FvH4_1g10490

phosphatase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
5734303 .. 5741864
7562 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10490.t1

Sequence Viewer

Length: 1794 bp
ATGACGGAGGAGAAAGGTGAAGGTGCGCCGAAGCTTTACACGCGAATGCGGCTATGGGAGTTTCCGGATCAGTATGTGATCGAGCCTACTGATGGATCCAACGGCTCGTCTTTGGCTGTTAGTCGTGTCGATGGCTCCATGAGCCTCATTGAGAAGCTTCCAGAATCCAGCTCTGTTCGTGTTCCGAAAATCAGGACTATTTTCGGTGTGGCTGGGGTGCTCAAGCTCGTAGCAGGGTCATATTTGATGGTTATAACGGAGCGGGAAACTGTTGGTACATACTTGGGGCATCCTATCTATAAAGTTTCTTCGTTTAAGGTTTTTCCGTGTGATCATTCCTTAAGGAACTCCCCTGCAGATCAGAAAAAGATGGAGACCGAGTTTTCTGTGCTGCTAAACATAGCAGAGAGGACTCCTGGTCTGTACTTCTCGTACGAGGCCAACTTAACACTGAGTTCGCAACGATTGAATGATTTAGGCGGCGAATCTAAAGTGCTTCCTCTTTGGAGACAGGCAGAGCCTAGATTTCTTTGGAACAATTATATGTTGGAGAACCTCATTGATAACAAGCTTGATCCATACCTACTTCCTATTGTTCAAGGCAGTTATCATCATTTTCAAGCAGCCATTGGAAAAGATATTATCGATGTTACTCTGATTGCTAGGAGATGCACTAGGCGAAATGGTACTCGGATGTGGAGAAGAGGGGCTGATTCTGATGGCTATGTAGCAAATTTTGTTGAAACAGAGCAGATTATGCACTTGAATGGGTTTACTGCATCATTTGTCCAGGTTAGGGGGTCAATTCCATTACTTTGGGATCAAATTGTTGATTTGACATATAAGCCTAAGTTTGAAATTGTGCGACTTGAGGAAGCGCCGCGAGTGGCAGAGAGGCATTTTCTGGATTTAAGAAAAAAGTATGGGGCAGTGTTAGCTGTTGATCTTGTCAACACGCATGGAGGTGAAGGACGTTTGAGTGAAAAATTTGCAAATGCAATGCAGCATATCGTGAGTGATGATCTAAGATATTGGCACTTCGATTTTCATCATATATGTGGACATGTCCATTTTGAGCGCCTCTCTATCCTTTATGAACAAATAGTAGATTTTCTTGACAGAAACGGGTATCTTCTATTGAATGAAAAGGGTGAGAAAATGAAGGAGCAATTAGGAGTTGTAAGGACCAATTGCATTGATTGCTTAGATCGTACAAATGTTACCCAGAGTATGATAGGCCGAAATATGTTGGAATGCCAACTTAGGAGGCTTGGCATTTTTGCTGCTGAGGAAACTATTAGCTCACACCCCAATTTAGATGAATGCTTTAAAATTTTGTGGGCTGATCATGGGGATGATGTAAGCATGCAATATTCTGGCACTCCTGCTTTGAAAGGGGATTTTGTAAGATGTGGCCAGCGGACAATGCAAGGTCTGGTTAAGGATGGAATCAATTCCCTTCTACGCTATTACTACAATAACTTCTGTGATGGAACTAAACAGGATGCAATTGACCTCCTGCAAGGACATTACATTGTCTCAGTCAGCAAAGATATGACAGTACCATCTCAAAAGAAAGGACTTGAGGCTGTTGCTTCATTTCCTCTGGCTTTGTCATTCGTTTTGACTGGGTTCTTTTTTGCAACTTTGTCATTGAGGCAAGTTAGGTACGATCTACGGCACTTGTTCTTTTCATTTCTGTGGGCTGGTCTAAGTGTGGCTATAGCTGCATTTGTGAGGGCCAATGGGCGGATTTTCTGCAACAGACCTCGTCTGCACAAGCCTCGGTCTTGA

Protein Analysis

598

Amino Acids

68.03

Weight (kDa)

8.2

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syja_N PF02383 68 - 353 2e-81 SacI homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
AccBSI CCGCTC 1 cut(s) 262
AccII CGCG 2 cut(s) 43, 883
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 6 cut(s) 49, 262, 480, 881, 1420, 1750
AclWI GGATC 5 cut(s) 75, 90, 103, 569, 828
AcoI YGGCCR 1 cut(s) 1414
AcsI RAATTY 3 cut(s) 733, 986, 1332
AfaI GTAC 7 cut(s) 277, 425, 434, 688, 1213, 1563, 1670
AfiI CCNNNNNNNGG 3 cut(s) 92, 796, 1749
AflII CTTAAG 1 cut(s) 340
AflIII ACRYGT 1 cut(s) 1063
AgsI TTSAA 8 cut(s) 469, 599, 620, 743, 766, 857, 1141, 1393
AhdI GACNNNNNGTC 1 cut(s) 417
AjnI CCWGG 2 cut(s) 415, 789
AluBI AGCT 8 cut(s) 34, 157, 171, 226, 571, 938, 1302, 1727
AluI AGCT 8 cut(s) 34, 157, 171, 226, 571, 938, 1302, 1727
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 3 cut(s) 368, 502, 1543
AlwI GGATC 5 cut(s) 75, 90, 103, 569, 828
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 4 cut(s) 438, 1237, 1414, 1740
ApeKI GCWGC 5 cut(s) 391, 623, 1003, 1283, 1727
ApoI RAATTY 3 cut(s) 733, 986, 1332
Asp700I GAANNNNTTC 1 cut(s) 1453
AspLEI GCGC 3 cut(s) 28, 880, 1080
AspS9I GGNCC 2 cut(s) 1185, 1740
AsuHPI GGTGA 3 cut(s) 29, 977, 1163
AvaII GGWCC 1 cut(s) 1185
BalI TGGCCA 1 cut(s) 1416
BamHI GGATCC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 1287
BbvI GCAGC 5 cut(s) 378, 635, 1015, 1270, 1714
BccI CCATC 8 cut(s) 86, 125, 241, 364, 713, 1439, 1484, 1573
BceAI ACGGC 2 cut(s) 118, 1694
BcgI CGANNNNNNTGC 1 cut(s) 1766
BciT130I CCWGG 2 cut(s) 417, 791
BclI TGATCA 2 cut(s) 331, 1345
BcoDI GTCTC 3 cut(s) 368, 502, 1543
BfaI CTAG 3 cut(s) 522, 663, 675
BfmI CTRYAG 2 cut(s) 354, 1722
BfoI RGCGCY 2 cut(s) 881, 1081
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 8 cut(s) 50, 392, 481, 624, 881, 1004, 1284, 1728
BlsI GCNGC 8 cut(s) 51, 393, 482, 625, 882, 1005, 1285, 1729
Bme1390I CCNGG 2 cut(s) 417, 791
Bme18I GGWCC 1 cut(s) 1185
BmeRI GACNNNNNGTC 1 cut(s) 417
BmgT120I GGNCC 2 cut(s) 1185, 1740
BmiI GGNNCC 2 cut(s) 97, 136
BmrFI CCNGG 2 cut(s) 417, 791
BmrI ACTGGG 1 cut(s) 1638
BmsI GCATC 4 cut(s) 298, 659, 788, 1495
BmuI ACTGGG 1 cut(s) 1638
BplI GAGNNNNNCTC 2 cut(s) 1067, 1099
Bpu10I CCTNAGC 1 cut(s) 1287
BpuEI CTTGAG 3 cut(s) 206, 890, 1604
Bsa29I ATCGAT 1 cut(s) 645
BsaBI GATNNNNATC 1 cut(s) 1047
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 1784
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 796, 1749
Bse1I ACTGG 1 cut(s) 1633
Bse3DI GCAATG 1 cut(s) 1005
Bse8I GATNNNNATC 1 cut(s) 1047
BseAI TCCGGA 1 cut(s) 64
BseBI CCWGG 2 cut(s) 417, 791
BseCI ATCGAT 1 cut(s) 645
BseDI CCNNGG 1 cut(s) 1784
BseGI GGATG 5 cut(s) 289, 699, 1360, 1450, 1510
BseJI GATNNNNATC 1 cut(s) 1047
BseLI CCNNNNNNNGG 3 cut(s) 92, 796, 1749
BseMI GCAATG 1 cut(s) 1005
BseMII CTCAG 3 cut(s) 443, 1278, 1554
BseNI ACTGG 1 cut(s) 1633
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 5 cut(s) 378, 635, 1015, 1270, 1714
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 1760
Bsh1236I CGCG 2 cut(s) 43, 883
BshFI GGCC 4 cut(s) 440, 1239, 1416, 1742
BshVI ATCGAT 1 cut(s) 645
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 65
BsiWI CGTACG 1 cut(s) 432
BslI CCNNNNNNNGG 3 cut(s) 92, 796, 1749
BsmAI GTCTC 3 cut(s) 368, 502, 1543
BsmI GAATGC 3 cut(s) 51, 1259, 1328
BsnI GGCC 4 cut(s) 440, 1239, 1416, 1742
Bso31I GGTCTC 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 222
Bsp13I TCCGGA 1 cut(s) 64
BspACI CCGC 6 cut(s) 49, 262, 480, 881, 1420, 1750
BspANI GGCC 4 cut(s) 440, 1239, 1416, 1742
BspCNI CTCAG 3 cut(s) 444, 1279, 1553
BspDI ATCGAT 1 cut(s) 645
BspEI TCCGGA 1 cut(s) 64
BspFNI CGCG 2 cut(s) 43, 883
BspLI GGNNCC 2 cut(s) 97, 136
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 5 cut(s) 75, 90, 103, 569, 828
BspTI CTTAAG 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 368
BsrBI CCGCTC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 1005
BsrI ACTGG 1 cut(s) 1633
BssECI CCNNGG 1 cut(s) 1784
Bst2UI CCWGG 2 cut(s) 417, 791
Bst4CI ACNGT 2 cut(s) 271, 1561
Bst6I CTCTTC 1 cut(s) 697
BstAFI CTTAAG 1 cut(s) 340
BstAPI GCANNNNNTGC 2 cut(s) 757, 1200
BstC8I GCNNGC 2 cut(s) 1367, 1418
BstDEI CTNAG 8 cut(s) 452, 849, 1025, 1204, 1262, 1287, 1540, 1712
BstF5I GGATG 5 cut(s) 289, 699, 1360, 1450, 1510
BstFNI CGCG 2 cut(s) 43, 883
BstH2I RGCGCY 2 cut(s) 881, 1081
BstHHI GCGC 3 cut(s) 28, 880, 1080
BstMAI GTCTC 3 cut(s) 368, 502, 1543
BstMWI GCNNNNNNNGC 8 cut(s) 40, 49, 141, 757, 935, 1200, 1426, 1727
BstNI CCWGG 2 cut(s) 417, 791
BstNSI RCATGY 2 cut(s) 1067, 1369
BstSCI CCNGG 2 cut(s) 415, 789
BstSFI CTRYAG 2 cut(s) 354, 1722
BstUI CGCG 2 cut(s) 43, 883
BstV1I GCAGC 5 cut(s) 378, 635, 1015, 1270, 1714
BstX2I RGATCY 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 816
BstYI RGATCY 1 cut(s) 95
Bsu15I ATCGAT 1 cut(s) 645
BsuRI GGCC 4 cut(s) 440, 1239, 1416, 1742
BsuTUI ATCGAT 1 cut(s) 645
BtsCI GGATG 5 cut(s) 289, 699, 1360, 1450, 1510
BtsI GCAGTG 1 cut(s) 936
BtsIMutI CAGTG 2 cut(s) 449, 936
Cac8I GCNNGC 2 cut(s) 1367, 1418
CfoI GCGC 3 cut(s) 28, 880, 1080
Cfr13I GGNCC 2 cut(s) 1185, 1740
ClaI ATCGAT 1 cut(s) 645
Csp6I GTAC 7 cut(s) 276, 424, 433, 687, 1212, 1562, 1669
CviAII CATG 5 cut(s) 139, 959, 1064, 1349, 1366
CviQI GTAC 7 cut(s) 276, 424, 433, 687, 1212, 1562, 1669
DdeI CTNAG 8 cut(s) 452, 849, 1025, 1204, 1262, 1287, 1540, 1712
DraI TTTAAA 1 cut(s) 1330
DriI GACNNNNNGTC 1 cut(s) 417
EaeI YGGCCR 1 cut(s) 1414
Eam1104I CTCTTC 1 cut(s) 697
Eam1105I GACNNNNNGTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 697
EciI GGCGGA 1 cut(s) 1765
Eco31I GGTCTC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 1185
EcoRII CCWGG 2 cut(s) 415, 789
FaeI CATG 5 cut(s) 142, 962, 1067, 1352, 1369
FatI CATG 5 cut(s) 138, 958, 1063, 1348, 1365
FauI CCCGC 1 cut(s) 255
FbaI TGATCA 2 cut(s) 331, 1345
Fnu4HI GCNGC 8 cut(s) 50, 392, 481, 624, 881, 1004, 1284, 1728
FokI GGATG 5 cut(s) 276, 706, 1367, 1457, 1517
Fsp4HI GCNGC 8 cut(s) 50, 392, 481, 624, 881, 1004, 1284, 1728
FspBI CTAG 3 cut(s) 522, 663, 675
GlaI GCGC 3 cut(s) 27, 879, 1079
GluI GCNGC 8 cut(s) 50, 392, 481, 624, 881, 1004, 1284, 1728
GsaI CCCAGC 1 cut(s) 216
HaeII RGCGCY 2 cut(s) 881, 1081
HaeIII GGCC 4 cut(s) 440, 1239, 1416, 1742
HapII CCGG 1 cut(s) 65
HhaI GCGC 3 cut(s) 28, 880, 1080
Hin1II CATG 5 cut(s) 142, 962, 1067, 1352, 1369
Hin6I GCGC 3 cut(s) 26, 878, 1078
HinP1I GCGC 3 cut(s) 26, 878, 1078
HincII GTYRAC 1 cut(s) 952
HindII GTYRAC 1 cut(s) 952
HindIII AAGCTT 3 cut(s) 32, 155, 569
HinfI GANTC 5 cut(s) 164, 412, 485, 713, 1449
HpaII CCGG 1 cut(s) 65
HphI GGTGA 3 cut(s) 29, 977, 1163
Hpy166II GTNNAC 3 cut(s) 774, 952, 1061
Hpy188I TCNGA 5 cut(s) 186, 363, 657, 693, 718
Hpy188III TCNNGA 7 cut(s) 65, 161, 193, 905, 1012, 1115, 1791
Hpy8I GTNNAC 3 cut(s) 774, 952, 1061
HpyAV CCTTC 4 cut(s) 14, 962, 1156, 1469
HpyCH4III ACNGT 2 cut(s) 271, 1561
HpyCH4IV ACGT 1 cut(s) 973
HpyF10VI GCNNNNNNNGC 8 cut(s) 40, 49, 141, 757, 935, 1200, 1426, 1727
HpyF3I CTNAG 8 cut(s) 452, 849, 1025, 1204, 1262, 1287, 1540, 1712
HpySE526I ACGT 1 cut(s) 973
Hsp92II CATG 5 cut(s) 142, 962, 1067, 1352, 1369
HspAI GCGC 3 cut(s) 26, 878, 1078
Kpn2I TCCGGA 1 cut(s) 64
Ksp22I TGATCA 2 cut(s) 331, 1345
LmnI GCTCC 3 cut(s) 140, 259, 1165
Lsp1109I GCAGC 5 cut(s) 378, 635, 1015, 1270, 1714
LweI GCATC 4 cut(s) 298, 659, 788, 1495
MaeI CTAG 3 cut(s) 522, 663, 675
MaeII ACGT 1 cut(s) 973
MaeIII GTNAC 2 cut(s) 649, 1219
MbiI CCGCTC 1 cut(s) 262
MboII GAAGA 3 cut(s) 300, 714, 1124
MfeI CAATTG 2 cut(s) 1189, 1509
MflI RGATCY 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 1416
MluNI TGGCCA 1 cut(s) 1416
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 3 cut(s) 123, 528, 1230
Mox20I TGGCCA 1 cut(s) 1416
MroI TCCGGA 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 1453
MscI TGGCCA 1 cut(s) 1416
MseI TTAA 6 cut(s) 315, 341, 446, 911, 1329, 1440
MslI CAYNNNNRTG 6 cut(s) 44, 765, 963, 1056, 1353, 1699
Msp20I TGGCCA 1 cut(s) 1416
MspA1I CMGCKG 1 cut(s) 1420
MspCI CTTAAG 1 cut(s) 340
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 417, 791
MunI CAATTG 2 cut(s) 1189, 1509
Mva1269I GAATGC 3 cut(s) 51, 1259, 1328
MvaI CCWGG 2 cut(s) 417, 791
MvnI CGCG 2 cut(s) 43, 883
MwoI GCNNNNNNNGC 8 cut(s) 40, 49, 141, 757, 935, 1200, 1426, 1727
NlaIII CATG 5 cut(s) 142, 962, 1067, 1352, 1369
NlaIV GGNNCC 2 cut(s) 97, 136
NspI RCATGY 2 cut(s) 1067, 1369
PaeI GCATGC 1 cut(s) 1369
PciI ACATGT 1 cut(s) 1063
PctI GAATGC 3 cut(s) 51, 1259, 1328
PdmI GAANNNNTTC 1 cut(s) 1453
PfeI GAWTC 4 cut(s) 164, 485, 713, 1449
Pfl23II CGTACG 1 cut(s) 432
PflFI GACNNNGTC 1 cut(s) 1770
PkrI GCNGC 8 cut(s) 51, 393, 482, 625, 882, 1005, 1285, 1729
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PscI ACATGT 1 cut(s) 1063
PsiI TTATAA 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 415, 789
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 2 cut(s) 415, 789
PspLI CGTACG 1 cut(s) 432
PspN4I GGNNCC 2 cut(s) 97, 136
PspPI GGNCC 2 cut(s) 1185, 1740
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 95
PsyI GACNNNGTC 1 cut(s) 1770
RsaI GTAC 7 cut(s) 277, 425, 434, 688, 1213, 1563, 1670
RsaNI GTAC 7 cut(s) 276, 424, 433, 687, 1212, 1562, 1669
RseI CAYNNNNRTG 6 cut(s) 44, 765, 963, 1056, 1353, 1699
SaqAI TTAA 6 cut(s) 315, 341, 446, 911, 1329, 1440
SatI GCNGC 8 cut(s) 50, 392, 481, 624, 881, 1004, 1284, 1728
Sau96I GGNCC 2 cut(s) 1185, 1740
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 2 cut(s) 417, 791
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 4 cut(s) 298, 659, 788, 1495
SfcI CTRYAG 2 cut(s) 354, 1722
SinI GGWCC 1 cut(s) 1185
SmiMI CAYNNNNRTG 6 cut(s) 44, 765, 963, 1056, 1353, 1699
SmlI CTYRAG 4 cut(s) 221, 340, 869, 1583
SmoI CTYRAG 4 cut(s) 221, 340, 869, 1583
SphI GCATGC 1 cut(s) 1369
SsiI CCGC 6 cut(s) 49, 262, 480, 881, 1420, 1750
SspI AATATT 1 cut(s) 1373
SspMI CTAG 3 cut(s) 522, 663, 675
StyD4I CCNGG 2 cut(s) 415, 789
TaaI ACNGT 2 cut(s) 271, 1561
TaiI ACGT 1 cut(s) 976
TaqI TCGA 4 cut(s) 81, 129, 645, 1041
TaqII GACCGA 2 cut(s) 392, 1776
TatI WGTACW 1 cut(s) 423
TauI GCSGC 3 cut(s) 52, 483, 883
TfiI GAWTC 4 cut(s) 164, 485, 713, 1449
Tru1I TTAA 6 cut(s) 315, 341, 446, 911, 1329, 1440
Tru9I TTAA 6 cut(s) 315, 341, 446, 911, 1329, 1440
TscAI CASTG 2 cut(s) 456, 936
TseI GCWGC 5 cut(s) 391, 623, 1003, 1283, 1727
TspDTI ATGAA 7 cut(s) 1037, 1110, 1158, 1175, 1335, 1587, 1683
TspGWI ACGGA 3 cut(s) 20, 272, 315
TspRI CASTG 2 cut(s) 456, 936
Tth111I GACNNNGTC 1 cut(s) 1770
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 1185
XapI RAATTY 3 cut(s) 733, 986, 1332
XceI RCATGY 2 cut(s) 1067, 1369
XmnI GAANNNNTTC 1 cut(s) 1453
XspI CTAG 3 cut(s) 522, 663, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.