Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008403

Physical Location & Seq

Genomic Coordinates Reverse (-)

6327327 .. 6328680

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTTTTCCACAGTCAGACTCGATCCATACCTACTTCCTATTGTTCAAGGGAATATCCTTATTTCGTTCTTCCTTTCAATTTATTGCTGTTTCTCATGTGTGCTTGTGTGCCTGCCCTGCATACATGCATACATTTCATACTTATGTATTATTTAGTTTGTTTAGTTCATTTGTGTGGTGGTGTTCGATTTATAAACTGTTTTTCCATTGAAAGGTTCTCCTTAATTGACATCACGCTTTCATCACTTTCAAGCAGCCATTGGCAAAGATATTATCGATGTTACTCTGATTGCAAGGAGATAATAACATTCATGCTAAATTTGGGAATCGTAGAGTTTATAATATCTTATCAAGTTAGGGCCACTATATCCATCGGAAATAGGACTTATGTCCTTGTTACTCTAGTGAGTCTCGTCAATACTAATTTTCATTTCTTGGAAGGCACCCGGATGTGGAGAAGAGGAGCTGATTCAGACGGGTATGTAGCGAACTTTGTGGAAACTGAGCAGATTATGCACTTGAATGGGTTTACTTCATCATTTGTCCAGGTAAAATTGTATAGCTGTGCATGTATAATTATGTTATGGACTTTTGTTTACGTGGTTAGGGGGTCAATTCCGTTGCTTTGGGAACAAATTGTTGATTTAACATACAAGCCCAAGTTTGAAATTGTGCGACTTGAGGAAGCTGTGAGTTGGTGGTTACTTGTTTTTAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030258 GO:0030427 GO:0031520 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0034596 GO:0035618 GO:0035619 GO:0035838 GO:0040007 GO:0042175 GO:0042578 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050896 GO:0051286 GO:0052744 GO:0052866 GO:0055044 GO:0060560 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090404 GO:0090406 GO:0090558 GO:0090627 GO:0098590 GO:0098827 GO:0099402 GO:0120025 GO:0120038 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

241

Amino Acids

28.11

Weight (kDa)

7.99

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	127 - 229	7.8e-21	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51460 AT5G66020
fragaria_vesca	FvH4_1g10490 FvH4_1g10490 FvH4_1g10490
malus_domestica	MD02G1118500.v1.1 MD15G1232800.v1.1
prunus_persica	Prupe.7G181200_v2.0.a1 Prupe.7G181200_v2.0.a1 Prupe.7G181200_v2.0.a1
pyrus_communis	pycom02g09200 pycom15g20720
rosa_chinensis	RchiOBHm_Chr2g0097371
rosa_laevigata	RLG00000016721
rosa_multiflora	Rmu_sc0001060.1_g000009
rosa_roxburghii	Rroxscaffold_2G00144730
rosa_rugosa	Rorug02G0066100 Rorug02G0066200
rosa_samantha	Rh2AG112900 Rh2BG115700 Rh2CG117700 Rh2DG116900
rosa_wichuraiana	Rw2G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	194, 341
AccB1I	GGYRCC	1 cut(s)	443
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	213, 453
AgsI	TTSAA	6 cut(s)	48, 79, 212, 252, 523, 668
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	3 cut(s)	467, 564, 689
AluI	AGCT	3 cut(s)	467, 564, 689
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	548
BcnI	CCSGG	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	404
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	2 cut(s)	448, 548
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	2 cut(s)	448, 548
BoxI	GACNNNNGTC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	448
Bsa29I	ATCGAT	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	601
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 453
BseBI	CCWGG	1 cut(s)	548
BseCI	ATCGAT	1 cut(s)	277
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	213, 453
BseMII	CTCAG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	267
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	443
BshVI	ATCGAT	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	448
BslI	CCNNNNNNNGG	2 cut(s)	213, 453
BsmAI	GTCTC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	496
BspDI	ATCGAT	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	445
BspPI	GGATC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	443
BssMI	GATC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	2 cut(s)	14, 200
Bst6I	CTCTTC	1 cut(s)	454
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstBAI	YACGTR	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	504
BstF5I	GGATG	1 cut(s)	456
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 514
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	2 cut(s)	129, 573
BstPAI	GACNNNNGTC	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	446, 546
BstV1I	GCAGC	1 cut(s)	267
Bsu15I	ATCGAT	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	362
BsuTUI	ATCGAT	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	277
CviAII	CATG	4 cut(s)	97, 126, 313, 570
CviJI	RGCY	6 cut(s)	258, 362, 467, 564, 658, 689
CviKI_1	RGCY	6 cut(s)	258, 362, 467, 564, 658, 689
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
DraI	TTTAAA	1 cut(s)	715
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	546
EcoT22I	ATGCAT	1 cut(s)	131
FaeI	CATG	4 cut(s)	100, 129, 316, 573
FatI	CATG	4 cut(s)	96, 125, 312, 569
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	1 cut(s)	463
Fsp4HI	GCNGC	1 cut(s)	256
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	1 cut(s)	448
Hin1II	CATG	4 cut(s)	100, 129, 316, 573
HinfI	GANTC	4 cut(s)	19, 327, 409, 470
HpaII	CCGG	1 cut(s)	448
Hpy166II	GTNNAC	2 cut(s)	531, 598
Hpy188I	TCNGA	4 cut(s)	18, 289, 377, 475
Hpy8I	GTNNAC	2 cut(s)	531, 598
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	2 cut(s)	14, 200
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	5 cut(s)	121, 129, 294, 517, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 514
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	4 cut(s)	100, 129, 316, 573
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	464
LpnPI	CCDG	5 cut(s)	126, 131, 461, 533, 560
Lsp1109I	GCAGC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	3 cut(s)	281, 397, 702
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	2 cut(s)	62, 471
MluCI	AATT	9 cut(s)	79, 225, 319, 424, 554, 576, 615, 636, 669
MlyI	GAGTC	2 cut(s)	13, 418
MnlI	CCTC	2 cut(s)	455, 676
Mph1103I	ATGCAT	1 cut(s)	131
MseI	TTAA	3 cut(s)	224, 647, 714
MslI	CAYNNNNRTG	4 cut(s)	143, 174, 449, 522
MspI	CCGG	1 cut(s)	448
MspR9I	CCNGG	2 cut(s)	448, 548
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	2 cut(s)	118, 514
NciI	CCSGG	1 cut(s)	448
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	4 cut(s)	100, 129, 316, 573
NlaIV	GGNNCC	1 cut(s)	445
NsiI	ATGCAT	1 cut(s)	131
NspI	RCATGY	2 cut(s)	129, 573
PfeI	GAWTC	2 cut(s)	327, 470
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	2 cut(s)	13, 417
PpsI	GAGTC	2 cut(s)	13, 417
Ppu21I	YACGTR	1 cut(s)	601
PshAI	GACNNNNGTC	1 cut(s)	389
PsiI	TTATAA	2 cut(s)	194, 341
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	1 cut(s)	360
RseI	CAYNNNNRTG	4 cut(s)	143, 174, 449, 522
SaqAI	TTAA	3 cut(s)	224, 647, 714
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	2 cut(s)	13, 418
ScrFI	CCNGG	2 cut(s)	448, 548
SetI	ASST	7 cut(s)	34, 218, 469, 552, 566, 603, 691
SmiMI	CAYNNNNRTG	4 cut(s)	143, 174, 449, 522
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	9 cut(s)	79, 225, 319, 424, 554, 576, 615, 636, 669
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	2 cut(s)	446, 546
TaaI	ACNGT	2 cut(s)	14, 200
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	3 cut(s)	22, 187, 277
TasI	AATT	9 cut(s)	79, 225, 319, 424, 554, 576, 615, 636, 669
TfiI	GAWTC	2 cut(s)	327, 470
Tru1I	TTAA	3 cut(s)	224, 647, 714
Tru9I	TTAA	3 cut(s)	224, 647, 714
TseI	GCWGC	1 cut(s)	255
TspDTI	ATGAA	6 cut(s)	127, 158, 231, 301, 419, 525
TspGWI	ACGGA	1 cut(s)	609
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	2 cut(s)	129, 573
XspI	CTAG	1 cut(s)	404
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.