Rmu_sc0004359.1_g000042

RNA polymerase-associated protein CTR9 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004359.1
OG0016235
Physical Location & Seq
Reverse (-)
180744 .. 188869
8126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004359.1_g000042.1.cds

Sequence Viewer

Length: 3258 bp
atggcgtcagtttatataccggtgcagaattcggaggaggaggttagggttgctctcgatcagcttcctagggacgcttcggatatcctcgatatcctcaaggccgagcaagcccctctcgatctctggctcattatcgcgagagagtatttcaagcaagggaaactagaacagtttcgccagattttggaggaggggtctagtcctgagattgatgagtattatgcggatgttcggtacgagaggattgctattttgaatgcattaggggcctattacagctaccttggaaagattgagacgaaacagagagaaaaggaggagcatttcattttagccacacagttttacaataaagcatcaagaatagacattcatgagccttctacgtgggttgggaaaggtcagcttttactggccaagggtgaagtagatcaggcatttaatgcgttcaagattgtattagatggagaccgtgataacgtcccttcccttttgggtcaggcatgcgttgagtttaatcgtgggcagtattctgattcattggagctgtacaagagagccctgcaagtgaatcccaattgtcctgcggctgtgagacttggcattggtctctgtcgttacaaaatgggtcaatttgaaaaagcttggcaggcatttcagcgggttttacagttagatcctgaaaatgttgaggctcttgttgctcttgcaattttggatttgcatactaatgcagctgctggaataaggaaaggaatggaaaaaatgcagagagcttttgagctatacccttattgtgcaatggccttaaactatctggcaaaccattttttctacactggtcagcactttttagttgagcaacttactgagactgcacttgctgtcaccaaccatggaccaacaaagtcgcattcctactacaatttagcacgatcttaccatagcaagggggactatgataaggcaggagtgtactacatggcatctgtcaaggaaatcagtaaaccccaagaattcatatttccttattatggtttgggacaagtacaactgaagatgggagatcttaaaagttcactgtcgaactttgaaaaggtcttggagatttaccctgataattgtgagacactgaaagctcttggtcacatatatgttcagcttgggcagacagggaaggcattggaatttatgaggaaggctacaaaaattgacccaaatgatgcccaggcatttcttgatctgggagaattattgatttcatctgatgctgtagcagctcaggactgcctaaaaactgcacgtaatcttttgaagaagggaggtcaggaggtaccaatcgatgttcttaacaatcttggggtacttcattttgaaaggggagaatttgagcttgctcaacaaactttcagagaggcactaggtgatggaatatgggtggccttcattgatggtaaagaaaaagccccatctgttgatgatgatgcatctatttttcaatacaaggacatgcaaatattccatcaacttgagaaagaaggtcacttagtcgaattaccttggaataaagtcacaacactatttaaccttgccagactacttgagcaattacacaacactgaaacggcaagcttattttaccgtttgattttgttcaagtatccagactatgtagatgcttatctgagacttgctggccttgcaaaagctcgaaataatttacaactaagcattgaactggttaatgatgcactgaaggtgaataacaagtccccaaatgcattattgatgcttggtgatttggaattaaaaaatgatgactgggttaaggcaaaagagacctttcgggctgctagtgaagcaactgagggaaaggattcctatgccactctttctctgggaaactggaactattttgctgcaattcgcaatgagaaaagaaatcccaagttggaagctacacatctggaaaaatcaaaagaactctacactaaagtcctggctcaacattctgctaatttatatgctgccaatggtgctggagtggtctttgcagagaagggtcactttgatgtttcaaaagacatttttacacaggttcaagaagctgccagtgggaacatttttgttcagatgcctgatgtatggataaatttggcacatgtttattttgctcaaggaaattttcccttggctgtgaaaatgtatcaaaactgcttgaggaagttctttaacaacacggactctcagatcctactgtatatagcccgtacacattatgaagcggagcagtggcaagactgcaaaaaaactttaatgagagccattcatttggcaccttcaaactacacatttaggtttgatgcaggtgttgtgatgcaaaagttctcagcttcaaccttacaaaaaccaaaaaaatctgtggatgaggtccggtcaacagttgcagagctagaaaatgctgttcgtttatttagacaactgtctgctgcttccagccttcactttcatgggtttgatgagaaaaagattgacactcatgttgagtactgcagccacttgcttgaggctgcaagagttcatttaacagcagctgagcatgaagagcagaaggttcggcagaaacaagaacttgctcgtcagatggcaattgctgaggaagctcgtcgtaaggctgaagaacagaggaagttccagttggagaggagaatgcaagaggacgaactaaagcgagtgagacaacaggaggagcattttgagcgcataaaggagcaatggaagagtagtacatctggttctaagcggaggccttcagatatggatgatgaggacggtgggcatagtgaaaagagaaggagaaaaggtggaaagaagagaaagaaggacaagtactcaaggtcgcgttatgaaacggaggaagcagaagctgagcagatggactatcaggaagcaccggaaattgaagatgctaacacaaactaccaggagtccccaggtcatatgaatgagcaggatgatgaagagaatgctcaaaatcctcttgaagcagcttttggcattgaagattctgatgttgaggatgaggttgcacctgcaggtcgacggaggcgggcatggtcggaatccgatgatgatgatgagcagcaagagaggcagccggagtccagtcctagaagagaaaattctgcagatgttcagagtgatggaggagaaggtggtgataagccgaatggggatcttgatgatgaggattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000785 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016020 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035327 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_16 TPR_2 TPR_6 TPR_8

Protein Analysis

1085

Amino Acids

123.86

Weight (kDa)

5.37

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08430 FvH4_1g08430
malus_domestica MD02G1088500.v1.1
prunus_persica Prupe.7G201100_v2.0.a1 Prupe.7G201100_v2.0.a1
pyrus_communis pycom02g07110
rosa_chinensis RchiOBHm_Chr2g0094531
rosa_laevigata RLG00000016499
rosa_multiflora Rmu_sc0004359.1_g000042
rosa_roxburghii Rroxscaffold_2G00147090
rosa_rugosa Rorug02G0044500
rosa_samantha Rh2AG092800 Rh2BG093000 Rh2CG095500 Rh2DG091900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 2360, 3103
Acc36I ACCTGC 3 cut(s) 2360, 3089, 3103
Acc65I GGTACC 1 cut(s) 1336
AccB1I GGYRCC 2 cut(s) 1336, 2338
AccB7I CCANNNNNTGG 1 cut(s) 187
AccI GTMKAC 1 cut(s) 3103
AccII CGCG 2 cut(s) 140, 2905
AciI CCGC 6 cut(s) 227, 590, 664, 2288, 2806, 3112
AclWI GGATC 3 cut(s) 674, 2248, 3246
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 7 cut(s) 28, 1019, 1190, 1388, 2155, 2185, 3184
AcuI CTGAAG 4 cut(s) 1079, 1778, 2700, 2799
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 1427
AfiI CCNNNNNNNGG 3 cut(s) 187, 952, 1037
AflIII ACRYGT 1 cut(s) 2164
AgeI ACCGGT 1 cut(s) 19
AjnI CCWGG 4 cut(s) 1230, 2001, 2985, 2995
AjuI GAANNNNNNNTTGG 4 cut(s) 2684, 2716, 3039, 3071
Alw26I GTCTC 9 cut(s) 293, 465, 592, 617, 869, 1124, 1684, 1835, 2734
AlwI GGATC 3 cut(s) 674, 2248, 3246
AlwNI CAGNNNCTG 3 cut(s) 743, 2597, 2930
AoxI GGCC 7 cut(s) 102, 270, 417, 807, 1443, 1699, 2810
ApoI RAATTY 7 cut(s) 28, 1019, 1190, 1388, 2155, 2185, 3184
AsiGI ACCGGT 1 cut(s) 19
Asp700I GAANNNNTTC 2 cut(s) 174, 1879
Asp718I GGTACC 1 cut(s) 1336
AspA2I CCTAGG 1 cut(s) 68
AspLEI GCGC 1 cut(s) 2766
AspS9I GGNCC 3 cut(s) 270, 902, 2434
AsuHPI GGTGA 6 cut(s) 437, 883, 1439, 1774, 1811, 3233
AvaII GGWCC 2 cut(s) 902, 2434
AvrII CCTAGG 1 cut(s) 68
BalI TGGCCA 1 cut(s) 419
BanI GGYRCC 2 cut(s) 1336, 2338
BanII GRGCYC 1 cut(s) 565
BarI GAAGNNNNNNTAC 2 cut(s) 2876, 2908
BbvCI CCTCAGC 1 cut(s) 2658
BccI CCATC 9 cut(s) 461, 1057, 1424, 1448, 1480, 1533, 2641, 2932, 3200
BceAI ACGGC 1 cut(s) 1644
BcgI CGANNNNNNTGC 4 cut(s) 230, 264, 2600, 2634
BciT130I CCWGG 4 cut(s) 1232, 2003, 2987, 2997
BciVI GTATCC 1 cut(s) 1674
BcoDI GTCTC 9 cut(s) 293, 465, 592, 617, 869, 1124, 1684, 1835, 2734
BfaI CTAG 7 cut(s) 69, 167, 201, 1424, 1857, 2456, 3174
BfmI CTRYAG 4 cut(s) 1275, 2554, 3096, 3189
BfuAI ACCTGC 3 cut(s) 2360, 3089, 3103
BfuI GTATCC 1 cut(s) 1674
BglII AGATCT 1 cut(s) 1069
BlnI CCTAGG 1 cut(s) 68
BlpI GCTNAGC 2 cut(s) 2598, 2931
BmcAI AGTACT 2 cut(s) 2552, 2894
Bme1390I CCNGG 4 cut(s) 1232, 2003, 2987, 2997
Bme18I GGWCC 2 cut(s) 902, 2434
BmgT120I GGNCC 3 cut(s) 270, 902, 2434
BmiI GGNNCC 3 cut(s) 271, 1338, 2340
BmrFI CCNGG 4 cut(s) 1232, 2003, 2987, 2997
BmrI ACTGGG 1 cut(s) 1834
BmuI ACTGGG 1 cut(s) 1834
BoxI GACNNNNGTC 1 cut(s) 2485
BpmI CTGGAG 1 cut(s) 2064
Bpu10I CCTNAGC 2 cut(s) 1284, 2658
Bpu1102I GCTNAGC 2 cut(s) 2598, 2931
BpuEI CTTGAG 7 cut(s) 83, 1553, 1625, 2163, 2242, 2588, 2881
Bsa29I ATCGAT 1 cut(s) 1344
BsaAI YACGTR 2 cut(s) 390, 1307
BsaBI GATNNNNATC 1 cut(s) 1683
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 3 cut(s) 465, 617, 1835
BsaJI CCNNGG 8 cut(s) 68, 286, 420, 898, 1230, 1562, 2193, 2995
BsaWI WCCGGW 3 cut(s) 19, 2436, 2956
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 2851, 2881
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 952, 1037
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 8 cut(s) 420, 847, 1746, 1829, 1913, 2115, 2698, 3168
Bse3DI GCAATG 3 cut(s) 810, 1939, 2783
Bse8I GATNNNNATC 1 cut(s) 1683
BseBI CCWGG 4 cut(s) 1232, 2003, 2987, 2997
BseCI ATCGAT 1 cut(s) 1344
BseDI CCNNGG 8 cut(s) 68, 286, 420, 898, 1230, 1562, 2193, 2995
BseGI GGATG 5 cut(s) 235, 2434, 2830, 3022, 3088
BseJI GATNNNNATC 1 cut(s) 1683
BseLI CCNNNNNNNGG 3 cut(s) 187, 952, 1037
BseMI GCAATG 3 cut(s) 810, 1939, 2783
BseNI ACTGG 8 cut(s) 420, 847, 1746, 1829, 1913, 2115, 2698, 3168
BseRI GAGGAG 7 cut(s) 50, 53, 206, 335, 2722, 2765, 3225
BsgI GTGCAG 3 cut(s) 44, 864, 1287
Bsh1236I CGCG 2 cut(s) 140, 2905
BshFI GGCC 7 cut(s) 104, 272, 419, 809, 1445, 1701, 2812
BshNI GGYRCC 2 cut(s) 1336, 2338
BshTI ACCGGT 1 cut(s) 19
BshVI ATCGAT 1 cut(s) 1344
BsiSI CCGG 4 cut(s) 20, 2437, 2957, 3161
BslFI GGGAC 6 cut(s) 86, 470, 971, 1059, 1759, 2977
BslI CCNNNNNNNGG 3 cut(s) 187, 952, 1037
BsmAI GTCTC 9 cut(s) 293, 465, 592, 617, 869, 1124, 1684, 1835, 2734
BsmBI CGTCTC 1 cut(s) 293
BsmFI GGGAC 6 cut(s) 86, 470, 971, 1059, 1759, 2977
BsmI GAATGC 4 cut(s) 265, 916, 2718, 3034
BsnI GGCC 7 cut(s) 104, 272, 419, 809, 1445, 1701, 2812
Bso31I GGTCTC 3 cut(s) 465, 617, 1835
Bsp1286I GDGCHC 1 cut(s) 565
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 9 cut(s) 58, 121, 433, 679, 938, 1069, 1243, 2253, 3238
Bsp1720I GCTNAGC 2 cut(s) 2598, 2931
Bsp19I CCATGG 1 cut(s) 898
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 6 cut(s) 227, 590, 664, 2288, 2806, 3112
BspANI GGCC 7 cut(s) 104, 272, 419, 809, 1445, 1701, 2812
BspDI ATCGAT 1 cut(s) 1344
BspFNI CGCG 2 cut(s) 140, 2905
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 271, 1338, 2340
BspMAI CTGCAG 3 cut(s) 2558, 3100, 3193
BspMI ACCTGC 3 cut(s) 2360, 3089, 3103
BspPI GGATC 3 cut(s) 674, 2248, 3246
BspQI GCTCTTC 1 cut(s) 2601
BspT107I GGYRCC 2 cut(s) 1336, 2338
BspTNI GGTCTC 3 cut(s) 465, 617, 1835
BsrDI GCAATG 3 cut(s) 810, 1939, 2783
BsrFI RCCGGY 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 8 cut(s) 420, 847, 1746, 1829, 1913, 2115, 2698, 3168
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 8 cut(s) 68, 286, 420, 898, 1230, 1562, 2193, 2995
BssMI GATC 9 cut(s) 58, 121, 433, 679, 938, 1069, 1243, 2253, 3238
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 6 cut(s) 68, 286, 420, 898, 1562, 2193
Bst2UI CCWGG 4 cut(s) 1232, 2003, 2987, 2997
Bst6I CTCTTC 5 cut(s) 2601, 2777, 2870, 3018, 3172
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 446
BstAUI TGTACA 1 cut(s) 552
BstBAI YACGTR 2 cut(s) 390, 1307
BstC8I GCNNGC 7 cut(s) 111, 508, 654, 1398, 1633, 1699, 3114
BstDSI CCRYGG 1 cut(s) 898
BstF5I GGATG 5 cut(s) 235, 2434, 2830, 3022, 3088
BstFNI CGCG 2 cut(s) 140, 2905
BstHHI GCGC 1 cut(s) 2766
BstKTI GATC 9 cut(s) 61, 124, 436, 682, 941, 1072, 1246, 2256, 3241
BstMAI GTCTC 9 cut(s) 293, 465, 592, 617, 869, 1124, 1684, 1835, 2734
BstMBI GATC 9 cut(s) 58, 121, 433, 679, 938, 1069, 1243, 2253, 3238
BstNI CCWGG 4 cut(s) 1232, 2003, 2987, 2997
BstNSI RCATGY 3 cut(s) 510, 1516, 2168
BstPAI GACNNNNGTC 1 cut(s) 2485
BstSCI CCNGG 4 cut(s) 1230, 2001, 2985, 2995
BstSFI CTRYAG 4 cut(s) 1275, 2554, 3096, 3189
BstUI CGCG 2 cut(s) 140, 2905
BstX2I RGATCY 4 cut(s) 679, 1069, 2253, 3238
BstXI CCANNNNNNTGG 1 cut(s) 2335
BstYI RGATCY 4 cut(s) 679, 1069, 2253, 3238
Bsu15I ATCGAT 1 cut(s) 1344
BsuI GTATCC 1 cut(s) 1674
BsuRI GGCC 7 cut(s) 104, 272, 419, 809, 1445, 1701, 2812
BsuTUI ATCGAT 1 cut(s) 1344
BtgI CCRYGG 1 cut(s) 898
BtsCI GGATG 5 cut(s) 235, 2434, 2830, 3022, 3088
BtsI GCAGTG 1 cut(s) 2300
BtsIMutI CAGTG 7 cut(s) 840, 1082, 1133, 1620, 1754, 2122, 2300
BtuMI TCGCGA 1 cut(s) 140
BveI ACCTGC 3 cut(s) 2360, 3089, 3103
Cac8I GCNNGC 7 cut(s) 111, 508, 654, 1398, 1633, 1699, 3114
CaiI CAGNNNCTG 3 cut(s) 743, 2597, 2930
CciI TCATGA 1 cut(s) 376
CfoI GCGC 1 cut(s) 2766
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 3 cut(s) 270, 902, 2434
ClaI ATCGAT 1 cut(s) 1344
CseI GACGC 1 cut(s) 83
CspAI ACCGGT 1 cut(s) 19
DpnI GATC 9 cut(s) 60, 123, 435, 681, 940, 1071, 1245, 2255, 3240
DpnII GATC 9 cut(s) 58, 121, 433, 679, 938, 1069, 1243, 2253, 3238
DraIII CACNNNGTG 1 cut(s) 1427
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 5 cut(s) 2601, 2777, 2870, 3018, 3172
EarI CTCTTC 5 cut(s) 2601, 2777, 2870, 3018, 3172
Eco130I CCWWGG 6 cut(s) 68, 286, 420, 898, 1562, 2193
Eco147I AGGCCT 1 cut(s) 2812
Eco24I GRGCYC 1 cut(s) 565
Eco31I GGTCTC 3 cut(s) 465, 617, 1835
Eco32I GATATC 2 cut(s) 85, 94
Eco47I GGWCC 2 cut(s) 902, 2434
Eco57I CTGAAG 4 cut(s) 1079, 1778, 2700, 2799
EcoO109I RGGNCCY 1 cut(s) 270
EcoRI GAATTC 2 cut(s) 28, 1019
EcoRII CCWGG 4 cut(s) 1230, 2001, 2985, 2995
EcoRV GATATC 2 cut(s) 85, 94
EcoT14I CCWWGG 6 cut(s) 68, 286, 420, 898, 1562, 2193
EcoT22I ATGCAT 3 cut(s) 265, 1492, 1786
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 6 cut(s) 68, 286, 420, 898, 1562, 2193
Esp3I CGTCTC 1 cut(s) 293
FalI AAGNNNNNCTT 4 cut(s) 393, 425, 2054, 2086
FaqI GGGAC 6 cut(s) 86, 470, 971, 1059, 1759, 2977
FauI CCCGC 2 cut(s) 657, 3105
FauNDI CATATG 1 cut(s) 3003
FblI GTMKAC 1 cut(s) 3103
FokI GGATG 5 cut(s) 242, 2441, 2837, 3029, 3095
FriOI GRGCYC 1 cut(s) 565
FspBI CTAG 7 cut(s) 69, 167, 201, 1424, 1857, 2456, 3174
GlaI GCGC 1 cut(s) 2765
GsuI CTGGAG 1 cut(s) 2064
HaeIII GGCC 7 cut(s) 104, 272, 419, 809, 1445, 1701, 2812
HapII CCGG 4 cut(s) 20, 2437, 2957, 3161
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 2766
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 2764
HinP1I GCGC 1 cut(s) 2764
HincII GTYRAC 2 cut(s) 2442, 3104
HindII GTYRAC 2 cut(s) 2442, 3104
HindIII AAGCTT 2 cut(s) 645, 1633
HinfI GANTC 8 cut(s) 539, 574, 1880, 2246, 2990, 3068, 3125, 3164
HpaII CCGG 4 cut(s) 20, 2437, 2957, 3161
HphI GGTGA 6 cut(s) 437, 883, 1439, 1774, 1811, 3233
Hpy166II GTNNAC 6 cut(s) 979, 1010, 1082, 2276, 2442, 3104
Hpy8I GTNNAC 6 cut(s) 979, 1010, 1082, 2276, 2442, 3104
Hpy99I CGWCG 2 cut(s) 2673, 3108
HpyCH4IV ACGT 3 cut(s) 389, 483, 1306
HpySE526I ACGT 3 cut(s) 389, 483, 1306
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 2764
KpnI GGTACC 1 cut(s) 1340
Kzo9I GATC 9 cut(s) 58, 121, 433, 679, 938, 1069, 1243, 2253, 3238
LguI GCTCTTC 1 cut(s) 2601
LmnI GCTCC 5 cut(s) 322, 547, 2290, 2752, 2773
MaeI CTAG 7 cut(s) 69, 167, 201, 1424, 1857, 2456, 3174
MaeII ACGT 3 cut(s) 389, 483, 1306
MaeIII GTNAC 6 cut(s) 620, 889, 1148, 1544, 1573, 2066
MalI GATC 9 cut(s) 60, 123, 435, 681, 940, 1071, 1245, 2255, 3240
MboI GATC 9 cut(s) 58, 121, 433, 679, 938, 1069, 1243, 2253, 3238
MfeI CAATTG 2 cut(s) 580, 2652
MflI RGATCY 4 cut(s) 679, 1069, 2253, 3238
MhlI GDGCHC 1 cut(s) 565
MlsI TGGCCA 1 cut(s) 419
MluNI TGGCCA 1 cut(s) 419
MlyI GAGTC 3 cut(s) 2240, 2999, 3173
MmeI TCCRAC 3 cut(s) 1935, 2682, 3102
Mox20I TGGCCA 1 cut(s) 419
Mph1103I ATGCAT 3 cut(s) 265, 1492, 1786
MroXI GAANNNNTTC 2 cut(s) 174, 1879
MscI TGGCCA 1 cut(s) 419
MslI CAYNNNNRTG 5 cut(s) 732, 1155, 2073, 2511, 3006
Msp20I TGGCCA 1 cut(s) 419
MspA1I CMGCKG 3 cut(s) 664, 740, 2597
MspI CCGG 4 cut(s) 20, 2437, 2957, 3161
MspR9I CCNGG 4 cut(s) 1232, 2003, 2987, 2997
MunI CAATTG 2 cut(s) 580, 2652
Mva1269I GAATGC 4 cut(s) 265, 916, 2718, 3034
MvaI CCWGG 4 cut(s) 1232, 2003, 2987, 2997
MvnI CGCG 2 cut(s) 140, 2905
NcoI CCATGG 1 cut(s) 898
NdeI CATATG 1 cut(s) 3003
NdeII GATC 9 cut(s) 58, 121, 433, 679, 938, 1069, 1243, 2253, 3238
NlaIV GGNNCC 3 cut(s) 271, 1338, 2340
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 5 cut(s) 889, 1148, 1544, 1573, 2066
NruI TCGCGA 1 cut(s) 140
NsiI ATGCAT 3 cut(s) 265, 1492, 1786
NspI RCATGY 3 cut(s) 510, 1516, 2168
PaeI GCATGC 1 cut(s) 510
PagI TCATGA 1 cut(s) 376
PaqCI CACCTGC 2 cut(s) 2360, 3103
PceI AGGCCT 1 cut(s) 2812
PciI ACATGT 1 cut(s) 2164
PciSI GCTCTTC 1 cut(s) 2601
PctI GAATGC 4 cut(s) 265, 916, 2718, 3034
PdmI GAANNNNTTC 2 cut(s) 174, 1879
PfeI GAWTC 5 cut(s) 539, 574, 1880, 3068, 3125
PflMI CCANNNNNTGG 1 cut(s) 187
PinAI ACCGGT 1 cut(s) 19
PleI GAGTC 3 cut(s) 2240, 2998, 3172
PpsI GAGTC 3 cut(s) 2240, 2998, 3172
Ppu21I YACGTR 2 cut(s) 390, 1307
PscI ACATGT 1 cut(s) 2164
PshAI GACNNNNGTC 1 cut(s) 2485
Psp6I CCWGG 4 cut(s) 1230, 2001, 2985, 2995
PspGI CCWGG 4 cut(s) 1230, 2001, 2985, 2995
PspN4I GGNNCC 3 cut(s) 271, 1338, 2340
PspPI GGNCC 3 cut(s) 270, 902, 2434
PsrI GAACNNNNNNTAC 2 cut(s) 2782, 2814
PstI CTGCAG 3 cut(s) 2558, 3100, 3193
PstNI CAGNNNCTG 3 cut(s) 743, 2597, 2930
PsuI RGATCY 4 cut(s) 679, 1069, 2253, 3238
PvuII CAGCTG 2 cut(s) 740, 2597
RruI TCGCGA 1 cut(s) 140
RseI CAYNNNNRTG 5 cut(s) 732, 1155, 2073, 2511, 3006
SalI GTCGAC 1 cut(s) 3102
SapI GCTCTTC 1 cut(s) 2601
Sau3AI GATC 9 cut(s) 58, 121, 433, 679, 938, 1069, 1243, 2253, 3238
Sau96I GGNCC 3 cut(s) 270, 902, 2434
SbfI CCTGCAGG 1 cut(s) 3100
ScaI AGTACT 2 cut(s) 2552, 2894
SchI GAGTC 3 cut(s) 2240, 2999, 3173
ScrFI CCNGG 4 cut(s) 1232, 2003, 2987, 2997
SdaI CCTGCAGG 1 cut(s) 3100
SduI GDGCHC 1 cut(s) 565
SfcI CTRYAG 4 cut(s) 1275, 2554, 3096, 3189
SinI GGWCC 2 cut(s) 902, 2434
SmiMI CAYNNNNRTG 5 cut(s) 732, 1155, 2073, 2511, 3006
SmlI CTYRAG 7 cut(s) 98, 1532, 1604, 2178, 2221, 2567, 2896
SmoI CTYRAG 7 cut(s) 98, 1532, 1604, 2178, 2221, 2567, 2896
SphI GCATGC 1 cut(s) 510
Sse8387I CCTGCAGG 1 cut(s) 3100
SseBI AGGCCT 1 cut(s) 2812
SsiI CCGC 6 cut(s) 227, 590, 664, 2288, 2806, 3112
SspI AATATT 1 cut(s) 1521
SspMI CTAG 7 cut(s) 69, 167, 201, 1424, 1857, 2456, 3174
StuI AGGCCT 1 cut(s) 2812
StyD4I CCNGG 4 cut(s) 1230, 2001, 2985, 2995
StyI CCWWGG 6 cut(s) 68, 286, 420, 898, 1562, 2193
TaiI ACGT 3 cut(s) 392, 486, 1309
TaqI TCGA 8 cut(s) 57, 90, 120, 1088, 1344, 1554, 1714, 3103
TatI WGTACW 6 cut(s) 552, 978, 1051, 2550, 2789, 2892
TauI GCSGC 1 cut(s) 593
TfiI GAWTC 5 cut(s) 539, 574, 1880, 3068, 3125
TscAI CASTG 7 cut(s) 847, 1089, 1140, 1627, 1761, 2122, 2300
TseFI GTSAC 5 cut(s) 889, 1148, 1544, 1573, 2066
Tsp45I GTSAC 5 cut(s) 889, 1148, 1544, 1573, 2066
TspGWI ACGGA 3 cut(s) 2258, 2930, 3121
TspRI CASTG 7 cut(s) 847, 1089, 1140, 1627, 1761, 2122, 2300
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 902, 2434
XapI RAATTY 7 cut(s) 28, 1019, 1190, 1388, 2155, 2185, 3184
XceI RCATGY 3 cut(s) 510, 1516, 2168
XcmI CCANNNNNNNNNTGG 1 cut(s) 1897
XmaJI CCTAGG 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 3103
XmnI GAANNNNTTC 2 cut(s) 174, 1879
XspI CTAG 7 cut(s) 69, 167, 201, 1424, 1857, 2456, 3174
ZrmI AGTACT 2 cut(s) 2552, 2894
Zsp2I ATGCAT 3 cut(s) 265, 1492, 1786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.