MD02G1088500.v1.1

RNA polymerase-associated protein CTR9 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0016235
Physical Location & Seq
Forward (+)
6974283 .. 6982788
8506 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1088500.v1.1.491

Sequence Viewer

Length: 3273 bp
ATGGCGTGCGTGTATATACCGGTGCAGAATTCGGAGGAGGAGGTGATGGTGGTTCTGGATCAGCTCCCTAAGGAAGCTACAGATATCATCGACATCCTCAAGGCCGAGCAAGCATCTCTCGATCTCTGGCTCATTATCGCGAGAGAGTATTTCAAACAAGGAAAGCTTGACCAGTTCCGCCAGATTTTGGAAGAAGGCTCCGGTGCTGAAATTGATGAATATTATTCTGATGTTCGTTATGAAAGGATTGCCATCTTGAATGCTTTAGGGGCCTACTACACCTACCTTGGAAAAATTGAGACAAAACAGAGAGAAAAGGAGGAGCATTTTATTTTAGCAACACAATTCTACAACAAAGCGTCGAGAATCGACATTCACGAGCCTTCTACTTGGGTTGGGAAAGGTCAGCTTTTACTGGCTAAAGGTGAAGTAGATCAGGCATTTTCTGCATTCAAGATTGTATTAGATGGAGACCGAGATAATGTTCCTGCCCTTTTGGGTCAGGCATGCGTTGAATTCAATCGTGGGCACTATTCAGATTCATTGGAGCTCTACAAGAGGGCCCTGCAAGTACATCCTGATTGTCCTGCCGCTGTAAGGCTTGGCATAGGTCTCTGTCGTTACAAAATGGGTCAATTTGATAAAGCTCGGCAGGCCTTTGAACGGGTTCTACAGTTAGATCCAGAAAATGTTGAGGCTCTTGTTGCACTTGCAATTCTGGATTTGCATGCAAATACAGCCGCTGGAATAAGGAGAGGAATGGAAAAAATGCAAAGAGCTTTTGAGATTTACCCTTATTGTGCAATGGCCTTGAACTATTTGGCCAACCATTTTTTCTACACTGGTCAGCACTTTCTGGTTGAGCAATTAACGGAAACTGCACTGGCTGTGACCAACCATGGACCGACAAAGTCACATTCCTACTACAACTTGGCGCGATCTTACCATAGCAAGGGTGACTATGATAAGGCTGGAGTCTACTACATGGCATCTGTTAAGGAAATCAGTAAACCCCATGAGTTCGTATTTCCTTATTATGGTTTGGGACAAGTACAACTGAAGATGGGAGATCTTAGAAGTGCACTGTCGAACTTTGAAAAGGTTTTGGAGGTTTACCCTGATAATAGTGACACATTGAAAGTCCTTGGGCACATATATGTTCAGCTTGGGCAGACTGAGAAGGCCTTGGAATTTATGAGGAAGGCCACAAAAGTGGACCCAAATGATTCCCAGGCATTTCTTGACCTGGGGGAACTGTTGATTTCATCTGATGCTGGAGCTGCTCTGGATTGCCTAAAAACTGCACATAATCTTTTGAAAAAGGAAGGTCAAGAAGTACCAATTGAAGTTCTTAACAATCTTGGGGTTCTCCATTTTGAGAGGGGAGAATTTGAGCTTGCTCAACAAACTTTCAGGGAGGCACTAGGTGATGGAATATGGCTGGCCTTCATAGATGGTAAAGAAAACCCCCCATCTATTGATGCGAATGCGACTATTTCACAGTACAAGGACATGGGTATATTTCATCATCTTGAAAAAGAAGGTCACTTAGTCGAATTACCTTGGGATAAAGTCACAGCACTATTTAACCTGGCCAGATTACTTGAGCAGTTACATATCACTGAAACTGCAAGCATACTGTACCGTCTCATTTTGTTTAAGTATCCAGACTATGTAGATGCTTATCTGAGACTCGCTGCCCTGGCCAAAGCTCGAAATAACTTTCAACTAAGCATTGAACTGGTTAATGATGCTCTGAAGGTGAATAACAAGTGCCCAAATGCATTATTAATGCTTGGTGACTTGGAATTGAAAAATGATGACTGGGTTAAGGCAAAAGAAACCTTGCGGGCTGCTAGTGAAGCAACTGAAGGGAAGGATTCCTATGCCACCCTATCTCTGGGCAACTGGAACTACTTCGCGGCAATTCGCAATGAGAAGAGAAATCCCAAGTTGGAAGCTACACATCTGGAAAAATCCAAAGAACTCTACACTAAAGTCCTATCTCAACATTCTGCTAATTTGTATGCTGCCAATGGTGCCGGAGTGGTCTTTGCAGAGAAAGGTCACTTTGATGTTTCAAAAGACATTTTTACGCAGGTTCAAGAAGCTGCCAGTGGAAACATTTTTGTTCAGATGCCAGACGTGTGGATAAATTTGGCACATGTTTATTTTGCTCAAGGCAATTTTGCATTGGCTGTGAAAATGTATCAAAACTGCTTGAGAAAGTTCTTTAATAACACGGACTCTCAGATTCTACTCTATTTGGCTCGTACCCATTATGAAGCTGAGCAGTGGCAAGACTGCAAAAAGAGTCTACTGAGAGCCATTCATTTGGCACCTTCAAATTACACGCTGAGGTTTGATGCAGGCGTTGTAATGCAAAAGTTCTCAGCTTCAACGTTACAAAAGCCAAAGAAATCTGTTGATGAGGTGCGATCAACAGTTTCAGAGCTAGAAAATGCTGTTCGTTTATTTAGACAGTTGTCTGCTGCTTCCAGCCTTCACATCCATGGATTTGATGAGAAAAAAATTGATACCCATGTTGAGTATTGTAGTCACTTGCTTGATGCTGCGAGAGTTCACTTCAAAGCAGCTGAGCATGAGGAGCAGAAGATCAAGCACAAACAAGAAGTTGCTCGTCAAATGGCATTGGCTGAGGAGGCCCGTCGTAAGGCTGAAGAACAGAGGAAATTCCAGTTGGAGAGGAGAATGCAAGAGGATGAACTAAAGCGAGTGAGACAACAGGAGGAACAATTTGAACGCGTAAAGGAGCAATGGAAGAGCAGTACACCTGGTTCCAAGCGAAGGGAAAGGTCAGAAATGGATGATGAGGAGGGTGGGCATAGTGAAAAGAGACGGAGAAAGGGTGGAAAGAGGAGAAAGAAGGACAAGCACTCAAGATCACGCTATGAAACGGAGGGAGCAGAAGCTGAGATGATGGATGATCAGGAAGAACCGGAATATGAAGATGCCAACATGAATTACAGGGAGCCCATGGGTCAGATGAATGAGCAGGATGAAGAAGAGAATGTTCAAGATCATCTTGCAGCAGCTGGGCTTGAAGATTCTGACGCTGACGAGGAGGCTGCACTATCCACGGCTCGACGAAGGCGGGCATTTTCAGAATCTGATGATGATGAGCAACCAGAGCACCAACCTGAGTCCAGCCCTGTAAGAGAAAATTCTGCCGAGTTACAGAGTGACGGGGAAGGAAGAGAAGGTGGCGGTGATAAACTGGATGGAGACGCCGCTCTTGACGATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000785 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016020 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035327 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_16 TPR_2 TPR_6 TPR_8

Protein Analysis

1091

Amino Acids

124.19

Weight (kDa)

5.37

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 169 - 227 6.4e-06 Tetratricopeptide repeat
TPR_9 PF13371 174 - 236 1.4e-06 Tetratricopeptide repeat
TPR_1 PF00515 200 - 230 2.5e-07 Tetratricopeptide repeat
TPR_2 PF07719 202 - 230 2.4e-06 Tetratricopeptide repeat
TPR_12 PF13424 345 - 406 1.5e-07 Tetratricopeptide repeat
TPR_16 PF13432 346 - 409 6.3e-06 Tetratricopeptide repeat
TPR_19 PF14559 353 - 412 1.2e-09 Tetratricopeptide repeat
TPR_CcmH_CycH PF23914 373 - 474 1.2e-07 Cytochrome c-type biogenesis protein H TPR domain
TPR_8 PF13181 382 - 409 4.9e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08430 FvH4_1g08430
malus_domestica MD02G1088500.v1.1
prunus_persica Prupe.7G201100_v2.0.a1 Prupe.7G201100_v2.0.a1
pyrus_communis pycom02g07110
rosa_chinensis RchiOBHm_Chr2g0094531
rosa_laevigata RLG00000016499
rosa_multiflora Rmu_sc0004359.1_g000042
rosa_roxburghii Rroxscaffold_2G00147090
rosa_rugosa Rorug02G0044500
rosa_samantha Rh2AG092800 Rh2BG093000 Rh2CG095500 Rh2DG091900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2089
AccB1I GGYRCC 2 cut(s) 2039, 2338
AccB7I CCANNNNNTGG 1 cut(s) 187
AccBSI CCGCTC 1 cut(s) 3254
AccI GTMKAC 2 cut(s) 978, 2317
AccII CGCG 4 cut(s) 140, 937, 1922, 2766
AciI CCGC 8 cut(s) 178, 591, 741, 1849, 1922, 3115, 3228, 3252
AclI AACGTT 1 cut(s) 2402
AclWI GGATC 2 cut(s) 66, 674
AcoI YGGCCR 3 cut(s) 822, 1593, 1704
AcsI RAATTY 7 cut(s) 28, 515, 1190, 1388, 2155, 2693, 3184
AcuI CTGAAG 4 cut(s) 1079, 1778, 1890, 2700
AcyI GRCGYC 1 cut(s) 3249
AdeI CACNNNGTG 1 cut(s) 1427
AfaI GTAC 7 cut(s) 573, 1053, 1338, 1505, 1643, 2275, 2791
AfiI CCNNNNNNNGG 8 cut(s) 187, 597, 663, 952, 1037, 1900, 2674, 2808
AflIII ACRYGT 3 cut(s) 2145, 2164, 2764
AgeI ACCGGT 1 cut(s) 19
AjiI CACGTC 1 cut(s) 2146
AjnI CCWGG 5 cut(s) 1230, 1245, 1590, 1701, 2794
AjuI GAANNNNNNNTTGG 4 cut(s) 818, 850, 2684, 2716
AleI CACNNNNGTG 1 cut(s) 1211
Alw21I GWGCWC 3 cut(s) 552, 1084, 3156
Alw26I GTCTC 8 cut(s) 293, 465, 617, 1652, 1684, 2734, 2851, 3240
Alw44I GTGCAC 1 cut(s) 1080
AlwI GGATC 2 cut(s) 66, 674
AlwNI CAGNNNCTG 4 cut(s) 743, 2933, 3056, 3131
ApaI GGGCCC 1 cut(s) 565
ApaLI GTGCAC 1 cut(s) 1080
ApoI RAATTY 7 cut(s) 28, 515, 1190, 1388, 2155, 2693, 3184
AseI ATTAAT 1 cut(s) 1790
AsiGI ACCGGT 1 cut(s) 19
Asp700I GAANNNNTTC 2 cut(s) 666, 1916
AspLEI GCGC 1 cut(s) 937
AspS9I GGNCC 6 cut(s) 270, 561, 562, 902, 1216, 2665
AsuHPI GGTGA 7 cut(s) 55, 437, 968, 1439, 1774, 1811, 3242
AvaII GGWCC 2 cut(s) 902, 1216
AxyI CCTNAGG 1 cut(s) 69
BaeGI GKGCMC 5 cut(s) 531, 565, 1084, 1152, 1778
BaeI ACNNNNGTAYC 2 cut(s) 2529, 2562
BalI TGGCCA 3 cut(s) 824, 1595, 1706
BanI GGYRCC 2 cut(s) 2039, 2338
BanII GRGCYC 3 cut(s) 552, 565, 2997
BauI CACGAG 1 cut(s) 377
Bbv12I GWGCWC 3 cut(s) 552, 1084, 3156
BbvCI CCTCAGC 2 cut(s) 2357, 2658
BccI CCATC 9 cut(s) 40, 260, 461, 1057, 1424, 1448, 1480, 2935, 3236
BceAI ACGGC 1 cut(s) 3117
BcgI CGANNNNNNTGC 2 cut(s) 3071, 3105
BciT130I CCWGG 5 cut(s) 1232, 1247, 1592, 1703, 2796
BciVI GTATCC 1 cut(s) 1674
BclI TGATCA 1 cut(s) 2947
BcoDI GTCTC 8 cut(s) 293, 465, 617, 1652, 1684, 2734, 2851, 3240
BfaI CTAG 3 cut(s) 1424, 1857, 2456
BfmI CTRYAG 2 cut(s) 78, 671
BfuAI ACCTGC 1 cut(s) 2089
BfuI GTATCC 1 cut(s) 1674
BglII AGATCT 1 cut(s) 1069
BlpI GCTNAGC 2 cut(s) 2289, 2598
Bme1390I CCNGG 5 cut(s) 1232, 1247, 1592, 1703, 2796
Bme18I GGWCC 2 cut(s) 902, 1216
BmgBI CACGTC 1 cut(s) 2146
BmgT120I GGNCC 6 cut(s) 270, 561, 562, 902, 1216, 2665
BmiI GGNNCC 8 cut(s) 199, 271, 563, 1218, 2041, 2340, 2800, 2994
BmrFI CCNGG 5 cut(s) 1232, 1247, 1592, 1703, 2796
BmrI ACTGGG 1 cut(s) 1834
BmuI ACTGGG 1 cut(s) 1834
BoxI GACNNNNGTC 1 cut(s) 2485
BpmI CTGGAG 2 cut(s) 993, 1296
Bpu10I CCTNAGC 2 cut(s) 2357, 2658
Bpu1102I GCTNAGC 2 cut(s) 2289, 2598
BpuEI CTTGAG 5 cut(s) 83, 1625, 2163, 2242, 2884
BsaBI GATNNNNATC 2 cut(s) 251, 1683
BsaHI GRCGYC 1 cut(s) 3249
BsaI GGTCTC 2 cut(s) 465, 617
BsaWI WCCGGW 3 cut(s) 19, 200, 2959
BsaXI ACNNNNNCTCC 2 cut(s) 2854, 2884
Bsc4I CCNNNNNNNGG 8 cut(s) 187, 597, 663, 952, 1037, 1900, 2674, 2808
Bse118I RCCGGY 1 cut(s) 19
Bse21I CCTNAGG 1 cut(s) 69
Bse3DI GCAATG 3 cut(s) 810, 1939, 2783
Bse8I GATNNNNATC 2 cut(s) 251, 1683
BseBI CCWGG 5 cut(s) 1232, 1247, 1592, 1703, 2796
BseGI GGATG 8 cut(s) 93, 574, 2508, 2728, 2833, 2950, 3025, 3247
BseJI GATNNNNATC 2 cut(s) 251, 1683
BseLI CCNNNNNNNGG 8 cut(s) 187, 597, 663, 952, 1037, 1900, 2674, 2808
BseMI GCAATG 3 cut(s) 810, 1939, 2783
BseRI GAGGAG 9 cut(s) 50, 53, 335, 2621, 2675, 2722, 2849, 2893, 3098
BseSI GKGCMC 5 cut(s) 531, 565, 1084, 1152, 1778
BseYI CCCAGC 1 cut(s) 3056
BsgI GTGCAG 4 cut(s) 44, 864, 1287, 3075
Bsh1236I CGCG 4 cut(s) 140, 937, 1922, 2766
BshNI GGYRCC 2 cut(s) 2039, 2338
BshTI ACCGGT 1 cut(s) 19
BsiHKAI GWGCWC 3 cut(s) 552, 1084, 3156
BsiSI CCGG 4 cut(s) 20, 201, 2043, 2960
BslFI GGGAC 1 cut(s) 1059
BslI CCNNNNNNNGG 8 cut(s) 187, 597, 663, 952, 1037, 1900, 2674, 2808
BsmAI GTCTC 8 cut(s) 293, 465, 617, 1652, 1684, 2734, 2851, 3240
BsmBI CGTCTC 3 cut(s) 1652, 2851, 3240
BsmFI GGGAC 1 cut(s) 1059
BsmI GAATGC 4 cut(s) 265, 449, 1492, 2718
Bso31I GGTCTC 2 cut(s) 465, 617
Bsp120I GGGCCC 1 cut(s) 561
Bsp1286I GDGCHC 8 cut(s) 531, 552, 565, 1084, 1152, 1778, 2997, 3156
Bsp1720I GCTNAGC 2 cut(s) 2289, 2598
Bsp19I CCATGG 3 cut(s) 898, 2512, 2997
Bsp68I TCGCGA 1 cut(s) 140
BspACI CCGC 8 cut(s) 178, 591, 741, 1849, 1922, 3115, 3228, 3252
BspFNI CGCG 4 cut(s) 140, 937, 1922, 2766
BspLI GGNNCC 8 cut(s) 199, 271, 563, 1218, 2041, 2340, 2800, 2994
BspMI ACCTGC 1 cut(s) 2089
BspPI GGATC 2 cut(s) 66, 674
BspQI GCTCTTC 1 cut(s) 2777
BspT107I GGYRCC 2 cut(s) 2039, 2338
BspTNI GGTCTC 2 cut(s) 465, 617
BsrBI CCGCTC 1 cut(s) 3254
BsrDI GCAATG 3 cut(s) 810, 1939, 2783
BsrFI RCCGGY 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 19
BssNI GRCGYC 1 cut(s) 3249
BssSI CACGAG 1 cut(s) 377
BssT1I CCWWGG 7 cut(s) 286, 898, 1144, 1185, 1562, 2512, 2997
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 5 cut(s) 1232, 1247, 1592, 1703, 2796
Bst4CI ACNGT 8 cut(s) 675, 1086, 1257, 1503, 1641, 1646, 2446, 2484
Bst6I CTCTTC 4 cut(s) 1934, 2777, 3021, 3211
BstACI GRCGYC 1 cut(s) 3249
BstAPI GCANNNNNTGC 1 cut(s) 446
BstDSI CCRYGG 4 cut(s) 898, 2512, 2997, 3099
BstF5I GGATG 8 cut(s) 93, 574, 2508, 2728, 2833, 2950, 3025, 3247
BstFNI CGCG 4 cut(s) 140, 937, 1922, 2766
BstHHI GCGC 1 cut(s) 937
BstMAI GTCTC 8 cut(s) 293, 465, 617, 1652, 1684, 2734, 2851, 3240
BstNI CCWGG 5 cut(s) 1232, 1247, 1592, 1703, 2796
BstNSI RCATGY 3 cut(s) 510, 731, 2168
BstPAI GACNNNNGTC 1 cut(s) 2485
BstSCI CCNGG 5 cut(s) 1230, 1245, 1590, 1701, 2794
BstSFI CTRYAG 2 cut(s) 78, 671
BstSLI GKGCMC 5 cut(s) 531, 565, 1084, 1152, 1778
BstUI CGCG 4 cut(s) 140, 937, 1922, 2766
BstX2I RGATCY 2 cut(s) 679, 1069
BstXI CCANNNNNNTGG 3 cut(s) 1213, 2148, 2335
BstYI RGATCY 2 cut(s) 679, 1069
Bsu36I CCTNAGG 1 cut(s) 69
BsuI GTATCC 1 cut(s) 1674
BtgI CCRYGG 4 cut(s) 898, 2512, 2997, 3099
BtrI CACGTC 1 cut(s) 2146
BtsCI GGATG 8 cut(s) 93, 574, 2508, 2728, 2833, 2950, 3025, 3247
BtsI GCAGTG 1 cut(s) 2300
BtsIMutI CAGTG 6 cut(s) 840, 881, 1082, 1620, 2122, 2300
BtuMI TCGCGA 1 cut(s) 140
BveI ACCTGC 1 cut(s) 2089
CaiI CAGNNNCTG 4 cut(s) 743, 2933, 3056, 3131
CfoI GCGC 1 cut(s) 937
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 6 cut(s) 270, 561, 562, 902, 1216, 2665
CseI GACGC 3 cut(s) 348, 3083, 3257
CsiI ACCWGGT 1 cut(s) 2794
Csp6I GTAC 7 cut(s) 572, 1052, 1337, 1504, 1642, 2274, 2790
CspAI ACCGGT 1 cut(s) 19
CviQI GTAC 7 cut(s) 572, 1052, 1337, 1504, 1642, 2274, 2790
DraIII CACNNNGTG 1 cut(s) 1427
EaeI YGGCCR 3 cut(s) 822, 1593, 1704
Eam1104I CTCTTC 4 cut(s) 1934, 2777, 3021, 3211
EarI CTCTTC 4 cut(s) 1934, 2777, 3021, 3211
EciI GGCGGA 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 550
Eco130I CCWWGG 7 cut(s) 286, 898, 1144, 1185, 1562, 2512, 2997
Eco147I AGGCCT 2 cut(s) 656, 1184
Eco24I GRGCYC 3 cut(s) 552, 565, 2997
Eco31I GGTCTC 2 cut(s) 465, 617
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 902, 1216
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 4 cut(s) 1079, 1778, 1890, 2700
Eco81I CCTNAGG 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 550
EcoO109I RGGNCCY 3 cut(s) 270, 561, 562
EcoRI GAATTC 2 cut(s) 28, 515
EcoRII CCWGG 5 cut(s) 1230, 1245, 1590, 1701, 2794
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 7 cut(s) 286, 898, 1144, 1185, 1562, 2512, 2997
EcoT22I ATGCAT 1 cut(s) 1786
EcoT38I GRGCYC 3 cut(s) 552, 565, 2997
ErhI CCWWGG 7 cut(s) 286, 898, 1144, 1185, 1562, 2512, 2997
Esp3I CGTCTC 3 cut(s) 1652, 2851, 3240
FalI AAGNNNNNCTT 6 cut(s) 150, 182, 393, 425, 3030, 3062
FaqI GGGAC 1 cut(s) 1059
FauI CCCGC 2 cut(s) 1842, 3108
FbaI TGATCA 1 cut(s) 2947
FblI GTMKAC 2 cut(s) 978, 2317
FokI GGATG 8 cut(s) 80, 561, 2495, 2735, 2840, 2957, 3032, 3254
FriOI GRGCYC 3 cut(s) 552, 565, 2997
FspBI CTAG 3 cut(s) 1424, 1857, 2456
GlaI GCGC 1 cut(s) 936
GsaI CCCAGC 1 cut(s) 3060
GsuI CTGGAG 2 cut(s) 993, 1296
HapII CCGG 4 cut(s) 20, 201, 2043, 2960
HgaI GACGC 3 cut(s) 348, 3083, 3257
HhaI GCGC 1 cut(s) 937
Hin1I GRCGYC 1 cut(s) 3249
Hin6I GCGC 1 cut(s) 935
HinP1I GCGC 1 cut(s) 935
HindIII AAGCTT 1 cut(s) 164
HpaII CCGG 4 cut(s) 20, 201, 2043, 2960
HphI GGTGA 7 cut(s) 55, 437, 968, 1439, 1774, 1811, 3242
Hpy166II GTNNAC 8 cut(s) 979, 1010, 1082, 1114, 1216, 2318, 2584, 2792
Hpy8I GTNNAC 8 cut(s) 979, 1010, 1082, 1114, 1216, 2318, 2584, 2792
Hpy99I CGWCG 3 cut(s) 364, 2673, 3111
HpyCH4III ACNGT 8 cut(s) 675, 1086, 1257, 1503, 1641, 1646, 2446, 2484
HpyCH4IV ACGT 2 cut(s) 2145, 2402
HpySE526I ACGT 2 cut(s) 2145, 2402
Hsp92I GRCGYC 1 cut(s) 3249
HspAI GCGC 1 cut(s) 935
Ksp22I TGATCA 1 cut(s) 2947
LguI GCTCTTC 1 cut(s) 2777
LmnI GCTCC 9 cut(s) 69, 203, 322, 547, 1277, 2608, 2773, 2924, 2992
MabI ACCWGGT 1 cut(s) 2794
MaeI CTAG 3 cut(s) 1424, 1857, 2456
MaeII ACGT 2 cut(s) 2145, 2402
MbiI CCGCTC 1 cut(s) 3254
MfeI CAATTG 1 cut(s) 1341
MflI RGATCY 2 cut(s) 679, 1069
MhlI GDGCHC 8 cut(s) 531, 552, 565, 1084, 1152, 1778, 2997, 3156
MlsI TGGCCA 3 cut(s) 824, 1595, 1706
MluI ACGCGT 1 cut(s) 2764
MluNI TGGCCA 3 cut(s) 824, 1595, 1706
MlyI GAGTC 5 cut(s) 984, 1686, 2240, 2323, 3173
MmeI TCCRAC 2 cut(s) 1935, 2682
Mox20I TGGCCA 3 cut(s) 824, 1595, 1706
Mph1103I ATGCAT 1 cut(s) 1786
MroXI GAANNNNTTC 2 cut(s) 666, 1916
MscI TGGCCA 3 cut(s) 824, 1595, 1706
MslI CAYNNNNRTG 4 cut(s) 1155, 1211, 2073, 2511
Msp20I TGGCCA 3 cut(s) 824, 1595, 1706
MspA1I CMGCKG 4 cut(s) 593, 743, 2597, 3056
MspI CCGG 4 cut(s) 20, 201, 2043, 2960
MspR9I CCNGG 5 cut(s) 1232, 1247, 1592, 1703, 2796
MunI CAATTG 1 cut(s) 1341
Mva1269I GAATGC 4 cut(s) 265, 449, 1492, 2718
MvaI CCWGG 5 cut(s) 1232, 1247, 1592, 1703, 2796
MvnI CGCG 4 cut(s) 140, 937, 1922, 2766
NcoI CCATGG 3 cut(s) 898, 2512, 2997
NlaIV GGNNCC 8 cut(s) 199, 271, 563, 1218, 2041, 2340, 2800, 2994
NmeAIII GCCGAG 3 cut(s) 130, 628, 3217
NruI TCGCGA 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 1786
NspI RCATGY 3 cut(s) 510, 731, 2168
OliI CACNNNNGTG 1 cut(s) 1211
PaeI GCATGC 2 cut(s) 510, 731
PceI AGGCCT 2 cut(s) 656, 1184
PciI ACATGT 1 cut(s) 2164
PciSI GCTCTTC 1 cut(s) 2777
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PctI GAATGC 4 cut(s) 265, 449, 1492, 2718
PdmI GAANNNNTTC 2 cut(s) 666, 1916
PfeI GAWTC 7 cut(s) 366, 539, 1226, 1880, 2254, 3068, 3128
PflFI GACNNNGTC 1 cut(s) 910
PflMI CCANNNNNTGG 1 cut(s) 187
PinAI ACCGGT 1 cut(s) 19
PleI GAGTC 5 cut(s) 983, 1686, 2240, 2322, 3172
PpsI GAGTC 5 cut(s) 983, 1686, 2240, 2322, 3172
PscI ACATGT 1 cut(s) 2164
PshAI GACNNNNGTC 1 cut(s) 2485
PshBI ATTAAT 1 cut(s) 1790
Psp124BI GAGCTC 1 cut(s) 552
Psp1406I AACGTT 1 cut(s) 2402
Psp6I CCWGG 5 cut(s) 1230, 1245, 1590, 1701, 2794
PspFI CCCAGC 1 cut(s) 3056
PspGI CCWGG 5 cut(s) 1230, 1245, 1590, 1701, 2794
PspN4I GGNNCC 8 cut(s) 199, 271, 563, 1218, 2041, 2340, 2800, 2994
PspOMI GGGCCC 1 cut(s) 561
PspPI GGNCC 6 cut(s) 270, 561, 562, 902, 1216, 2665
PsrI GAACNNNNNNTAC 4 cut(s) 654, 686, 2782, 2814
PstNI CAGNNNCTG 4 cut(s) 743, 2933, 3056, 3131
PsuI RGATCY 2 cut(s) 679, 1069
PsyI GACNNNGTC 1 cut(s) 910
PvuII CAGCTG 2 cut(s) 2597, 3056
RruI TCGCGA 1 cut(s) 140
RsaI GTAC 7 cut(s) 573, 1053, 1338, 1505, 1643, 2275, 2791
RsaNI GTAC 7 cut(s) 572, 1052, 1337, 1504, 1642, 2274, 2790
RseI CAYNNNNRTG 4 cut(s) 1155, 1211, 2073, 2511
SacI GAGCTC 1 cut(s) 552
SapI GCTCTTC 1 cut(s) 2777
Sau96I GGNCC 6 cut(s) 270, 561, 562, 902, 1216, 2665
SchI GAGTC 5 cut(s) 984, 1686, 2240, 2323, 3173
ScrFI CCNGG 5 cut(s) 1232, 1247, 1592, 1703, 2796
SduI GDGCHC 8 cut(s) 531, 552, 565, 1084, 1152, 1778, 2997, 3156
SexAI ACCWGGT 1 cut(s) 2794
SfcI CTRYAG 2 cut(s) 78, 671
SinI GGWCC 2 cut(s) 902, 1216
SmiMI CAYNNNNRTG 4 cut(s) 1155, 1211, 2073, 2511
SmlI CTYRAG 5 cut(s) 98, 1604, 2178, 2221, 2899
SmoI CTYRAG 5 cut(s) 98, 1604, 2178, 2221, 2899
SphI GCATGC 2 cut(s) 510, 731
SseBI AGGCCT 2 cut(s) 656, 1184
SsiI CCGC 8 cut(s) 178, 591, 741, 1849, 1922, 3115, 3228, 3252
SspI AATATT 1 cut(s) 221
SspMI CTAG 3 cut(s) 1424, 1857, 2456
SstI GAGCTC 1 cut(s) 552
StuI AGGCCT 2 cut(s) 656, 1184
StyD4I CCNGG 5 cut(s) 1230, 1245, 1590, 1701, 2794
StyI CCWWGG 7 cut(s) 286, 898, 1144, 1185, 1562, 2512, 2997
TaaI ACNGT 8 cut(s) 675, 1086, 1257, 1503, 1641, 1646, 2446, 2484
TaiI ACGT 2 cut(s) 2148, 2405
TaqI TCGA 8 cut(s) 90, 120, 362, 369, 1088, 1554, 1714, 3106
TaqII GACCGA 2 cut(s) 489, 919
TatI WGTACW 4 cut(s) 571, 1051, 1503, 2789
TauI GCSGC 4 cut(s) 593, 743, 1925, 3254
TfiI GAWTC 7 cut(s) 366, 539, 1226, 1880, 2254, 3068, 3128
TscAI CASTG 6 cut(s) 847, 888, 1089, 1627, 2122, 2300
TspGWI ACGGA 4 cut(s) 887, 2258, 2875, 2933
TspRI CASTG 6 cut(s) 847, 888, 1089, 1627, 2122, 2300
Tth111I GACNNNGTC 1 cut(s) 910
Van91I CCANNNNNTGG 1 cut(s) 187
VneI GTGCAC 1 cut(s) 1080
VpaK11BI GGWCC 2 cut(s) 902, 1216
VspI ATTAAT 1 cut(s) 1790
XapI RAATTY 7 cut(s) 28, 515, 1190, 1388, 2155, 2693, 3184
XceI RCATGY 3 cut(s) 510, 731, 2168
XcmI CCANNNNNNNNNTGG 1 cut(s) 1897
XmiI GTMKAC 2 cut(s) 978, 2317
XmnI GAANNNNTTC 2 cut(s) 666, 1916
XspI CTAG 3 cut(s) 1424, 1857, 2456
Zsp2I ATGCAT 1 cut(s) 1786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.