FvH4_1g09832
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018346
Physical Location & Seq
Forward (+)
5356213 .. 5356428
216 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09832.t1

Sequence Viewer

Length: 216 bp
ATGAATAATGAGATTCAGGCTCTTGAAGACAATAGAACATGGTCACTGGTCCCTTTGCCTCACGGTCAGCGTCCAATCGGCTGTAAATGGGTCTTCAAGATCAAGTACAATTCTGACGGCACAGTTGAACGATACAAGGCGCGGCTTGTTGCCAAGGGATTCAATCAGAGAGAAGGGATCGATTACAAGGACACTTTTGCTCCGGTGGCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

72

Amino Acids

8.21

Weight (kDa)

9.46

Isoelectric Point (pI)

13.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 11 - 71 1.3e-19 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09832
malus_domestica MD17G1125600.v1.1
pyrus_communis pycom07g08290 pycom08g03650 pycom10g05700 pycom13g21050 pycom17g16760
rosa_wichuraiana Rw1G014600 Rw4G005310 Rw4G016610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 142
AciI CCGC 1 cut(s) 142
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 207
AfaI GTAC 1 cut(s) 107
AgsI TTSAA 4 cut(s) 26, 97, 128, 163
AlwI GGATC 1 cut(s) 185
AoxI GGCC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 49
AvaII GGWCC 1 cut(s) 49
BalI TGGCCA 1 cut(s) 209
BbsI GAAGAC 2 cut(s) 33, 85
BceAI ACGGC 1 cut(s) 133
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 51
BpiI GAAGAC 2 cut(s) 33, 85
Bsa29I ATCGAT 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bse1I ACTGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 209
BshVI ATCGAT 1 cut(s) 180
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 99, 177
BspACI CCGC 1 cut(s) 142
BspANI GGCC 1 cut(s) 209
BspDI ATCGAT 1 cut(s) 180
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 99, 177
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 65, 124
BstFNI CGCG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 102, 180
BstMBI GATC 2 cut(s) 99, 177
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstUI CGCG 1 cut(s) 142
BstV2I GAAGAC 2 cut(s) 33, 85
Bsu15I ATCGAT 1 cut(s) 180
BsuRI GGCC 1 cut(s) 209
BsuTUI ATCGAT 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 44
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 49
ClaI ATCGAT 1 cut(s) 180
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 39
CviJI RGCY 4 cut(s) 20, 81, 145, 209
CviKI_1 RGCY 4 cut(s) 20, 81, 145, 209
CviQI GTAC 1 cut(s) 106
DpnI GATC 2 cut(s) 101, 179
DpnII GATC 2 cut(s) 99, 177
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 42
FaiI YATR 1 cut(s) 40
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 143
GlaI GCGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 143
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 203
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 142
Hin1II CATG 1 cut(s) 42
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 2 cut(s) 13, 159
HpaII CCGG 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 115, 168
Hpy188III TCNNGA 2 cut(s) 23, 97
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 2 cut(s) 65, 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
Hsp92II CATG 1 cut(s) 42
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 2 cut(s) 99, 177
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 2 cut(s) 2, 32
MaeIII GTNAC 1 cut(s) 42
MalI GATC 2 cut(s) 101, 179
MboI GATC 2 cut(s) 99, 177
MboII GAAGA 2 cut(s) 38, 85
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 1 cut(s) 109
MluNI TGGCCA 1 cut(s) 209
MnlI CCTC 1 cut(s) 69
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
Msp20I TGGCCA 1 cut(s) 209
MspI CCGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 2 cut(s) 99, 177
NlaIII CATG 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 13, 159
PkrI GCNGC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 49
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 2 cut(s) 99, 177
Sau96I GGNCC 1 cut(s) 49
SinI GGWCC 1 cut(s) 49
Sse9I AATT 1 cut(s) 109
SsiI CCGC 1 cut(s) 142
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 65, 124
TaqI TCGA 1 cut(s) 180
TasI AATT 1 cut(s) 109
TatI WGTACW 1 cut(s) 105
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 2 cut(s) 13, 159
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.