gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g09832 |
| malus_domestica | MD17G1125600.v1.1 |
| pyrus_communis | pycom07g08290 pycom08g03650 pycom10g05700 pycom13g21050 pycom17g16760 |
| rosa_wichuraiana | Rw1G014600 Rw4G005310 Rw4G016610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 473 |
| AfaI | GTAC | 2 cut(s) | 159, 322 |
| AgsI | TTSAA | 8 cut(s) | 73, 179, 204, 403, 444, 524, 583, 620 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 563, 595 |
| AluBI | AGCT | 3 cut(s) | 308, 437, 568 |
| AluI | AGCT | 3 cut(s) | 308, 437, 568 |
| Alw26I | GTCTC | 1 cut(s) | 369 |
| ApoI | RAATTY | 1 cut(s) | 473 |
| AspS9I | GGNCC | 1 cut(s) | 383 |
| AsuHPI | GGTGA | 2 cut(s) | 281, 404 |
| AvaII | GGWCC | 1 cut(s) | 383 |
| BbsI | GAAGAC | 1 cut(s) | 141 |
| BccI | CCATC | 2 cut(s) | 191, 311 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 275, 309 |
| BciVI | GTATCC | 1 cut(s) | 658 |
| BclI | TGATCA | 2 cut(s) | 394, 496 |
| BcoDI | GTCTC | 1 cut(s) | 369 |
| BfaI | CTAG | 2 cut(s) | 155, 434 |
| BfmI | CTRYAG | 1 cut(s) | 669 |
| BfuI | GTATCC | 1 cut(s) | 658 |
| Bme18I | GGWCC | 1 cut(s) | 383 |
| BmgT120I | GGNCC | 1 cut(s) | 383 |
| BoxI | GACNNNNGTC | 1 cut(s) | 381 |
| BpiI | GAAGAC | 1 cut(s) | 141 |
| BpuEI | CTTGAG | 2 cut(s) | 72, 516 |
| BsaJI | CCNNGG | 1 cut(s) | 708 |
| Bse1I | ACTGG | 2 cut(s) | 386, 417 |
| Bse3DI | GCAATG | 1 cut(s) | 561 |
| BseDI | CCNNGG | 1 cut(s) | 708 |
| BseMI | GCAATG | 1 cut(s) | 561 |
| BseMII | CTCAG | 1 cut(s) | 243 |
| BseNI | ACTGG | 2 cut(s) | 386, 417 |
| BslFI | GGGAC | 1 cut(s) | 500 |
| BsmAI | GTCTC | 1 cut(s) | 369 |
| BsmFI | GGGAC | 1 cut(s) | 500 |
| Bsp143I | GATC | 2 cut(s) | 394, 496 |
| BspCNI | CTCAG | 1 cut(s) | 242 |
| BsrDI | GCAATG | 1 cut(s) | 561 |
| BsrI | ACTGG | 2 cut(s) | 386, 417 |
| BssECI | CCNNGG | 1 cut(s) | 708 |
| BssMI | GATC | 2 cut(s) | 394, 496 |
| BssT1I | CCWWGG | 1 cut(s) | 708 |
| Bst4CI | ACNGT | 1 cut(s) | 699 |
| Bst6I | CTCTTC | 1 cut(s) | 267 |
| BstC8I | GCNNGC | 2 cut(s) | 306, 516 |
| BstDEI | CTNAG | 3 cut(s) | 130, 229, 720 |
| BstKTI | GATC | 2 cut(s) | 397, 499 |
| BstMAI | GTCTC | 1 cut(s) | 369 |
| BstMBI | GATC | 2 cut(s) | 394, 496 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 381 |
| BstSFI | CTRYAG | 1 cut(s) | 669 |
| BstV2I | GAAGAC | 1 cut(s) | 141 |
| BsuI | GTATCC | 1 cut(s) | 658 |
| BtsIMutI | CAGTG | 1 cut(s) | 237 |
| Cac8I | GCNNGC | 2 cut(s) | 306, 516 |
| Cfr13I | GGNCC | 1 cut(s) | 383 |
| Csp6I | GTAC | 2 cut(s) | 158, 321 |
| CviAII | CATG | 5 cut(s) | 33, 248, 314, 500, 577 |
| CviJI | RGCY | 5 cut(s) | 308, 437, 568, 707, 714 |
| CviKI_1 | RGCY | 5 cut(s) | 308, 437, 568, 707, 714 |
| CviQI | GTAC | 2 cut(s) | 158, 321 |
| DdeI | CTNAG | 3 cut(s) | 130, 229, 720 |
| DpnI | GATC | 2 cut(s) | 396, 498 |
| DpnII | GATC | 2 cut(s) | 394, 496 |
| Eam1104I | CTCTTC | 1 cut(s) | 267 |
| EarI | CTCTTC | 1 cut(s) | 267 |
| Eco130I | CCWWGG | 1 cut(s) | 708 |
| Eco47I | GGWCC | 1 cut(s) | 383 |
| EcoRI | GAATTC | 1 cut(s) | 473 |
| EcoT14I | CCWWGG | 1 cut(s) | 708 |
| ErhI | CCWWGG | 1 cut(s) | 708 |
| FaeI | CATG | 5 cut(s) | 36, 251, 317, 503, 580 |
| FaqI | GGGAC | 1 cut(s) | 500 |
| FatI | CATG | 5 cut(s) | 32, 247, 313, 499, 576 |
| FbaI | TGATCA | 2 cut(s) | 394, 496 |
| FspBI | CTAG | 2 cut(s) | 155, 434 |
| Hin1II | CATG | 5 cut(s) | 36, 251, 317, 503, 580 |
| HinfI | GANTC | 3 cut(s) | 102, 182, 572 |
| HphI | GGTGA | 2 cut(s) | 281, 404 |
| Hpy166II | GTNNAC | 2 cut(s) | 607, 649 |
| Hpy188I | TCNGA | 2 cut(s) | 55, 187 |
| Hpy8I | GTNNAC | 2 cut(s) | 607, 649 |
| HpyCH4III | ACNGT | 1 cut(s) | 699 |
| HpyCH4V | TGCA | 7 cut(s) | 14, 122, 251, 304, 332, 539, 639 |
| HpyF3I | CTNAG | 3 cut(s) | 130, 229, 720 |
| Hsp92II | CATG | 5 cut(s) | 36, 251, 317, 503, 580 |
| Ksp22I | TGATCA | 2 cut(s) | 394, 496 |
| Kzo9I | GATC | 2 cut(s) | 394, 496 |
| LpnPI | CCDG | 5 cut(s) | 399, 430, 524, 554, 657 |
| MaeI | CTAG | 2 cut(s) | 155, 434 |
| MaeIII | GTNAC | 1 cut(s) | 502 |
| MalI | GATC | 2 cut(s) | 396, 498 |
| MboI | GATC | 2 cut(s) | 394, 496 |
| MboII | GAAGA | 5 cut(s) | 31, 146, 191, 284, 559 |
| MfeI | CAATTG | 3 cut(s) | 398, 444, 630 |
| MluCI | AATT | 8 cut(s) | 28, 123, 204, 398, 444, 473, 519, 630 |
| MnlI | CCTC | 4 cut(s) | 96, 402, 540, 553 |
| MseI | TTAA | 2 cut(s) | 348, 426 |
| MslI | CAYNNNNRTG | 1 cut(s) | 230 |
| MunI | CAATTG | 3 cut(s) | 398, 444, 630 |
| NdeII | GATC | 2 cut(s) | 394, 496 |
| NlaIII | CATG | 5 cut(s) | 36, 251, 317, 503, 580 |
| NmeAIII | GCCGAG | 1 cut(s) | 264 |
| PfeI | GAWTC | 3 cut(s) | 102, 182, 572 |
| PshAI | GACNNNNGTC | 1 cut(s) | 381 |
| PspPI | GGNCC | 1 cut(s) | 383 |
| RsaI | GTAC | 2 cut(s) | 159, 322 |
| RsaNI | GTAC | 2 cut(s) | 158, 321 |
| RseI | CAYNNNNRTG | 1 cut(s) | 230 |
| SaqAI | TTAA | 2 cut(s) | 348, 426 |
| Sau3AI | GATC | 2 cut(s) | 394, 496 |
| Sau96I | GGNCC | 1 cut(s) | 383 |
| SetI | ASST | 6 cut(s) | 295, 310, 394, 439, 570, 594 |
| SfcI | CTRYAG | 1 cut(s) | 669 |
| SinI | GGWCC | 1 cut(s) | 383 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 230 |
| SmlI | CTYRAG | 2 cut(s) | 87, 531 |
| SmoI | CTYRAG | 2 cut(s) | 87, 531 |
| Sse9I | AATT | 8 cut(s) | 28, 123, 204, 398, 444, 473, 519, 630 |
| SspMI | CTAG | 2 cut(s) | 155, 434 |
| StyI | CCWWGG | 1 cut(s) | 708 |
| TaaI | ACNGT | 1 cut(s) | 699 |
| TaqI | TCGA | 2 cut(s) | 285, 477 |
| TasI | AATT | 8 cut(s) | 28, 123, 204, 398, 444, 473, 519, 630 |
| TatI | WGTACW | 1 cut(s) | 157 |
| TfiI | GAWTC | 3 cut(s) | 102, 182, 572 |
| Tru1I | TTAA | 2 cut(s) | 348, 426 |
| Tru9I | TTAA | 2 cut(s) | 348, 426 |
| TscAI | CASTG | 1 cut(s) | 237 |
| TspDTI | ATGAA | 1 cut(s) | 21 |
| TspRI | CASTG | 1 cut(s) | 237 |
| VpaK11BI | GGWCC | 1 cut(s) | 383 |
| XapI | RAATTY | 1 cut(s) | 473 |
| XspI | CTAG | 2 cut(s) | 155, 434 |