RNA polymerase-associated protein CTR9 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g08430 FvH4_1g08430 |
| malus_domestica | MD02G1088500.v1.1 |
| prunus_persica | Prupe.7G201100_v2.0.a1 Prupe.7G201100_v2.0.a1 |
| pyrus_communis | pycom02g07110 |
| rosa_chinensis | RchiOBHm_Chr2g0094531 |
| rosa_laevigata | RLG00000016499 |
| rosa_multiflora | Rmu_sc0004359.1_g000042 |
| rosa_roxburghii | Rroxscaffold_2G00147090 |
| rosa_rugosa | Rorug02G0044500 |
| rosa_samantha | Rh2AG092800 Rh2BG093000 Rh2CG095500 Rh2DG091900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2360 |
| Acc16I | TGCGCA | 1 cut(s) | 802 |
| Acc36I | ACCTGC | 2 cut(s) | 2089, 2360 |
| AccB1I | GGYRCC | 1 cut(s) | 2338 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 187 |
| AccBSI | CCGCTC | 2 cut(s) | 1280, 3260 |
| AccII | CGCG | 3 cut(s) | 140, 2766, 2908 |
| AciI | CCGC | 9 cut(s) | 178, 590, 1280, 1922, 2437, 2841, 3124, 3234, 3258 |
| AclI | AACGTT | 1 cut(s) | 483 |
| AclWI | GGATC | 3 cut(s) | 66, 674, 3035 |
| AcoI | YGGCCR | 1 cut(s) | 1593 |
| AcsI | RAATTY | 5 cut(s) | 28, 1190, 1388, 2693, 3193 |
| AcuI | CTGAAG | 4 cut(s) | 1079, 1778, 2700, 2750 |
| AdeI | CACNNNGTG | 1 cut(s) | 1427 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 187, 663, 952, 1037, 1300, 2674 |
| AflIII | ACRYGT | 1 cut(s) | 2164 |
| AgeI | ACCGGT | 1 cut(s) | 19 |
| AjiI | CACGTC | 1 cut(s) | 1513 |
| AjnI | CCWGG | 4 cut(s) | 1230, 1562, 1590, 2794 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2684, 2716 |
| Alw21I | GWGCWC | 2 cut(s) | 1084, 1948 |
| Alw26I | GTCTC | 6 cut(s) | 293, 465, 617, 1652, 1684, 2734 |
| Alw44I | GTGCAC | 1 cut(s) | 1080 |
| AlwI | GGATC | 3 cut(s) | 66, 674, 3035 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 743, 2933, 3056, 3140 |
| Ama87I | CYCGRG | 1 cut(s) | 1604 |
| AoxI | GGCC | 7 cut(s) | 270, 561, 654, 807, 1182, 1593, 3255 |
| ApaI | GGGCCC | 1 cut(s) | 565 |
| ApaLI | GTGCAC | 1 cut(s) | 1080 |
| ApoI | RAATTY | 5 cut(s) | 28, 1190, 1388, 2693, 3193 |
| AseI | ATTAAT | 1 cut(s) | 1790 |
| AsiGI | ACCGGT | 1 cut(s) | 19 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1845 |
| AspA2I | CCTAGG | 1 cut(s) | 1246 |
| AspLEI | GCGC | 2 cut(s) | 803, 2766 |
| AspS9I | GGNCC | 4 cut(s) | 270, 561, 562, 902 |
| AsuC2I | CCSGG | 2 cut(s) | 476, 3171 |
| AsuHPI | GGTGA | 9 cut(s) | 437, 883, 1340, 1397, 1439, 1774, 1811, 2861, 3248 |
| AvaI | CYCGRG | 1 cut(s) | 1604 |
| AvaII | GGWCC | 1 cut(s) | 902 |
| AvrII | CCTAGG | 1 cut(s) | 1246 |
| BaeGI | GKGCMC | 5 cut(s) | 565, 1084, 1152, 1548, 1778 |
| BalI | TGGCCA | 1 cut(s) | 1595 |
| BanI | GGYRCC | 1 cut(s) | 2338 |
| BanII | GRGCYC | 2 cut(s) | 565, 1948 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2879, 2911 |
| Bbv12I | GWGCWC | 2 cut(s) | 1084, 1948 |
| BbvCI | CCTCAGC | 2 cut(s) | 2357, 2658 |
| BccI | CCATC | 9 cut(s) | 461, 1057, 1265, 1424, 1448, 1480, 2641, 2935, 3209 |
| BceAI | ACGGC | 1 cut(s) | 1317 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 569, 603, 2600, 2634 |
| BciT130I | CCWGG | 4 cut(s) | 1232, 1564, 1592, 2796 |
| BclI | TGATCA | 1 cut(s) | 433 |
| BcnI | CCSGG | 2 cut(s) | 476, 3171 |
| BcoDI | GTCTC | 6 cut(s) | 293, 465, 617, 1652, 1684, 2734 |
| BfaI | CTAG | 9 cut(s) | 335, 363, 677, 857, 1247, 1424, 1857, 2003, 2456 |
| BfmI | CTRYAG | 1 cut(s) | 3198 |
| BfuAI | ACCTGC | 2 cut(s) | 2089, 2360 |
| BglII | AGATCT | 1 cut(s) | 1069 |
| BlnI | CCTAGG | 1 cut(s) | 1246 |
| BlpI | GCTNAGC | 3 cut(s) | 1401, 2289, 2598 |
| Bme1390I | CCNGG | 6 cut(s) | 476, 1232, 1564, 1592, 2796, 3171 |
| Bme18I | GGWCC | 1 cut(s) | 902 |
| BmeT110I | CYCGRG | 1 cut(s) | 1604 |
| BmgBI | CACGTC | 1 cut(s) | 1513 |
| BmgT120I | GGNCC | 4 cut(s) | 270, 561, 562, 902 |
| BmiI | GGNNCC | 4 cut(s) | 271, 563, 2340, 2994 |
| BmrFI | CCNGG | 6 cut(s) | 476, 1232, 1564, 1592, 2796, 3171 |
| BmrI | ACTGGG | 1 cut(s) | 1834 |
| BmuI | ACTGGG | 1 cut(s) | 1834 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2485 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 98, 130 |
| BpmI | CTGGAG | 2 cut(s) | 993, 2064 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2357, 2658 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1401, 2289, 2598 |
| BpuEI | CTTGAG | 7 cut(s) | 188, 1037, 1553, 2163, 2242, 2588, 2884 |
| BpuMI | CCSGG | 2 cut(s) | 476, 3171 |
| BsaAI | YACGTR | 1 cut(s) | 1307 |
| BsaBI | GATNNNNATC | 2 cut(s) | 251, 1683 |
| BsaI | GGTCTC | 3 cut(s) | 293, 465, 617 |
| BsaWI | WCCGGW | 1 cut(s) | 19 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 182, 212, 2741, 2771, 2854, 2884 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 187, 663, 952, 1037, 1300, 2674 |
| Bse118I | RCCGGY | 1 cut(s) | 19 |
| Bse1I | ACTGG | 8 cut(s) | 847, 1698, 1746, 1829, 1913, 2115, 2964, 3004 |
| Bse3DI | GCAATG | 3 cut(s) | 810, 1939, 2783 |
| Bse8I | GATNNNNATC | 2 cut(s) | 251, 1683 |
| BseBI | CCWGG | 4 cut(s) | 1232, 1564, 1592, 2796 |
| BseGI | GGATG | 4 cut(s) | 574, 2833, 3025, 3088 |
| BseJI | GATNNNNATC | 2 cut(s) | 251, 1683 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 187, 663, 952, 1037, 1300, 2674 |
| BseMI | GCAATG | 3 cut(s) | 810, 1939, 2783 |
| BseNI | ACTGG | 8 cut(s) | 847, 1698, 1746, 1829, 1913, 2115, 2964, 3004 |
| BseRI | GAGGAG | 4 cut(s) | 50, 335, 2621, 2849 |
| BseSI | GKGCMC | 5 cut(s) | 565, 1084, 1152, 1548, 1778 |
| BseYI | CCCAGC | 1 cut(s) | 3056 |
| BsgI | GTGCAG | 2 cut(s) | 864, 3078 |
| Bsh1236I | CGCG | 3 cut(s) | 140, 2766, 2908 |
| BshFI | GGCC | 7 cut(s) | 272, 563, 656, 809, 1184, 1595, 3257 |
| BshNI | GGYRCC | 1 cut(s) | 2338 |
| BshTI | ACCGGT | 1 cut(s) | 19 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1084, 1948 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1604 |
| BsiSI | CCGG | 3 cut(s) | 20, 475, 3170 |
| BslFI | GGGAC | 3 cut(s) | 491, 971, 1059 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 187, 663, 952, 1037, 1300, 2674 |
| BsmAI | GTCTC | 6 cut(s) | 293, 465, 617, 1652, 1684, 2734 |
| BsmBI | CGTCTC | 1 cut(s) | 1652 |
| BsmFI | GGGAC | 3 cut(s) | 491, 971, 1059 |
| BsmI | GAATGC | 2 cut(s) | 265, 449 |
| BsnI | GGCC | 7 cut(s) | 272, 563, 656, 809, 1184, 1595, 3257 |
| Bso31I | GGTCTC | 3 cut(s) | 293, 465, 617 |
| BsoBI | CYCGRG | 1 cut(s) | 1604 |
| Bsp120I | GGGCCC | 1 cut(s) | 561 |
| Bsp1286I | GDGCHC | 6 cut(s) | 565, 1084, 1152, 1548, 1778, 1948 |
| Bsp1407I | TGTACA | 2 cut(s) | 12, 552 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1401, 2289, 2598 |
| Bsp19I | CCATGG | 1 cut(s) | 898 |
| Bsp68I | TCGCGA | 1 cut(s) | 140 |
| BspACI | CCGC | 9 cut(s) | 178, 590, 1280, 1922, 2437, 2841, 3124, 3234, 3258 |
| BspANI | GGCC | 7 cut(s) | 272, 563, 656, 809, 1184, 1595, 3257 |
| BspFNI | CGCG | 3 cut(s) | 140, 2766, 2908 |
| BspHI | TCATGA | 1 cut(s) | 376 |
| BspLI | GGNNCC | 4 cut(s) | 271, 563, 2340, 2994 |
| BspMAI | CTGCAG | 1 cut(s) | 3202 |
| BspMI | ACCTGC | 2 cut(s) | 2089, 2360 |
| BspPI | GGATC | 3 cut(s) | 66, 674, 3035 |
| BspQI | GCTCTTC | 1 cut(s) | 2777 |
| BspT107I | GGYRCC | 1 cut(s) | 2338 |
| BspTNI | GGTCTC | 3 cut(s) | 293, 465, 617 |
| BsrBI | CCGCTC | 2 cut(s) | 1280, 3260 |
| BsrDI | GCAATG | 3 cut(s) | 810, 1939, 2783 |
| BsrFI | RCCGGY | 1 cut(s) | 19 |
| BsrGI | TGTACA | 2 cut(s) | 12, 552 |
| BsrI | ACTGG | 8 cut(s) | 847, 1698, 1746, 1829, 1913, 2115, 2964, 3004 |
| BssAI | RCCGGY | 1 cut(s) | 19 |
| BssT1I | CCWWGG | 5 cut(s) | 68, 898, 1144, 1185, 1246 |
| Bst2UI | CCWGG | 4 cut(s) | 1232, 1564, 1592, 2796 |
| Bst4CI | ACNGT | 7 cut(s) | 524, 1257, 1646, 2446, 2484, 2757, 3112 |
| Bst6I | CTCTTC | 2 cut(s) | 2777, 3021 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 446 |
| BstAUI | TGTACA | 2 cut(s) | 12, 552 |
| BstBAI | YACGTR | 1 cut(s) | 1307 |
| BstC8I | GCNNGC | 9 cut(s) | 7, 111, 508, 654, 729, 1398, 1443, 2325, 3126 |
| BstDSI | CCRYGG | 2 cut(s) | 523, 898 |
| BstF5I | GGATG | 4 cut(s) | 574, 2833, 3025, 3088 |
| BstFNI | CGCG | 3 cut(s) | 140, 2766, 2908 |
| BstHHI | GCGC | 2 cut(s) | 803, 2766 |
| BstMAI | GTCTC | 6 cut(s) | 293, 465, 617, 1652, 1684, 2734 |
| BstNI | CCWGG | 4 cut(s) | 1232, 1564, 1592, 2796 |
| BstNSI | RCATGY | 3 cut(s) | 510, 731, 2168 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2485 |
| BstSCI | CCNGG | 6 cut(s) | 474, 1230, 1562, 1590, 2794, 3169 |
| BstSFI | CTRYAG | 1 cut(s) | 3198 |
| BstSLI | GKGCMC | 5 cut(s) | 565, 1084, 1152, 1548, 1778 |
| BstUI | CGCG | 3 cut(s) | 140, 2766, 2908 |
| BstX2I | RGATCY | 3 cut(s) | 679, 1069, 3040 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2148, 2335 |
| BstYI | RGATCY | 3 cut(s) | 679, 1069, 3040 |
| BsuRI | GGCC | 7 cut(s) | 272, 563, 656, 809, 1184, 1595, 3257 |
| BtgI | CCRYGG | 2 cut(s) | 523, 898 |
| BtrI | CACGTC | 1 cut(s) | 1513 |
| BtsCI | GGATG | 4 cut(s) | 574, 2833, 3025, 3088 |
| BtsI | GCAGTG | 1 cut(s) | 2300 |
| BtsIMutI | CAGTG | 3 cut(s) | 840, 2122, 2300 |
| BtuMI | TCGCGA | 1 cut(s) | 140 |
| BveI | ACCTGC | 2 cut(s) | 2089, 2360 |
| Cac8I | GCNNGC | 9 cut(s) | 7, 111, 508, 654, 729, 1398, 1443, 2325, 3126 |
| CaiI | CAGNNNCTG | 4 cut(s) | 743, 2933, 3056, 3140 |
| CciI | TCATGA | 1 cut(s) | 376 |
| CfoI | GCGC | 2 cut(s) | 803, 2766 |
| Cfr10I | RCCGGY | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 4 cut(s) | 270, 561, 562, 902 |
| CseI | GACGC | 2 cut(s) | 1139, 2755 |
| CsiI | ACCWGGT | 1 cut(s) | 2794 |
| CspAI | ACCGGT | 1 cut(s) | 19 |
| DraI | TTTAAA | 1 cut(s) | 2590 |
| DraIII | CACNNNGTG | 1 cut(s) | 1427 |
| EaeI | YGGCCR | 1 cut(s) | 1593 |
| Eam1104I | CTCTTC | 2 cut(s) | 2777, 3021 |
| EarI | CTCTTC | 2 cut(s) | 2777, 3021 |
| EciI | GGCGGA | 1 cut(s) | 167 |
| Ecl136II | GAGCTC | 1 cut(s) | 1946 |
| Eco130I | CCWWGG | 5 cut(s) | 68, 898, 1144, 1185, 1246 |
| Eco147I | AGGCCT | 2 cut(s) | 656, 1184 |
| Eco24I | GRGCYC | 2 cut(s) | 565, 1948 |
| Eco31I | GGTCTC | 3 cut(s) | 293, 465, 617 |
| Eco32I | GATATC | 1 cut(s) | 85 |
| Eco47I | GGWCC | 1 cut(s) | 902 |
| Eco53kI | GAGCTC | 1 cut(s) | 1946 |
| Eco57I | CTGAAG | 4 cut(s) | 1079, 1778, 2700, 2750 |
| Eco88I | CYCGRG | 1 cut(s) | 1604 |
| EcoICRI | GAGCTC | 1 cut(s) | 1946 |
| EcoO109I | RGGNCCY | 3 cut(s) | 270, 561, 562 |
| EcoRI | GAATTC | 1 cut(s) | 28 |
| EcoRII | CCWGG | 4 cut(s) | 1230, 1562, 1590, 2794 |
| EcoRV | GATATC | 1 cut(s) | 85 |
| EcoT14I | CCWWGG | 5 cut(s) | 68, 898, 1144, 1185, 1246 |
| EcoT22I | ATGCAT | 1 cut(s) | 1492 |
| EcoT38I | GRGCYC | 2 cut(s) | 565, 1948 |
| ErhI | CCWWGG | 5 cut(s) | 68, 898, 1144, 1185, 1246 |
| Esp3I | CGTCTC | 1 cut(s) | 1652 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 150, 182, 2054, 2086, 3030, 3062 |
| FaqI | GGGAC | 3 cut(s) | 491, 971, 1059 |
| FauI | CCCGC | 2 cut(s) | 2834, 3117 |
| FbaI | TGATCA | 1 cut(s) | 433 |
| FokI | GGATG | 4 cut(s) | 561, 2840, 3032, 3095 |
| FriOI | GRGCYC | 2 cut(s) | 565, 1948 |
| FspBI | CTAG | 9 cut(s) | 335, 363, 677, 857, 1247, 1424, 1857, 2003, 2456 |
| FspI | TGCGCA | 1 cut(s) | 802 |
| GlaI | GCGC | 2 cut(s) | 802, 2765 |
| GsaI | CCCAGC | 1 cut(s) | 3060 |
| GsuI | CTGGAG | 2 cut(s) | 993, 2064 |
| HaeIII | GGCC | 7 cut(s) | 272, 563, 656, 809, 1184, 1595, 3257 |
| HapII | CCGG | 3 cut(s) | 20, 475, 3170 |
| HgaI | GACGC | 2 cut(s) | 1139, 2755 |
| HhaI | GCGC | 2 cut(s) | 803, 2766 |
| Hin6I | GCGC | 2 cut(s) | 801, 2764 |
| HinP1I | GCGC | 2 cut(s) | 801, 2764 |
| HincII | GTYRAC | 1 cut(s) | 2442 |
| HindII | GTYRAC | 1 cut(s) | 2442 |
| HpaII | CCGG | 3 cut(s) | 20, 475, 3170 |
| HphI | GGTGA | 9 cut(s) | 437, 883, 1340, 1397, 1439, 1774, 1811, 2861, 3248 |
| Hpy166II | GTNNAC | 8 cut(s) | 13, 979, 1010, 1082, 1114, 2442, 2584, 2792 |
| Hpy8I | GTNNAC | 8 cut(s) | 13, 979, 1010, 1082, 1114, 2442, 2584, 2792 |
| Hpy99I | CGWCG | 2 cut(s) | 2673, 3120 |
| HpyCH4III | ACNGT | 7 cut(s) | 524, 1257, 1646, 2446, 2484, 2757, 3112 |
| HpyCH4IV | ACGT | 3 cut(s) | 483, 1306, 1512 |
| HpySE526I | ACGT | 3 cut(s) | 483, 1306, 1512 |
| HspAI | GCGC | 2 cut(s) | 801, 2764 |
| Ksp22I | TGATCA | 1 cut(s) | 433 |
| LguI | GCTCTTC | 1 cut(s) | 2777 |
| LmnI | GCTCC | 7 cut(s) | 322, 547, 1277, 1951, 2608, 2773, 2992 |
| MabI | ACCWGGT | 1 cut(s) | 2794 |
| MaeI | CTAG | 9 cut(s) | 335, 363, 677, 857, 1247, 1424, 1857, 2003, 2456 |
| MaeII | ACGT | 3 cut(s) | 483, 1306, 1512 |
| MbiI | CCGCTC | 2 cut(s) | 1280, 3260 |
| MfeI | CAATTG | 1 cut(s) | 1341 |
| MflI | RGATCY | 3 cut(s) | 679, 1069, 3040 |
| MhlI | GDGCHC | 6 cut(s) | 565, 1084, 1152, 1548, 1778, 1948 |
| MlsI | TGGCCA | 1 cut(s) | 1595 |
| MluNI | TGGCCA | 1 cut(s) | 1595 |
| MlyI | GAGTC | 2 cut(s) | 2240, 3187 |
| MmeI | TCCRAC | 2 cut(s) | 1935, 2682 |
| Mox20I | TGGCCA | 1 cut(s) | 1595 |
| Mph1103I | ATGCAT | 1 cut(s) | 1492 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1845 |
| MscI | TGGCCA | 1 cut(s) | 1595 |
| MseI | TTAA | 9 cut(s) | 1353, 1587, 1659, 1746, 1790, 1830, 2235, 2589, 3280 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2073, 2511 |
| Msp20I | TGGCCA | 1 cut(s) | 1595 |
| MspA1I | CMGCKG | 2 cut(s) | 740, 3056 |
| MspI | CCGG | 3 cut(s) | 20, 475, 3170 |
| MspR9I | CCNGG | 6 cut(s) | 476, 1232, 1564, 1592, 2796, 3171 |
| MunI | CAATTG | 1 cut(s) | 1341 |
| Mva1269I | GAATGC | 2 cut(s) | 265, 449 |
| MvaI | CCWGG | 4 cut(s) | 1232, 1564, 1592, 2796 |
| MvnI | CGCG | 3 cut(s) | 140, 2766, 2908 |
| NciI | CCSGG | 2 cut(s) | 476, 3171 |
| NcoI | CCATGG | 1 cut(s) | 898 |
| NlaIV | GGNNCC | 4 cut(s) | 271, 563, 2340, 2994 |
| NmeAIII | GCCGAG | 3 cut(s) | 130, 628, 3103 |
| NmuCI | GTSAC | 7 cut(s) | 889, 912, 1127, 1573, 1799, 2066, 2558 |
| NruI | TCGCGA | 1 cut(s) | 140 |
| NsbI | TGCGCA | 1 cut(s) | 802 |
| NsiI | ATGCAT | 1 cut(s) | 1492 |
| NspI | RCATGY | 3 cut(s) | 510, 731, 2168 |
| PaeI | GCATGC | 2 cut(s) | 510, 731 |
| PaeR7I | CTCGAG | 1 cut(s) | 1604 |
| PagI | TCATGA | 1 cut(s) | 376 |
| PaqCI | CACCTGC | 1 cut(s) | 2360 |
| PceI | AGGCCT | 2 cut(s) | 656, 1184 |
| PciI | ACATGT | 1 cut(s) | 2164 |
| PciSI | GCTCTTC | 1 cut(s) | 2777 |
| PctI | GAATGC | 2 cut(s) | 265, 449 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1845 |
| PfeI | GAWTC | 8 cut(s) | 366, 539, 1226, 1880, 2254, 2617, 3068, 3137 |
| PflFI | GACNNNGTC | 1 cut(s) | 910 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 187 |
| PinAI | ACCGGT | 1 cut(s) | 19 |
| PleI | GAGTC | 2 cut(s) | 2240, 3186 |
| PpsI | GAGTC | 2 cut(s) | 2240, 3186 |
| Ppu21I | YACGTR | 1 cut(s) | 1307 |
| PscI | ACATGT | 1 cut(s) | 2164 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2485 |
| PshBI | ATTAAT | 1 cut(s) | 1790 |
| Psp124BI | GAGCTC | 1 cut(s) | 1948 |
| Psp1406I | AACGTT | 1 cut(s) | 483 |
| Psp6I | CCWGG | 4 cut(s) | 1230, 1562, 1590, 2794 |
| PspFI | CCCAGC | 1 cut(s) | 3056 |
| PspGI | CCWGG | 4 cut(s) | 1230, 1562, 1590, 2794 |
| PspN4I | GGNNCC | 4 cut(s) | 271, 563, 2340, 2994 |
| PspOMI | GGGCCC | 1 cut(s) | 561 |
| PspPI | GGNCC | 4 cut(s) | 270, 561, 562, 902 |
| PspXI | VCTCGAGB | 1 cut(s) | 1604 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2782, 2814 |
| PstI | CTGCAG | 1 cut(s) | 3202 |
| PstNI | CAGNNNCTG | 4 cut(s) | 743, 2933, 3056, 3140 |
| PsuI | RGATCY | 3 cut(s) | 679, 1069, 3040 |
| PsyI | GACNNNGTC | 1 cut(s) | 910 |
| PvuII | CAGCTG | 2 cut(s) | 740, 3056 |
| RruI | TCGCGA | 1 cut(s) | 140 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2073, 2511 |
| SacI | GAGCTC | 1 cut(s) | 1948 |
| SapI | GCTCTTC | 1 cut(s) | 2777 |
| SaqAI | TTAA | 9 cut(s) | 1353, 1587, 1659, 1746, 1790, 1830, 2235, 2589, 3280 |
| Sau96I | GGNCC | 4 cut(s) | 270, 561, 562, 902 |
| SchI | GAGTC | 2 cut(s) | 2240, 3187 |
| ScrFI | CCNGG | 6 cut(s) | 476, 1232, 1564, 1592, 2796, 3171 |
| SduI | GDGCHC | 6 cut(s) | 565, 1084, 1152, 1548, 1778, 1948 |
| SexAI | ACCWGGT | 1 cut(s) | 2794 |
| SfcI | CTRYAG | 1 cut(s) | 3198 |
| Sfr274I | CTCGAG | 1 cut(s) | 1604 |
| SinI | GGWCC | 1 cut(s) | 902 |
| SlaI | CTCGAG | 1 cut(s) | 1604 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2073, 2511 |
| SmlI | CTYRAG | 8 cut(s) | 167, 1016, 1532, 1604, 2178, 2221, 2567, 2899 |
| SmoI | CTYRAG | 8 cut(s) | 167, 1016, 1532, 1604, 2178, 2221, 2567, 2899 |
| SphI | GCATGC | 2 cut(s) | 510, 731 |
| SseBI | AGGCCT | 2 cut(s) | 656, 1184 |
| SsiI | CCGC | 9 cut(s) | 178, 590, 1280, 1922, 2437, 2841, 3124, 3234, 3258 |
| SspMI | CTAG | 9 cut(s) | 335, 363, 677, 857, 1247, 1424, 1857, 2003, 2456 |
| SstI | GAGCTC | 1 cut(s) | 1948 |
| StuI | AGGCCT | 2 cut(s) | 656, 1184 |
| StyD4I | CCNGG | 6 cut(s) | 474, 1230, 1562, 1590, 2794, 3169 |
| StyI | CCWWGG | 5 cut(s) | 68, 898, 1144, 1185, 1246 |
| TaaI | ACNGT | 7 cut(s) | 524, 1257, 1646, 2446, 2484, 2757, 3112 |
| TaiI | ACGT | 3 cut(s) | 486, 1309, 1515 |
| TaqI | TCGA | 9 cut(s) | 90, 120, 235, 369, 1554, 1605, 1714, 3115, 3176 |
| TaqII | GACCGA | 1 cut(s) | 919 |
| TatI | WGTACW | 5 cut(s) | 12, 552, 571, 978, 2789 |
| TauI | GCSGC | 4 cut(s) | 593, 1283, 1925, 3260 |
| TfiI | GAWTC | 8 cut(s) | 366, 539, 1226, 1880, 2254, 2617, 3068, 3137 |
| Tru1I | TTAA | 9 cut(s) | 1353, 1587, 1659, 1746, 1790, 1830, 2235, 2589, 3280 |
| Tru9I | TTAA | 9 cut(s) | 1353, 1587, 1659, 1746, 1790, 1830, 2235, 2589, 3280 |
| TscAI | CASTG | 3 cut(s) | 847, 2122, 2300 |
| TseFI | GTSAC | 7 cut(s) | 889, 912, 1127, 1573, 1799, 2066, 2558 |
| Tsp45I | GTSAC | 7 cut(s) | 889, 912, 1127, 1573, 1799, 2066, 2558 |
| TspGWI | ACGGA | 1 cut(s) | 3223 |
| TspRI | CASTG | 3 cut(s) | 847, 2122, 2300 |
| Tth111I | GACNNNGTC | 1 cut(s) | 910 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 187 |
| VneI | GTGCAC | 1 cut(s) | 1080 |
| VpaK11BI | GGWCC | 1 cut(s) | 902 |
| VspI | ATTAAT | 1 cut(s) | 1790 |
| XapI | RAATTY | 5 cut(s) | 28, 1190, 1388, 2693, 3193 |
| XbaI | TCTAGA | 1 cut(s) | 362 |
| XceI | RCATGY | 3 cut(s) | 510, 731, 2168 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1897 |
| XhoI | CTCGAG | 1 cut(s) | 1604 |
| XmaJI | CCTAGG | 1 cut(s) | 1246 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1845 |
| XspI | CTAG | 9 cut(s) | 335, 363, 677, 857, 1247, 1424, 1857, 2003, 2456 |
| Zsp2I | ATGCAT | 1 cut(s) | 1492 |