Rroxscaffold_2G00147090

RNA polymerase-associated protein CTR9 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016235
Physical Location & Seq
Reverse (-)
85007878 .. 85016061
8184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147090.1

Sequence Viewer

Length: 3141 bp
ATGGCGTCAGTTTATATACCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGATCAGCTTCCTAGGGACGCTTCGGATATCCTCGATATCCTCAAGGCCGAGCAAGCCCCTCTCGATCTCTGGCTCATTATCGCGAGAGAGTATTTCAAGCAAGGGAAACTAGAACAGTTTCGCCAGATTTTGGAGGAGGGGTCTAGTCCTGAGATTGATGAGTATTATGCGGATGTTCGGTACGAGAGGATTGCTATTTTGAATGCGTTAGGGGCCTATTACAGCTACCTTGGAAAGATTGAGACAAAACAGAGAGAAAAGGAGGAGCATTTCATTTTAGCCACACAGTTTTACAATAAAGCATCGAGAATAGACATTCATGAGCCTTCTACATGGGTTGGGAAAGGTCAGCTTTTACTGGCCAAGGGTGAAGTAGATCAGGCATTTAATGCGTTCAAGATTGTATTAGATGGAGACCGTGATAACGTCCCTTCCCTTCTGGGTCAGGCATGCGTTGAGTTTAATCGTGGGCAGTATTCTGATTCATTGGAGCTGTACAAGAGAGCCCTGCAAGTGAATCCCAATTGTCCTGCGGCTGTGAGACTTGGCATTGGTCTCTGTCGTTACAAAATGGGTCAATTTGAAAAAGCTTGGCAGGCATTTCAGCGGTTAGATCCTGAAAATGTTGAGGCTCTTGTTGCTCTTGCAATTTTGGATTTGCATACTAATGCAGCTGCTGGAATAAGGAAAGGAATGGAAAAAATGCAGAGAGCTTTTGAGCTATACCCTTATTGTGCAATGGCCTTAAACTATCTGGCAAACCATTTTTTCTACACTGGTCAGCACTTTTTAGTTGAGCAACTTACTGAGACTGCACTTGCTGTCACCAACCATGGACCAACAAAGTCGCATTCCTACTACAATTTAGCACGATCTTACCATAGCAAGGGGGACTATGATAAGGCAGGAGTGTACTACATGGCATCTGTCAAGGAAATCAGTAAACCCCAAGAATTCATATTTCCTTATTATGGAGGCCCCAGTTTTGCGCCTGGGTCTGCCAAGCGCGTTTGGGGCATTTATGGTTTGGGACAAGTACAACTGAAGATGGGAGATCTTAAAAGTTCACTGTCAAACTTTGAAAAGGTCTTGGAGATTTACCCTGATAATTGCGAGACACTGAAAGCTCTTGGTCACATATATGTTCAGCTTGGGCAGACAGGGAAGGCATTGGAATTTATGAGGAAGGCTACAAAAATTGACCCAAATGATGCCCAGGCATTTCTTGATCTGGGAGAATTATTAATTTCATCTGATGCTGTAGCAGCTCAGGACTGCCTAAAAACTGCACGTAATCTTTTGAAGAAGGGAGGTCAGGAGGTACCAATCGATGTTCTTAACAATCTTGGGGTACTTCATTTTGAAAGGGGAGAATTTGAGCTTGCTCAACAAACTTTCAGAGAGGCACTAGGTGATGGAATATGGGTGGCCTTCATTGATGGTAAAGAAAAAGCCCCATCTATTGATGATGATGCATCTATTTTTCAATACAAGGACATGCAAATATTCCATCAACTAGAGAAAGAAGGTCACTTAGTCGAATTACCTTGGAATAAAGTCACAACACTATTTAACCTTGCCAGACTACTTGAGCAATTACACAACACTGAAACGGCAAGCATATTTTACCGTTTGATTTTGTTCAAGTATCCAGACTATGTAGATGCTTATCTGAGACTTGCTGGCCTTGCAAAAGCTCGAAATAATTTACAGCTAAGCATTGAACTGGGAAACTGGAACTATTTTGCTGCAATTCGCAATGAGAAAAGAAATCCCAAGTTGGAAGCTACACATCTGGAAAAATCAAAAGAACTCTACACTAAAGTCCTGGCTCAACATTCTGCTAATTTATATGCTGCCAATGGTGCTGGAGTGGTCTTTGCAGAGAAGGGTCACTTTGATGTTTCAAAAGACATTTTTACACAGGTTCAAGAAGCTGCCAGTGGGAACATTTTTGTTCAGATGCCTGATGTATGGATAAATTTGGCACATGTTTATTTTGCTCAAGGCAATTTTCCCTTGGCTGTGAAAATGTATCAAAACTGCTTGAGGAAGTTCTTTAACAACACGGACTCTCAGATCCTACTGTATATAGCTCGTACACATTATGAAGCGGAGCAGTGGCAAGACTGCAAAAAAACTTTAATGAGAGCCATTCACTTGGCACCTTCAAACTACACATTTAGGTTTGATGCAGGTGTTGTGATGCAAAAGTTCTCAGCTTCAACCTTACAAAAACCAAAAAAATCTGTGGATGAGGTCCGGTCAACAGTTGCAGAGCTAGAAAATGCTGTTCGTTTATTTAGACAACTGTCTGCTGCTTCCAGCCTTCACTTTCATGGGTTTGATGAGAAAAAGATTGACACTCATGTTGAGTACTGCAGCCACTTGCTTGAGGCTGCAAGAGTTCATTTAACAGCAGCTGAGCATGAAGAGCAGAAGGTTCGGCAGAAACAAGAACTTGCTCGTCAGATGGCAATTGCTGAGGAAGCCCGTCGTAAGGCTGAAGAACAGAGGAAGTTCCAGTTGGAGAGGAGAATGCAAGAGGACGAACTAAAGCGAGTGAGACAACAGGAGGAGCATTTTGAGCGCATAAAGGAGCAATGGAAGAGTAGTACATCTGGTTCTAAGCGAAGGCCTTCAGATATGGATGATGAGGACGGCGGGCATAGTGAAAAGAGAAGGAGAAAAGGTGGGAAGAAGAGAAAGAAGGACAAGTACTCAAGGTCGCGTTATGAAACGGAGGAAGCAGAAGCTGAGCAGATGGACTATCAGGAAGCACCGGAAATTGAAGATGCTAACACAAACTACCAGGAGTCCCCAGGTCATATGAATGAGCAGGATGATGAAGAGAATGCTCAAAATCCTCTTGAAGCAGCTTTTGGCATTGAAGATTCTGATGTTGAGGATGAGGTTGCACCTGCAGGTCGACGGAGGCGGGCATGGTCGGAATCCGATGATGATGATGAGCAGCAAGAGAGGCAGCCGGAGTCCAGTCCTAGAAGAGAAAATTCTGCAGATGTTCAGAGTGATGGAGGAGAAGGTGGTGATAAGCCGAATGGGGATCTTGATGATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000785 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016020 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035327 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_16 TPR_2 TPR_6 TPR_8

Protein Analysis

1046

Amino Acids

119.49

Weight (kDa)

5.46

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 360 - 420 2.3e-07 Tetratricopeptide repeat
TPR_19 PF14559 367 - 426 6.3e-07 Tetratricopeptide repeat
TPR_CcmH_CycH PF23914 387 - 488 1.2e-07 Cytochrome c-type biogenesis protein H TPR domain
TPR_8 PF13181 396 - 423 8.9e-06 Tetratricopeptide repeat
TPR_11 PF13414 397 - 433 5.8e-06 TPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08430 FvH4_1g08430
malus_domestica MD02G1088500.v1.1
prunus_persica Prupe.7G201100_v2.0.a1 Prupe.7G201100_v2.0.a1
pyrus_communis pycom02g07110
rosa_chinensis RchiOBHm_Chr2g0094531
rosa_laevigata RLG00000016499
rosa_multiflora Rmu_sc0004359.1_g000042
rosa_roxburghii Rroxscaffold_2G00147090
rosa_rugosa Rorug02G0044500
rosa_samantha Rh2AG092800 Rh2BG093000 Rh2CG095500 Rh2DG091900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 2243, 2986
Acc36I ACCTGC 3 cut(s) 2243, 2972, 2986
Acc65I GGTACC 1 cut(s) 1378
AccB1I GGYRCC 2 cut(s) 1378, 2221
AccB7I CCANNNNNTGG 1 cut(s) 187
AccI GTMKAC 1 cut(s) 2986
AccII CGCG 3 cut(s) 140, 1065, 2788
AciI CCGC 6 cut(s) 227, 590, 664, 2171, 2721, 2995
AclWI GGATC 3 cut(s) 665, 2131, 3129
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 6 cut(s) 28, 1010, 1232, 1430, 2038, 3067
AcuI CTGAAG 3 cut(s) 1121, 2583, 2682
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 1469
AfiI CCNNNNNNNGG 4 cut(s) 187, 943, 1028, 2557
AflIII ACRYGT 1 cut(s) 2047
AgeI ACCGGT 1 cut(s) 19
AjnI CCWGG 5 cut(s) 1048, 1272, 1884, 2868, 2878
AjuI GAANNNNNNNTTGG 4 cut(s) 2567, 2599, 2922, 2954
Alw26I GTCTC 8 cut(s) 293, 465, 592, 617, 860, 1166, 1726, 2617
AlwI GGATC 3 cut(s) 665, 2131, 3129
AlwNI CAGNNNCTG 3 cut(s) 734, 2480, 2813
AoxI GGCC 8 cut(s) 102, 270, 417, 798, 1033, 1485, 1741, 2693
ApoI RAATTY 6 cut(s) 28, 1010, 1232, 1430, 2038, 3067
AseI ATTAAT 1 cut(s) 1301
AsiGI ACCGGT 1 cut(s) 19
Asp700I GAANNNNTTC 2 cut(s) 174, 2695
Asp718I GGTACC 1 cut(s) 1378
AspA2I CCTAGG 1 cut(s) 68
AspLEI GCGC 3 cut(s) 1048, 1065, 2649
AspS9I GGNCC 4 cut(s) 270, 893, 1034, 2317
AsuHPI GGTGA 4 cut(s) 437, 874, 1481, 3116
AvaII GGWCC 2 cut(s) 893, 2317
AvrII CCTAGG 1 cut(s) 68
BalI TGGCCA 1 cut(s) 419
BanI GGYRCC 2 cut(s) 1378, 2221
BanII GRGCYC 1 cut(s) 565
BarI GAAGNNNNNNTAC 2 cut(s) 2759, 2791
BbvCI CCTCAGC 1 cut(s) 2541
BccI CCATC 9 cut(s) 461, 1099, 1466, 1490, 1522, 1575, 2524, 2815, 3083
BceAI ACGGC 2 cut(s) 1686, 2734
BcgI CGANNNNNNTGC 4 cut(s) 230, 264, 2483, 2517
BciT130I CCWGG 5 cut(s) 1050, 1274, 1886, 2870, 2880
BciVI GTATCC 1 cut(s) 1716
BcoDI GTCTC 8 cut(s) 293, 465, 592, 617, 860, 1166, 1726, 2617
BfaI CTAG 7 cut(s) 69, 167, 201, 1466, 1574, 2339, 3057
BfmI CTRYAG 4 cut(s) 1317, 2437, 2979, 3072
BfuAI ACCTGC 3 cut(s) 2243, 2972, 2986
BfuI GTATCC 1 cut(s) 1716
BglII AGATCT 1 cut(s) 1111
BlnI CCTAGG 1 cut(s) 68
BlpI GCTNAGC 3 cut(s) 1772, 2481, 2814
BmcAI AGTACT 2 cut(s) 2435, 2777
Bme1390I CCNGG 5 cut(s) 1050, 1274, 1886, 2870, 2880
Bme18I GGWCC 2 cut(s) 893, 2317
BmgT120I GGNCC 4 cut(s) 270, 893, 1034, 2317
BmiI GGNNCC 4 cut(s) 271, 1036, 1380, 2223
BmrFI CCNGG 5 cut(s) 1050, 1274, 1886, 2870, 2880
BmrI ACTGGG 2 cut(s) 1032, 1793
BmuI ACTGGG 2 cut(s) 1032, 1793
BoxI GACNNNNGTC 1 cut(s) 2368
BpmI CTGGAG 1 cut(s) 1947
Bpu10I CCTNAGC 2 cut(s) 1326, 2541
Bpu1102I GCTNAGC 3 cut(s) 1772, 2481, 2814
BpuEI CTTGAG 6 cut(s) 83, 1667, 2046, 2125, 2471, 2764
Bsa29I ATCGAT 1 cut(s) 1386
BsaAI YACGTR 1 cut(s) 1349
BsaBI GATNNNNATC 1 cut(s) 1725
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 465, 617
BsaJI CCNNGG 9 cut(s) 68, 286, 420, 889, 1049, 1272, 1604, 2076, 2878
BsaWI WCCGGW 3 cut(s) 19, 2319, 2839
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 2734, 2764
Bsc4I CCNNNNNNNGG 4 cut(s) 187, 943, 1028, 2557
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 8 cut(s) 420, 838, 1038, 1788, 1796, 1998, 2581, 3051
Bse3DI GCAATG 3 cut(s) 801, 1822, 2666
Bse8I GATNNNNATC 1 cut(s) 1725
BseBI CCWGG 5 cut(s) 1050, 1274, 1886, 2870, 2880
BseCI ATCGAT 1 cut(s) 1386
BseDI CCNNGG 9 cut(s) 68, 286, 420, 889, 1049, 1272, 1604, 2076, 2878
BseGI GGATG 5 cut(s) 235, 2317, 2713, 2905, 2971
BseJI GATNNNNATC 1 cut(s) 1725
BseLI CCNNNNNNNGG 4 cut(s) 187, 943, 1028, 2557
BseMI GCAATG 3 cut(s) 801, 1822, 2666
BseMII CTCAG 9 cut(s) 198, 855, 1340, 1721, 2147, 2289, 2472, 2532, 2805
BseNI ACTGG 8 cut(s) 420, 838, 1038, 1788, 1796, 1998, 2581, 3051
BseRI GAGGAG 7 cut(s) 50, 53, 206, 335, 2605, 2648, 3108
BsgI GTGCAG 3 cut(s) 44, 855, 1329
Bsh1236I CGCG 3 cut(s) 140, 1065, 2788
BshFI GGCC 8 cut(s) 104, 272, 419, 800, 1035, 1487, 1743, 2695
BshNI GGYRCC 2 cut(s) 1378, 2221
BshTI ACCGGT 1 cut(s) 19
BshVI ATCGAT 1 cut(s) 1386
BsiSI CCGG 4 cut(s) 20, 2320, 2840, 3044
BslFI GGGAC 5 cut(s) 86, 470, 962, 1101, 2860
BslI CCNNNNNNNGG 4 cut(s) 187, 943, 1028, 2557
BsmAI GTCTC 8 cut(s) 293, 465, 592, 617, 860, 1166, 1726, 2617
BsmFI GGGAC 5 cut(s) 86, 470, 962, 1101, 2860
BsmI GAATGC 4 cut(s) 265, 907, 2601, 2917
BsnI GGCC 8 cut(s) 104, 272, 419, 800, 1035, 1487, 1743, 2695
Bso31I GGTCTC 2 cut(s) 465, 617
Bsp1286I GDGCHC 1 cut(s) 565
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 9 cut(s) 58, 121, 433, 670, 929, 1111, 1285, 2136, 3121
Bsp1720I GCTNAGC 3 cut(s) 1772, 2481, 2814
Bsp19I CCATGG 1 cut(s) 889
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 6 cut(s) 227, 590, 664, 2171, 2721, 2995
BspANI GGCC 8 cut(s) 104, 272, 419, 800, 1035, 1487, 1743, 2695
BspCNI CTCAG 9 cut(s) 199, 856, 1339, 1722, 2146, 2288, 2473, 2533, 2806
BspDI ATCGAT 1 cut(s) 1386
BspFNI CGCG 3 cut(s) 140, 1065, 2788
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 4 cut(s) 271, 1036, 1380, 2223
BspMAI CTGCAG 3 cut(s) 2441, 2983, 3076
BspMI ACCTGC 3 cut(s) 2243, 2972, 2986
BspPI GGATC 3 cut(s) 665, 2131, 3129
BspQI GCTCTTC 1 cut(s) 2484
BspT107I GGYRCC 2 cut(s) 1378, 2221
BspTNI GGTCTC 2 cut(s) 465, 617
BsrDI GCAATG 3 cut(s) 801, 1822, 2666
BsrFI RCCGGY 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 8 cut(s) 420, 838, 1038, 1788, 1796, 1998, 2581, 3051
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 9 cut(s) 68, 286, 420, 889, 1049, 1272, 1604, 2076, 2878
BssMI GATC 9 cut(s) 58, 121, 433, 670, 929, 1111, 1285, 2136, 3121
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 6 cut(s) 68, 286, 420, 889, 1604, 2076
Bst2UI CCWGG 5 cut(s) 1050, 1274, 1886, 2870, 2880
Bst4CI ACNGT 8 cut(s) 174, 345, 476, 1128, 1688, 2145, 2329, 2370
Bst6I CTCTTC 5 cut(s) 2484, 2660, 2753, 2901, 3055
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 446
BstAUI TGTACA 1 cut(s) 552
BstBAI YACGTR 1 cut(s) 1349
BstC8I GCNNGC 8 cut(s) 111, 508, 654, 1440, 1675, 1741, 2723, 2997
BstDSI CCRYGG 1 cut(s) 889
BstF5I GGATG 5 cut(s) 235, 2317, 2713, 2905, 2971
BstFNI CGCG 3 cut(s) 140, 1065, 2788
BstHHI GCGC 3 cut(s) 1048, 1065, 2649
BstKTI GATC 9 cut(s) 61, 124, 436, 673, 932, 1114, 1288, 2139, 3124
BstMAI GTCTC 8 cut(s) 293, 465, 592, 617, 860, 1166, 1726, 2617
BstMBI GATC 9 cut(s) 58, 121, 433, 670, 929, 1111, 1285, 2136, 3121
BstNI CCWGG 5 cut(s) 1050, 1274, 1886, 2870, 2880
BstNSI RCATGY 3 cut(s) 510, 1558, 2051
BstPAI GACNNNNGTC 1 cut(s) 2368
BstSCI CCNGG 5 cut(s) 1048, 1272, 1884, 2868, 2878
BstSFI CTRYAG 4 cut(s) 1317, 2437, 2979, 3072
BstUI CGCG 3 cut(s) 140, 1065, 2788
BstX2I RGATCY 4 cut(s) 670, 1111, 2136, 3121
BstXI CCANNNNNNTGG 1 cut(s) 2218
BstYI RGATCY 4 cut(s) 670, 1111, 2136, 3121
Bsu15I ATCGAT 1 cut(s) 1386
BsuI GTATCC 1 cut(s) 1716
BsuRI GGCC 8 cut(s) 104, 272, 419, 800, 1035, 1487, 1743, 2695
BsuTUI ATCGAT 1 cut(s) 1386
BtgI CCRYGG 1 cut(s) 889
BtsCI GGATG 5 cut(s) 235, 2317, 2713, 2905, 2971
BtsI GCAGTG 1 cut(s) 2183
BtsIMutI CAGTG 6 cut(s) 831, 1124, 1175, 1662, 2005, 2183
BtuMI TCGCGA 1 cut(s) 140
BveI ACCTGC 3 cut(s) 2243, 2972, 2986
Cac8I GCNNGC 8 cut(s) 111, 508, 654, 1440, 1675, 1741, 2723, 2997
CaiI CAGNNNCTG 3 cut(s) 734, 2480, 2813
CciI TCATGA 1 cut(s) 376
CfoI GCGC 3 cut(s) 1048, 1065, 2649
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 4 cut(s) 270, 893, 1034, 2317
ClaI ATCGAT 1 cut(s) 1386
CseI GACGC 1 cut(s) 83
CspAI ACCGGT 1 cut(s) 19
DpnI GATC 9 cut(s) 60, 123, 435, 672, 931, 1113, 1287, 2138, 3123
DpnII GATC 9 cut(s) 58, 121, 433, 670, 929, 1111, 1285, 2136, 3121
DraIII CACNNNGTG 1 cut(s) 1469
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 5 cut(s) 2484, 2660, 2753, 2901, 3055
EarI CTCTTC 5 cut(s) 2484, 2660, 2753, 2901, 3055
Eco130I CCWWGG 6 cut(s) 68, 286, 420, 889, 1604, 2076
Eco147I AGGCCT 1 cut(s) 2695
Eco24I GRGCYC 1 cut(s) 565
Eco31I GGTCTC 2 cut(s) 465, 617
Eco32I GATATC 2 cut(s) 85, 94
Eco47I GGWCC 2 cut(s) 893, 2317
Eco57I CTGAAG 3 cut(s) 1121, 2583, 2682
EcoO109I RGGNCCY 2 cut(s) 270, 1034
EcoRI GAATTC 2 cut(s) 28, 1010
EcoRII CCWGG 5 cut(s) 1048, 1272, 1884, 2868, 2878
EcoRV GATATC 2 cut(s) 85, 94
EcoT14I CCWWGG 6 cut(s) 68, 286, 420, 889, 1604, 2076
EcoT22I ATGCAT 1 cut(s) 1534
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 6 cut(s) 68, 286, 420, 889, 1604, 2076
FalI AAGNNNNNCTT 4 cut(s) 393, 425, 1937, 1969
FaqI GGGAC 5 cut(s) 86, 470, 962, 1101, 2860
FauI CCCGC 2 cut(s) 2714, 2988
FauNDI CATATG 1 cut(s) 2886
FblI GTMKAC 1 cut(s) 2986
FokI GGATG 5 cut(s) 242, 2324, 2720, 2912, 2978
FriOI GRGCYC 1 cut(s) 565
FspBI CTAG 7 cut(s) 69, 167, 201, 1466, 1574, 2339, 3057
GlaI GCGC 3 cut(s) 1047, 1064, 2648
GsuI CTGGAG 1 cut(s) 1947
HaeIII GGCC 8 cut(s) 104, 272, 419, 800, 1035, 1487, 1743, 2695
HapII CCGG 4 cut(s) 20, 2320, 2840, 3044
HgaI GACGC 1 cut(s) 83
HhaI GCGC 3 cut(s) 1048, 1065, 2649
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 3 cut(s) 1046, 1063, 2647
HinP1I GCGC 3 cut(s) 1046, 1063, 2647
HincII GTYRAC 2 cut(s) 2325, 2987
HindII GTYRAC 2 cut(s) 2325, 2987
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 7 cut(s) 539, 574, 2129, 2873, 2951, 3008, 3047
HpaII CCGG 4 cut(s) 20, 2320, 2840, 3044
HphI GGTGA 4 cut(s) 437, 874, 1481, 3116
Hpy166II GTNNAC 6 cut(s) 970, 1001, 1124, 2159, 2325, 2987
Hpy8I GTNNAC 6 cut(s) 970, 1001, 1124, 2159, 2325, 2987
Hpy99I CGWCG 2 cut(s) 2556, 2991
HpyCH4III ACNGT 8 cut(s) 174, 345, 476, 1128, 1688, 2145, 2329, 2370
HpyCH4IV ACGT 2 cut(s) 483, 1348
HpySE526I ACGT 2 cut(s) 483, 1348
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 3 cut(s) 1046, 1063, 2647
KpnI GGTACC 1 cut(s) 1382
Kzo9I GATC 9 cut(s) 58, 121, 433, 670, 929, 1111, 1285, 2136, 3121
LguI GCTCTTC 1 cut(s) 2484
LmnI GCTCC 5 cut(s) 322, 547, 2173, 2635, 2656
MaeI CTAG 7 cut(s) 69, 167, 201, 1466, 1574, 2339, 3057
MaeII ACGT 2 cut(s) 483, 1348
MaeIII GTNAC 6 cut(s) 620, 880, 1190, 1586, 1615, 1949
MalI GATC 9 cut(s) 60, 123, 435, 672, 931, 1113, 1287, 2138, 3123
MboI GATC 9 cut(s) 58, 121, 433, 670, 929, 1111, 1285, 2136, 3121
MfeI CAATTG 2 cut(s) 580, 2535
MflI RGATCY 4 cut(s) 670, 1111, 2136, 3121
MhlI GDGCHC 1 cut(s) 565
MlsI TGGCCA 1 cut(s) 419
MluNI TGGCCA 1 cut(s) 419
MlyI GAGTC 3 cut(s) 2123, 2882, 3056
MmeI TCCRAC 3 cut(s) 1818, 2565, 2985
Mox20I TGGCCA 1 cut(s) 419
Mph1103I ATGCAT 1 cut(s) 1534
MroXI GAANNNNTTC 2 cut(s) 174, 2695
MscI TGGCCA 1 cut(s) 419
MslI CAYNNNNRTG 5 cut(s) 723, 1197, 1956, 2394, 2889
Msp20I TGGCCA 1 cut(s) 419
MspA1I CMGCKG 3 cut(s) 664, 731, 2480
MspI CCGG 4 cut(s) 20, 2320, 2840, 3044
MspR9I CCNGG 5 cut(s) 1050, 1274, 1886, 2870, 2880
MunI CAATTG 2 cut(s) 580, 2535
Mva1269I GAATGC 4 cut(s) 265, 907, 2601, 2917
MvaI CCWGG 5 cut(s) 1050, 1274, 1886, 2870, 2880
MvnI CGCG 3 cut(s) 140, 1065, 2788
NcoI CCATGG 1 cut(s) 889
NdeI CATATG 1 cut(s) 2886
NdeII GATC 9 cut(s) 58, 121, 433, 670, 929, 1111, 1285, 2136, 3121
NlaIV GGNNCC 4 cut(s) 271, 1036, 1380, 2223
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 5 cut(s) 880, 1190, 1586, 1615, 1949
NruI TCGCGA 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 1534
NspI RCATGY 3 cut(s) 510, 1558, 2051
PaeI GCATGC 1 cut(s) 510
PagI TCATGA 1 cut(s) 376
PaqCI CACCTGC 2 cut(s) 2243, 2986
PceI AGGCCT 1 cut(s) 2695
PciI ACATGT 1 cut(s) 2047
PciSI GCTCTTC 1 cut(s) 2484
PctI GAATGC 4 cut(s) 265, 907, 2601, 2917
PdmI GAANNNNTTC 2 cut(s) 174, 2695
PfeI GAWTC 4 cut(s) 539, 574, 2951, 3008
PflMI CCANNNNNTGG 1 cut(s) 187
PinAI ACCGGT 1 cut(s) 19
PleI GAGTC 3 cut(s) 2123, 2881, 3055
PpsI GAGTC 3 cut(s) 2123, 2881, 3055
Ppu21I YACGTR 1 cut(s) 1349
PscI ACATGT 1 cut(s) 2047
PshAI GACNNNNGTC 1 cut(s) 2368
PshBI ATTAAT 1 cut(s) 1301
Psp6I CCWGG 5 cut(s) 1048, 1272, 1884, 2868, 2878
PspGI CCWGG 5 cut(s) 1048, 1272, 1884, 2868, 2878
PspN4I GGNNCC 4 cut(s) 271, 1036, 1380, 2223
PspPI GGNCC 4 cut(s) 270, 893, 1034, 2317
PsrI GAACNNNNNNTAC 2 cut(s) 2665, 2697
PstI CTGCAG 3 cut(s) 2441, 2983, 3076
PstNI CAGNNNCTG 3 cut(s) 734, 2480, 2813
PsuI RGATCY 4 cut(s) 670, 1111, 2136, 3121
PvuII CAGCTG 2 cut(s) 731, 2480
RruI TCGCGA 1 cut(s) 140
RseI CAYNNNNRTG 5 cut(s) 723, 1197, 1956, 2394, 2889
SalI GTCGAC 1 cut(s) 2985
SapI GCTCTTC 1 cut(s) 2484
Sau3AI GATC 9 cut(s) 58, 121, 433, 670, 929, 1111, 1285, 2136, 3121
Sau96I GGNCC 4 cut(s) 270, 893, 1034, 2317
SbfI CCTGCAGG 1 cut(s) 2983
ScaI AGTACT 2 cut(s) 2435, 2777
SchI GAGTC 3 cut(s) 2123, 2882, 3056
ScrFI CCNGG 5 cut(s) 1050, 1274, 1886, 2870, 2880
SdaI CCTGCAGG 1 cut(s) 2983
SduI GDGCHC 1 cut(s) 565
SfcI CTRYAG 4 cut(s) 1317, 2437, 2979, 3072
SinI GGWCC 2 cut(s) 893, 2317
SmiMI CAYNNNNRTG 5 cut(s) 723, 1197, 1956, 2394, 2889
SmlI CTYRAG 6 cut(s) 98, 1646, 2061, 2104, 2450, 2779
SmoI CTYRAG 6 cut(s) 98, 1646, 2061, 2104, 2450, 2779
SphI GCATGC 1 cut(s) 510
Sse8387I CCTGCAGG 1 cut(s) 2983
SseBI AGGCCT 1 cut(s) 2695
SsiI CCGC 6 cut(s) 227, 590, 664, 2171, 2721, 2995
SspI AATATT 1 cut(s) 1563
SspMI CTAG 7 cut(s) 69, 167, 201, 1466, 1574, 2339, 3057
StuI AGGCCT 1 cut(s) 2695
StyD4I CCNGG 5 cut(s) 1048, 1272, 1884, 2868, 2878
StyI CCWWGG 6 cut(s) 68, 286, 420, 889, 1604, 2076
TaaI ACNGT 8 cut(s) 174, 345, 476, 1128, 1688, 2145, 2329, 2370
TaiI ACGT 2 cut(s) 486, 1351
TaqI TCGA 8 cut(s) 57, 90, 120, 362, 1386, 1596, 1756, 2986
TatI WGTACW 6 cut(s) 552, 969, 1093, 2433, 2672, 2775
TauI GCSGC 1 cut(s) 593
TfiI GAWTC 4 cut(s) 539, 574, 2951, 3008
TscAI CASTG 6 cut(s) 838, 1131, 1182, 1669, 2005, 2183
TseFI GTSAC 5 cut(s) 880, 1190, 1586, 1615, 1949
Tsp45I GTSAC 5 cut(s) 880, 1190, 1586, 1615, 1949
TspGWI ACGGA 3 cut(s) 2141, 2813, 3004
TspRI CASTG 6 cut(s) 838, 1131, 1182, 1669, 2005, 2183
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 893, 2317
VspI ATTAAT 1 cut(s) 1301
XapI RAATTY 6 cut(s) 28, 1010, 1232, 1430, 2038, 3067
XceI RCATGY 3 cut(s) 510, 1558, 2051
XmaJI CCTAGG 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 2986
XmnI GAANNNNTTC 2 cut(s) 174, 2695
XspI CTAG 7 cut(s) 69, 167, 201, 1466, 1574, 2339, 3057
ZrmI AGTACT 2 cut(s) 2435, 2777
Zsp2I ATGCAT 1 cut(s) 1534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.