RLG00000016499

RNA polymerase-associated protein CTR9 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016235
Physical Location & Seq
Forward (+)
7114304 .. 7122137
7834 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016499

Sequence Viewer

Length: 3069 bp
ATGGCGTCAGTTTATATACCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGATCAGCTTCCTAGGGACGCTTCGGATATCCTTGATATCCTCAAGGCCGAGCAAGCCCCTCTCGATCTCTGGCTCATTATCGCGAGAGAGTATTTCAAGCAAGGGAAACTAGAACAGTTTCGCCAGATTTTGGAGGAGGGGTCTAGTCCTGAGATTGATGAGTATTATGCGGATGTTCGGTACGAGAGGATTGCTATTTTGAATGCATTAGGGGCCTATTACAGCTACCTTGGAAAGATTGAGACGAAACAGAGAGAAAAGGAGGAGCATTTCATTTTAGCCACACAGTTTTACAATAAAGCATCGAGAATAGACATTCATGAGCCTTCTACATGGGTTGGGAAAGGTCAGCTTTTACTGGCCAAGGGTGAAGTAGATCAGGCATTTAATGCATTCAAGATTGTATTAGATGGAGACCATGATAACGTCCCTTCCCTTTTGGGTCAGGCATGCGTTGAGTTTAATCGTGGGCAGTATTCTGATTCATTGGAGCTGTACAAGAGAGCCCTGCAAGTGAATCCCAATTGTCCTGCGGCTGTGAGACTTGGCATTGGTCTCTGTCGTTACAAAATGGGTCAATTTGAAAAAGCTTGGCAGGCATTTCAGCGGGTTTTACAGTTAGATCCTGAAAATGTTGAGGCTCTTGTTGCTCTTGCAATTTTGGATTTGCATACTAATGCAGCAATATTTGATTGCACTGAGTTGCAGGGGGACTATGATAAGGCAGGAGTGTACTACATGGCATCTGTCAAGGAAATCAGTAAACCCCAAGAATTCATATTTCCTTATTATGGTCTGGGACAAGTACAACTGAAGATGGGAGATCTTAAAAGTTCACTGTCGAACTTTGAAAAGGTCTTGGAGATTTACCCTGATAATTGCGAGACACTGAAAGCTCTTGGTCACATATATGTTCAGCTTGGGCAGACAGGGAAGGCATTGGAATTTATGAGGAAGGCTACAAAAATTGACCCAAATGATGCCCAGGCATTTCTTGATCTGGGAGAATTATTGATTTCATCTGATGCTGTAGCAGCTCAGGACTGCCTAAAAACTGCACGTAATCTTTTGAAGAAGGGAGGTCAGGAGGTACCAATCGATGTTCTTAACAATCTTGGGGTACTCCATTTTGAAAGGGGAGAATTTGAGCTTGCTCAACAAACTTTCAGAGAGGCACTAGGTGATGGAATATGGGTGGCCTTCATTGATGGTAAAGAAAAAGCCCCATCTATTGATGATGATGCATCTATTTTTCAATACAAGGACATGCAAATATTCCATCAACTTGAGAAAGAAGGTCACTTAGTCGAATTACCTTGGAATAAAGTCACAACACTTTTTAACCTTGCCAGACTACTTGAGCAATTACACAACACTGAAACGGCAAGCATATTTTACCGTTTGATTTTGTTCAAGTATCCAGACTATGTAGATGCTTATCTGAGACTTGCTGGCCTTGCAAAAGCTCGAAATAATTTACAACTAAGCATTGAACTGGTTAATGATGCACTGAAGGTGAATAACAAGTCCCCAAATGCATTATTGATGCTTGGTGACTTGGAATTAAAAAATGATGACTGGGTTAAGGCAAAAGAGACCTTTCGGGCTGCTAGTGAAGCAACTGAGGGAAAGGATTCCTATGCCACTCTTTCTCTGGGAAACTGGAACTATTTTGCTGCAATTCGCAATGAGAAAAGAAATCCCAAGTTGGAAGCTACACATCTGGAAAAATCAAAAGAACTCTACACTAAAGTCCTGGCTCAACATTCTGCTAATTTATATGCTGCCAATGGTGCTGGAGTGGTCTTTGCAGAGAAGGGTCACTTTGATGTTTCAAAAGACATTTTTACACAGGTTCAAGAAGCTGCCAGTGGGAACATTTTTGTTCAGATGCCTGATGTATGGATAAATTTGGCACATGTTTATTTTGCTCAAGGCAATTTTCCCTTGGCTGTGAAAATGTATCAAAACTGCTTGAGGAAGTTCTTTAACAACACGGACTCTCAGATCCTACTGTATATAGCTCGTACACATTATGAAGCGGAGCAGTGGCAAGACTGCAAAAAAACTTTAATGAGAGCCATTCACTTGGCACCTTCAAACTACACATTTAGGTTTGATGCAGGTGTTGTGATGCAAAAGTTCTCAGCTTCAACCTTACAAAAACCAAAAAAATCTGTGGATGAGGTCCGGTCAACAGTTGCAGAGCTAGAAAATGCTGTTCGTTTATTTAGACAACTGTCTGCTGCTTCCAGCCTTCACTTTCATGGGTTTGATGAGAAAAAGATTGACACTCATGTTGAGTACTGCAGCCACTTGCTTGAGGCTGCAAGAGTTCATTTAACAGCAGCTGAGCATGAAGAGCAGAAGGTTCGGCAGAAACAAGAACTTGCTCGTCAGATGGCAATTGCTGAGGAAGCCCGTCGTAAGGCTGAAGAACAGAGGAAGTTCCAGTTGGAGAGGAGAATGCAAGAGGACGAACTAAAGCGAGTGAGACAACAGGAGGAGCATTTTGAGCGCATAAAGGAGCAATGGAAAAGTAGTACATCTGGTTCTAAGCGAAGGCCTTCAGATATGGATGATGAGGACGGCGGGCATAGTGAAAAGAGAAGGAGAAAAGGTGGAAAGAAGAGAAAGAAGGACAAGTACTCAAGGTCGCGTTATGAAACGGAGGAAGCAGAAGCTGAGCAGATGGACTATCAGGAAGCACCGGAAATTGAAGATGCTAACACAAACTACCAGGAGTCCCCAGGTCATATGAATGAGCAGGATGATGAAGAGAATGCTCAAAATCCTCTTGAAGCAGCTTTTGGCATTGAAGATTCTGATGTTGAGGATGAGGTTGCACCTGCAGGTCGACGGAGGCGGGCATGGTCGGAATCCGATGATGATGATGAGCAGCAAGAGAGGCAGCCGGAGTCCAGTCCTAGAAGAGAAAATTCTGCAGATGTTCAGAGTGATGGAGGAGAAGGTGGTGATAAGCCGAATGGGGATCTTGATGATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000785 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016020 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035327 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_16 TPR_2 TPR_6 TPR_8

Protein Analysis

1023

Amino Acids

116.61

Weight (kDa)

5.15

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 167 - 230 5.8e-06 Tetratricopeptide repeat
TPR_9 PF13371 174 - 236 8.3e-06 Tetratricopeptide repeat
TPR_12 PF13424 282 - 343 1.4e-07 Tetratricopeptide repeat
TPR_19 PF14559 290 - 349 6.1e-07 Tetratricopeptide repeat
TPR_CcmH_CycH PF23914 310 - 411 1.1e-07 Cytochrome c-type biogenesis protein H TPR domain
TPR_8 PF13181 319 - 346 8.7e-06 Tetratricopeptide repeat
TPR_11 PF13414 320 - 356 5.7e-06 TPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08430 FvH4_1g08430
malus_domestica MD02G1088500.v1.1
prunus_persica Prupe.7G201100_v2.0.a1 Prupe.7G201100_v2.0.a1
pyrus_communis pycom02g07110
rosa_chinensis RchiOBHm_Chr2g0094531
rosa_laevigata RLG00000016499
rosa_multiflora Rmu_sc0004359.1_g000042
rosa_roxburghii Rroxscaffold_2G00147090
rosa_rugosa Rorug02G0044500
rosa_samantha Rh2AG092800 Rh2BG093000 Rh2CG095500 Rh2DG091900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 2171, 2914
Acc36I ACCTGC 3 cut(s) 2171, 2900, 2914
Acc65I GGTACC 1 cut(s) 1147
AccB1I GGYRCC 2 cut(s) 1147, 2149
AccB7I CCANNNNNTGG 1 cut(s) 187
AccI GTMKAC 1 cut(s) 2914
AccII CGCG 2 cut(s) 140, 2716
AciI CCGC 6 cut(s) 227, 590, 664, 2099, 2649, 2923
AclWI GGATC 3 cut(s) 674, 2059, 3057
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 6 cut(s) 28, 830, 1001, 1199, 1966, 2995
AcuI CTGAAG 4 cut(s) 890, 1589, 2511, 2610
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 1238
AfiI CCNNNNNNNGG 3 cut(s) 187, 848, 2485
AflIII ACRYGT 1 cut(s) 1975
AgeI ACCGGT 1 cut(s) 19
AjnI CCWGG 4 cut(s) 1041, 1812, 2796, 2806
AjuI GAANNNNNNNTTGG 4 cut(s) 2495, 2527, 2850, 2882
Alw26I GTCTC 8 cut(s) 293, 465, 592, 617, 935, 1495, 1646, 2545
AlwI GGATC 3 cut(s) 674, 2059, 3057
AlwNI CAGNNNCTG 2 cut(s) 2408, 2741
AoxI GGCC 6 cut(s) 102, 270, 417, 1254, 1510, 2621
ApoI RAATTY 6 cut(s) 28, 830, 1001, 1199, 1966, 2995
AsiGI ACCGGT 1 cut(s) 19
Asp700I GAANNNNTTC 3 cut(s) 174, 1690, 2623
Asp718I GGTACC 1 cut(s) 1147
AspA2I CCTAGG 1 cut(s) 68
AspLEI GCGC 1 cut(s) 2577
AspS9I GGNCC 2 cut(s) 270, 2245
AsuHPI GGTGA 5 cut(s) 437, 1250, 1585, 1622, 3044
AvaII GGWCC 1 cut(s) 2245
AvrII CCTAGG 1 cut(s) 68
BalI TGGCCA 1 cut(s) 419
BanI GGYRCC 2 cut(s) 1147, 2149
BanII GRGCYC 1 cut(s) 565
BarI GAAGNNNNNNTAC 2 cut(s) 2687, 2719
BbvCI CCTCAGC 1 cut(s) 2469
BccI CCATC 9 cut(s) 461, 868, 1235, 1259, 1291, 1344, 2452, 2743, 3011
BceAI ACGGC 2 cut(s) 1455, 2662
BcgI CGANNNNNNTGC 4 cut(s) 230, 264, 2411, 2445
BciT130I CCWGG 4 cut(s) 1043, 1814, 2798, 2808
BciVI GTATCC 1 cut(s) 1485
BcoDI GTCTC 8 cut(s) 293, 465, 592, 617, 935, 1495, 1646, 2545
BfaI CTAG 7 cut(s) 69, 167, 201, 1235, 1668, 2267, 2985
BfmI CTRYAG 4 cut(s) 1086, 2365, 2907, 3000
BfuAI ACCTGC 3 cut(s) 2171, 2900, 2914
BfuI GTATCC 1 cut(s) 1485
BglII AGATCT 1 cut(s) 880
BlnI CCTAGG 1 cut(s) 68
BlpI GCTNAGC 2 cut(s) 2409, 2742
BmcAI AGTACT 2 cut(s) 2363, 2705
Bme1390I CCNGG 4 cut(s) 1043, 1814, 2798, 2808
Bme18I GGWCC 1 cut(s) 2245
BmgT120I GGNCC 2 cut(s) 270, 2245
BmiI GGNNCC 3 cut(s) 271, 1149, 2151
BmrFI CCNGG 4 cut(s) 1043, 1814, 2798, 2808
BmrI ACTGGG 1 cut(s) 1645
BmuI ACTGGG 1 cut(s) 1645
BoxI GACNNNNGTC 1 cut(s) 2296
BpmI CTGGAG 1 cut(s) 1875
Bpu10I CCTNAGC 2 cut(s) 1095, 2469
Bpu1102I GCTNAGC 2 cut(s) 2409, 2742
BpuEI CTTGAG 7 cut(s) 83, 1364, 1436, 1974, 2053, 2399, 2692
Bsa29I ATCGAT 1 cut(s) 1155
BsaAI YACGTR 1 cut(s) 1118
BsaBI GATNNNNATC 1 cut(s) 1494
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 3 cut(s) 465, 617, 1646
BsaJI CCNNGG 7 cut(s) 68, 286, 420, 1041, 1373, 2004, 2806
BsaWI WCCGGW 3 cut(s) 19, 2247, 2767
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 2662, 2692
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 848, 2485
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 7 cut(s) 420, 1557, 1640, 1724, 1926, 2509, 2979
Bse3DI GCAATG 2 cut(s) 1750, 2594
Bse8I GATNNNNATC 1 cut(s) 1494
BseBI CCWGG 4 cut(s) 1043, 1814, 2798, 2808
BseCI ATCGAT 1 cut(s) 1155
BseDI CCNNGG 7 cut(s) 68, 286, 420, 1041, 1373, 2004, 2806
BseGI GGATG 5 cut(s) 235, 2245, 2641, 2833, 2899
BseJI GATNNNNATC 1 cut(s) 1494
BseLI CCNNNNNNNGG 3 cut(s) 187, 848, 2485
BseMI GCAATG 2 cut(s) 1750, 2594
BseNI ACTGG 7 cut(s) 420, 1557, 1640, 1724, 1926, 2509, 2979
BseRI GAGGAG 7 cut(s) 50, 53, 206, 335, 2533, 2576, 3036
BsgI GTGCAG 2 cut(s) 44, 1098
Bsh1236I CGCG 2 cut(s) 140, 2716
BshFI GGCC 6 cut(s) 104, 272, 419, 1256, 1512, 2623
BshNI GGYRCC 2 cut(s) 1147, 2149
BshTI ACCGGT 1 cut(s) 19
BshVI ATCGAT 1 cut(s) 1155
BsiSI CCGG 4 cut(s) 20, 2248, 2768, 2972
BslFI GGGAC 6 cut(s) 86, 470, 782, 870, 1570, 2788
BslI CCNNNNNNNGG 3 cut(s) 187, 848, 2485
BsmAI GTCTC 8 cut(s) 293, 465, 592, 617, 935, 1495, 1646, 2545
BsmBI CGTCTC 1 cut(s) 293
BsmFI GGGAC 6 cut(s) 86, 470, 782, 870, 1570, 2788
BsmI GAATGC 4 cut(s) 265, 449, 2529, 2845
BsnI GGCC 6 cut(s) 104, 272, 419, 1256, 1512, 2623
Bso31I GGTCTC 3 cut(s) 465, 617, 1646
Bsp1286I GDGCHC 1 cut(s) 565
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 8 cut(s) 58, 121, 433, 679, 880, 1054, 2064, 3049
Bsp1720I GCTNAGC 2 cut(s) 2409, 2742
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 6 cut(s) 227, 590, 664, 2099, 2649, 2923
BspANI GGCC 6 cut(s) 104, 272, 419, 1256, 1512, 2623
BspDI ATCGAT 1 cut(s) 1155
BspFNI CGCG 2 cut(s) 140, 2716
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 271, 1149, 2151
BspMAI CTGCAG 3 cut(s) 2369, 2911, 3004
BspMI ACCTGC 3 cut(s) 2171, 2900, 2914
BspPI GGATC 3 cut(s) 674, 2059, 3057
BspQI GCTCTTC 1 cut(s) 2412
BspT107I GGYRCC 2 cut(s) 1147, 2149
BspTNI GGTCTC 3 cut(s) 465, 617, 1646
BsrDI GCAATG 2 cut(s) 1750, 2594
BsrFI RCCGGY 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 7 cut(s) 420, 1557, 1640, 1724, 1926, 2509, 2979
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 7 cut(s) 68, 286, 420, 1041, 1373, 2004, 2806
BssMI GATC 8 cut(s) 58, 121, 433, 679, 880, 1054, 2064, 3049
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 5 cut(s) 68, 286, 420, 1373, 2004
Bst2UI CCWGG 4 cut(s) 1043, 1814, 2798, 2808
Bst4CI ACNGT 8 cut(s) 174, 345, 675, 897, 1457, 2073, 2257, 2298
Bst6I CTCTTC 4 cut(s) 2412, 2681, 2829, 2983
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 446
BstAUI TGTACA 1 cut(s) 552
BstBAI YACGTR 1 cut(s) 1118
BstC8I GCNNGC 8 cut(s) 111, 508, 654, 1209, 1444, 1510, 2651, 2925
BstF5I GGATG 5 cut(s) 235, 2245, 2641, 2833, 2899
BstFNI CGCG 2 cut(s) 140, 2716
BstHHI GCGC 1 cut(s) 2577
BstKTI GATC 8 cut(s) 61, 124, 436, 682, 883, 1057, 2067, 3052
BstMAI GTCTC 8 cut(s) 293, 465, 592, 617, 935, 1495, 1646, 2545
BstMBI GATC 8 cut(s) 58, 121, 433, 679, 880, 1054, 2064, 3049
BstNI CCWGG 4 cut(s) 1043, 1814, 2798, 2808
BstNSI RCATGY 3 cut(s) 510, 1327, 1979
BstPAI GACNNNNGTC 1 cut(s) 2296
BstSCI CCNGG 4 cut(s) 1041, 1812, 2796, 2806
BstSFI CTRYAG 4 cut(s) 1086, 2365, 2907, 3000
BstUI CGCG 2 cut(s) 140, 2716
BstX2I RGATCY 4 cut(s) 679, 880, 2064, 3049
BstXI CCANNNNNNTGG 1 cut(s) 2146
BstYI RGATCY 4 cut(s) 679, 880, 2064, 3049
Bsu15I ATCGAT 1 cut(s) 1155
BsuI GTATCC 1 cut(s) 1485
BsuRI GGCC 6 cut(s) 104, 272, 419, 1256, 1512, 2623
BsuTUI ATCGAT 1 cut(s) 1155
BtsCI GGATG 5 cut(s) 235, 2245, 2641, 2833, 2899
BtsI GCAGTG 1 cut(s) 2111
BtsIMutI CAGTG 7 cut(s) 753, 893, 944, 1431, 1565, 1933, 2111
BtuMI TCGCGA 1 cut(s) 140
BveI ACCTGC 3 cut(s) 2171, 2900, 2914
Cac8I GCNNGC 8 cut(s) 111, 508, 654, 1209, 1444, 1510, 2651, 2925
CaiI CAGNNNCTG 2 cut(s) 2408, 2741
CciI TCATGA 1 cut(s) 376
CfoI GCGC 1 cut(s) 2577
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 270, 2245
ClaI ATCGAT 1 cut(s) 1155
CseI GACGC 1 cut(s) 83
CspAI ACCGGT 1 cut(s) 19
DpnI GATC 8 cut(s) 60, 123, 435, 681, 882, 1056, 2066, 3051
DpnII GATC 8 cut(s) 58, 121, 433, 679, 880, 1054, 2064, 3049
DraIII CACNNNGTG 1 cut(s) 1238
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 4 cut(s) 2412, 2681, 2829, 2983
EarI CTCTTC 4 cut(s) 2412, 2681, 2829, 2983
Eco130I CCWWGG 5 cut(s) 68, 286, 420, 1373, 2004
Eco147I AGGCCT 1 cut(s) 2623
Eco24I GRGCYC 1 cut(s) 565
Eco31I GGTCTC 3 cut(s) 465, 617, 1646
Eco32I GATATC 2 cut(s) 85, 94
Eco47I GGWCC 1 cut(s) 2245
Eco57I CTGAAG 4 cut(s) 890, 1589, 2511, 2610
EcoO109I RGGNCCY 1 cut(s) 270
EcoRI GAATTC 2 cut(s) 28, 830
EcoRII CCWGG 4 cut(s) 1041, 1812, 2796, 2806
EcoRV GATATC 2 cut(s) 85, 94
EcoT14I CCWWGG 5 cut(s) 68, 286, 420, 1373, 2004
EcoT22I ATGCAT 4 cut(s) 265, 451, 1303, 1597
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 5 cut(s) 68, 286, 420, 1373, 2004
Esp3I CGTCTC 1 cut(s) 293
FalI AAGNNNNNCTT 4 cut(s) 393, 425, 1865, 1897
FaqI GGGAC 6 cut(s) 86, 470, 782, 870, 1570, 2788
FauI CCCGC 3 cut(s) 657, 2642, 2916
FauNDI CATATG 1 cut(s) 2814
FblI GTMKAC 1 cut(s) 2914
FokI GGATG 5 cut(s) 242, 2252, 2648, 2840, 2906
FriOI GRGCYC 1 cut(s) 565
FspBI CTAG 7 cut(s) 69, 167, 201, 1235, 1668, 2267, 2985
GlaI GCGC 1 cut(s) 2576
GsuI CTGGAG 1 cut(s) 1875
HaeIII GGCC 6 cut(s) 104, 272, 419, 1256, 1512, 2623
HapII CCGG 4 cut(s) 20, 2248, 2768, 2972
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 2577
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 2575
HinP1I GCGC 1 cut(s) 2575
HincII GTYRAC 2 cut(s) 2253, 2915
HindII GTYRAC 2 cut(s) 2253, 2915
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 8 cut(s) 539, 574, 1691, 2057, 2801, 2879, 2936, 2975
HpaII CCGG 4 cut(s) 20, 2248, 2768, 2972
HphI GGTGA 5 cut(s) 437, 1250, 1585, 1622, 3044
Hpy166II GTNNAC 6 cut(s) 790, 821, 893, 2087, 2253, 2915
Hpy8I GTNNAC 6 cut(s) 790, 821, 893, 2087, 2253, 2915
Hpy99I CGWCG 2 cut(s) 2484, 2919
HpyCH4III ACNGT 8 cut(s) 174, 345, 675, 897, 1457, 2073, 2257, 2298
HpyCH4IV ACGT 2 cut(s) 483, 1117
HpySE526I ACGT 2 cut(s) 483, 1117
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 2575
KpnI GGTACC 1 cut(s) 1151
Kzo9I GATC 8 cut(s) 58, 121, 433, 679, 880, 1054, 2064, 3049
LguI GCTCTTC 1 cut(s) 2412
LmnI GCTCC 5 cut(s) 322, 547, 2101, 2563, 2584
MaeI CTAG 7 cut(s) 69, 167, 201, 1235, 1668, 2267, 2985
MaeII ACGT 2 cut(s) 483, 1117
MaeIII GTNAC 6 cut(s) 620, 959, 1355, 1384, 1610, 1877
MalI GATC 8 cut(s) 60, 123, 435, 681, 882, 1056, 2066, 3051
MboI GATC 8 cut(s) 58, 121, 433, 679, 880, 1054, 2064, 3049
MboII GAAGA 9 cut(s) 883, 1141, 2429, 2504, 2698, 2789, 2846, 2888, 3000
MfeI CAATTG 2 cut(s) 580, 2463
MflI RGATCY 4 cut(s) 679, 880, 2064, 3049
MhlI GDGCHC 1 cut(s) 565
MlsI TGGCCA 1 cut(s) 419
MluNI TGGCCA 1 cut(s) 419
MlyI GAGTC 3 cut(s) 2051, 2810, 2984
MmeI TCCRAC 3 cut(s) 1746, 2493, 2913
Mox20I TGGCCA 1 cut(s) 419
Mph1103I ATGCAT 4 cut(s) 265, 451, 1303, 1597
MroXI GAANNNNTTC 3 cut(s) 174, 1690, 2623
MscI TGGCCA 1 cut(s) 419
MslI CAYNNNNRTG 5 cut(s) 732, 966, 1884, 2322, 2817
Msp20I TGGCCA 1 cut(s) 419
MspA1I CMGCKG 2 cut(s) 664, 2408
MspI CCGG 4 cut(s) 20, 2248, 2768, 2972
MspR9I CCNGG 4 cut(s) 1043, 1814, 2798, 2808
MunI CAATTG 2 cut(s) 580, 2463
Mva1269I GAATGC 4 cut(s) 265, 449, 2529, 2845
MvaI CCWGG 4 cut(s) 1043, 1814, 2798, 2808
MvnI CGCG 2 cut(s) 140, 2716
NdeI CATATG 1 cut(s) 2814
NdeII GATC 8 cut(s) 58, 121, 433, 679, 880, 1054, 2064, 3049
NlaIV GGNNCC 3 cut(s) 271, 1149, 2151
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 5 cut(s) 959, 1355, 1384, 1610, 1877
NruI TCGCGA 1 cut(s) 140
NsiI ATGCAT 4 cut(s) 265, 451, 1303, 1597
NspI RCATGY 3 cut(s) 510, 1327, 1979
PaeI GCATGC 1 cut(s) 510
PagI TCATGA 1 cut(s) 376
PaqCI CACCTGC 2 cut(s) 2171, 2914
PceI AGGCCT 1 cut(s) 2623
PciI ACATGT 1 cut(s) 1975
PciSI GCTCTTC 1 cut(s) 2412
PctI GAATGC 4 cut(s) 265, 449, 2529, 2845
PdmI GAANNNNTTC 3 cut(s) 174, 1690, 2623
PfeI GAWTC 5 cut(s) 539, 574, 1691, 2879, 2936
PflMI CCANNNNNTGG 1 cut(s) 187
PinAI ACCGGT 1 cut(s) 19
PleI GAGTC 3 cut(s) 2051, 2809, 2983
PpsI GAGTC 3 cut(s) 2051, 2809, 2983
Ppu21I YACGTR 1 cut(s) 1118
PscI ACATGT 1 cut(s) 1975
PshAI GACNNNNGTC 1 cut(s) 2296
Psp6I CCWGG 4 cut(s) 1041, 1812, 2796, 2806
PspGI CCWGG 4 cut(s) 1041, 1812, 2796, 2806
PspN4I GGNNCC 3 cut(s) 271, 1149, 2151
PspPI GGNCC 2 cut(s) 270, 2245
PsrI GAACNNNNNNTAC 2 cut(s) 2593, 2625
PstI CTGCAG 3 cut(s) 2369, 2911, 3004
PstNI CAGNNNCTG 2 cut(s) 2408, 2741
PsuI RGATCY 4 cut(s) 679, 880, 2064, 3049
PvuII CAGCTG 1 cut(s) 2408
RruI TCGCGA 1 cut(s) 140
RseI CAYNNNNRTG 5 cut(s) 732, 966, 1884, 2322, 2817
SalI GTCGAC 1 cut(s) 2913
SapI GCTCTTC 1 cut(s) 2412
Sau3AI GATC 8 cut(s) 58, 121, 433, 679, 880, 1054, 2064, 3049
Sau96I GGNCC 2 cut(s) 270, 2245
SbfI CCTGCAGG 1 cut(s) 2911
ScaI AGTACT 2 cut(s) 2363, 2705
SchI GAGTC 3 cut(s) 2051, 2810, 2984
ScrFI CCNGG 4 cut(s) 1043, 1814, 2798, 2808
SdaI CCTGCAGG 1 cut(s) 2911
SduI GDGCHC 1 cut(s) 565
SfcI CTRYAG 4 cut(s) 1086, 2365, 2907, 3000
SinI GGWCC 1 cut(s) 2245
SmiMI CAYNNNNRTG 5 cut(s) 732, 966, 1884, 2322, 2817
SmlI CTYRAG 7 cut(s) 98, 1343, 1415, 1989, 2032, 2378, 2707
SmoI CTYRAG 7 cut(s) 98, 1343, 1415, 1989, 2032, 2378, 2707
SphI GCATGC 1 cut(s) 510
Sse8387I CCTGCAGG 1 cut(s) 2911
SseBI AGGCCT 1 cut(s) 2623
SsiI CCGC 6 cut(s) 227, 590, 664, 2099, 2649, 2923
SspI AATATT 2 cut(s) 744, 1332
SspMI CTAG 7 cut(s) 69, 167, 201, 1235, 1668, 2267, 2985
StuI AGGCCT 1 cut(s) 2623
StyD4I CCNGG 4 cut(s) 1041, 1812, 2796, 2806
StyI CCWWGG 5 cut(s) 68, 286, 420, 1373, 2004
TaaI ACNGT 8 cut(s) 174, 345, 675, 897, 1457, 2073, 2257, 2298
TaiI ACGT 2 cut(s) 486, 1120
TaqI TCGA 8 cut(s) 57, 120, 362, 899, 1155, 1365, 1525, 2914
TatI WGTACW 6 cut(s) 552, 789, 862, 2361, 2600, 2703
TauI GCSGC 1 cut(s) 593
TfiI GAWTC 5 cut(s) 539, 574, 1691, 2879, 2936
TscAI CASTG 7 cut(s) 760, 900, 951, 1438, 1572, 1933, 2111
TseFI GTSAC 5 cut(s) 959, 1355, 1384, 1610, 1877
Tsp45I GTSAC 5 cut(s) 959, 1355, 1384, 1610, 1877
TspGWI ACGGA 3 cut(s) 2069, 2741, 2932
TspRI CASTG 7 cut(s) 760, 900, 951, 1438, 1572, 1933, 2111
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 2245
XapI RAATTY 6 cut(s) 28, 830, 1001, 1199, 1966, 2995
XceI RCATGY 3 cut(s) 510, 1327, 1979
XcmI CCANNNNNNNNNTGG 1 cut(s) 1708
XmaJI CCTAGG 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 2914
XmnI GAANNNNTTC 3 cut(s) 174, 1690, 2623
XspI CTAG 7 cut(s) 69, 167, 201, 1235, 1668, 2267, 2985
ZrmI AGTACT 2 cut(s) 2363, 2705
Zsp2I ATGCAT 4 cut(s) 265, 451, 1303, 1597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.