1 cut(s) 149
SchI GAGTC 3 cut(s) 211, 2240, 3167
ScrFI CCNGG 5 cut(s) 70, 437, 1232, 2003, 2195
SduI GDGCHC 2 cut(s) 565, 2457
SfcI CTRYAG 2 cut(s) 2983, 3183
SinI GGWCC 2 cut(s) 902, 2434
SmiMI CAYNNNNRTG 6 cut(s) 732, 1155, 1517, 2073, 2511, 3003
SmlI CTYRAG 8 cut(s) 98, 1284, 1532, 1604, 2178, 2221, 2567, 2896
SmoI CTYRAG 8 cut(s) 98, 1284, 1532, 1604, 2178, 2221, 2567, 2896
SphI GCATGC 1 cut(s) 510
SseBI AGGCCT 1 cut(s) 2812
SsiI CCGC 5 cut(s) 227, 590, 879, 1922, 2288
SspMI CTAG 5 cut(s) 167, 1424, 1857, 3056, 3168
SstI GAGCTC 1 cut(s) 2457
StuI AGGCCT 1 cut(s) 2812
StyD4I CCNGG 5 cut(s) 68, 435, 1230, 2001, 2193
StyI CCWWGG 5 cut(s) 286, 898, 1144, 1562, 3167
TaaI ACNGT 8 cut(s) 174, 345, 476, 1646, 2262, 2280, 2446, 2487
TaiI ACGT 1 cut(s) 1309
TaqII GACCGA 1 cut(s) 599
TatI WGTACW 5 cut(s) 147, 552, 978, 1051, 2789
TauI GCSGC 2 cut(s) 593, 1925
TfiI GAWTC 8 cut(s) 366, 539, 574, 1880, 2617, 2990, 3062, 3119
TscAI CASTG 6 cut(s) 847, 1140, 1627, 1761, 2122, 2300
TseFI GTSAC 7 cut(s) 889, 1148, 1544, 1573, 1799, 2066, 3197
Tsp45I GTSAC 7 cut(s) 889, 1148, 1544, 1573, 1799, 2066, 3197
TspGWI ACGGA 5 cut(s) 982, 2258, 2930, 3115, 3216
TspRI CASTG 6 cut(s) 847, 1140, 1627, 1761, 2122, 2300
VpaK11BI GGWCC 2 cut(s) 902, 2434
VspI ATTAAT 1 cut(s) 1790
XapI RAATTY 6 cut(s) 28, 1019, 1190, 1388, 2155, 3178
XceI RCATGY 3 cut(s) 510, 1522, 2168
XcmI CCANNNNNNNNNTGG 1 cut(s) 1897
XmaJI CCTAGG 1 cut(s) 3167
XmiI GTMKAC 2 cut(s) 432, 3097
XmnI GAANNNNTTC 4 cut(s) 174, 1520, 1879, 2812
XspI CTAG 5 cut(s) 167, 1424, 1857, 3056, 3168
ZrmI AGTACT 1 cut(s) 149
Zsp2I ATGCAT 2 cut(s) 1492, 1786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.