Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008403

Physical Location & Seq

Genomic Coordinates Reverse (-)

5173662 .. 5175334

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0066200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCGTGGCAGACTTATGTAGATGAACACTTGATGTGTGACATTGATGGCAATGGCCAGCATCTTGCTGCAGCGGCCATTGTTGGTCATGATGGCAGCCCCTGGGCCAAGAGTGCTAACTTTCCTCAGTTTAAGCCTGAGGAGATCACTGCTATCATGAAAGATTTCGATGAACCTGGAACCCTTGCTCCGACTGGCTTGCACCTCGGGGGAGTAAAGTACATGGTAATCCAGGGAGAGCCCGGTGCTGTTATCCGTGGGAAAAAGGGCTCTGGAGGCATCACTATAAAGAAAACTGGACAAGCACTAGTATTCGGAATCTATGAAGAACCAGTGACTCCAGGACAGTGCAACATGGTTGTTGAGAGGTTGGGAGATTACCTTGCTGATCAAGGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030258 GO:0030427 GO:0031520 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0034596 GO:0035618 GO:0035619 GO:0035838 GO:0040007 GO:0042175 GO:0042578 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050896 GO:0051286 GO:0052744 GO:0052866 GO:0055044 GO:0060560 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090404 GO:0090406 GO:0090558 GO:0090627 GO:0098590 GO:0098827 GO:0099402 GO:0120025 GO:0120038 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

133

Amino Acids

14.2

Weight (kDa)

5.04

Isoelectric Point (pI)

22.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	1 - 133	9.5e-45	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51460 AT5G66020
fragaria_vesca	FvH4_1g10490 FvH4_1g10490 FvH4_1g10490
malus_domestica	MD02G1118500.v1.1 MD15G1232800.v1.1
prunus_persica	Prupe.7G181200_v2.0.a1 Prupe.7G181200_v2.0.a1 Prupe.7G181200_v2.0.a1
pyrus_communis	pycom02g09200 pycom15g20720
rosa_chinensis	RchiOBHm_Chr2g0097371
rosa_laevigata	RLG00000016721
rosa_multiflora	Rmu_sc0001060.1_g000009
rosa_roxburghii	Rroxscaffold_2G00144730
rosa_rugosa	Rorug02G0066100 Rorug02G0066200
rosa_samantha	Rh2AG112900 Rh2BG115700 Rh2CG117700 Rh2DG116900
rosa_wichuraiana	Rw2G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	2 cut(s)	55, 75
AfaI	GTAC	1 cut(s)	221
AhlI	ACTAGT	1 cut(s)	307
AjnI	CCWGG	4 cut(s)	101, 175, 231, 340
AloI	GAACNNNNNNTCC	2 cut(s)	172, 204
AlwNI	CAGNNNCTG	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	4 cut(s)	55, 75, 105, 394
ApeKI	GCWGC	3 cut(s)	68, 71, 96
Asp700I	GAANNNNTTC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	243
AvaI	CYCGRG	1 cut(s)	206
AxyI	CCTNAGG	1 cut(s)	138
BalI	TGGCCA	1 cut(s)	57
BanII	GRGCYC	2 cut(s)	243, 272
BbvI	GCAGC	3 cut(s)	55, 83, 108
BccI	CCATC	2 cut(s)	41, 86
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	4 cut(s)	103, 177, 233, 342
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	243
BcuI	ACTAGT	1 cut(s)	307
BfaI	CTAG	2 cut(s)	308, 400
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	4 cut(s)	69, 72, 75, 97
BlsI	GCNGC	4 cut(s)	70, 73, 76, 98
Bme1390I	CCNGG	5 cut(s)	103, 177, 233, 243, 342
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	5 cut(s)	103, 177, 233, 243, 342
BmsI	GCATC	2 cut(s)	70, 288
BpmI	CTGGAG	2 cut(s)	294, 324
BpuMI	CCSGG	1 cut(s)	243
BsaJI	CCNNGG	5 cut(s)	101, 102, 205, 232, 256
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bse1I	ACTGG	3 cut(s)	199, 301, 332
Bse21I	CCTNAGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	58
BseBI	CCWGG	4 cut(s)	103, 177, 233, 342
BseDI	CCNNGG	5 cut(s)	101, 102, 205, 232, 256
BseMI	GCAATG	1 cut(s)	58
BseMII	CTCAG	2 cut(s)	129, 140
BseNI	ACTGG	3 cut(s)	199, 301, 332
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	3 cut(s)	55, 83, 108
BshFI	GGCC	4 cut(s)	57, 77, 107, 396
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	243
BsnI	GGCC	4 cut(s)	57, 77, 107, 396
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	243, 272
Bsp143I	GATC	2 cut(s)	144, 388
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	4 cut(s)	57, 77, 107, 396
BspCNI	CTCAG	2 cut(s)	130, 139
BspHI	TCATGA	2 cut(s)	88, 156
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	199, 301, 332
BssECI	CCNNGG	5 cut(s)	101, 102, 205, 232, 256
BssMI	GATC	2 cut(s)	144, 388
Bst2UI	CCWGG	4 cut(s)	103, 177, 233, 342
Bst4CI	ACNGT	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	59, 200
BstDEI	CTNAG	2 cut(s)	126, 138
BstDSI	CCRYGG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	147, 391
BstMBI	GATC	2 cut(s)	144, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 113, 276
BstNI	CCWGG	4 cut(s)	103, 177, 233, 342
BstSCI	CCNGG	5 cut(s)	101, 175, 231, 241, 340
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	3 cut(s)	55, 83, 108
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	4 cut(s)	57, 77, 107, 396
BtgI	CCRYGG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	3 cut(s)	147, 339, 353
Cac8I	GCNNGC	2 cut(s)	59, 200
CaiI	CAGNNNCTG	1 cut(s)	102
CciI	TCATGA	2 cut(s)	88, 156
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	4 cut(s)	89, 157, 223, 355
CviJI	RGCY	9 cut(s)	57, 77, 99, 107, 136, 198, 241, 270, 396
CviKI_1	RGCY	9 cut(s)	57, 77, 99, 107, 136, 198, 241, 270, 396
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	126, 138
DpnI	GATC	2 cut(s)	146, 390
DpnII	GATC	2 cut(s)	144, 388
EaeI	YGGCCR	2 cut(s)	55, 75
Eco147I	AGGCCT	1 cut(s)	396
Eco24I	GRGCYC	2 cut(s)	243, 272
Eco81I	CCTNAGG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	206
EcoRII	CCWGG	4 cut(s)	101, 175, 231, 340
EcoT38I	GRGCYC	2 cut(s)	243, 272
FaeI	CATG	4 cut(s)	92, 160, 226, 358
FaiI	YATR	7 cut(s)	18, 90, 158, 224, 287, 324, 356
FatI	CATG	4 cut(s)	88, 156, 222, 354
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	4 cut(s)	69, 72, 75, 97
FriOI	GRGCYC	2 cut(s)	243, 272
Fsp4HI	GCNGC	4 cut(s)	69, 72, 75, 97
FspBI	CTAG	2 cut(s)	308, 400
GluI	GCNGC	4 cut(s)	69, 72, 75, 97
GsuI	CTGGAG	2 cut(s)	294, 324
HaeIII	GGCC	4 cut(s)	57, 77, 107, 396
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	4 cut(s)	92, 160, 226, 358
HinfI	GANTC	2 cut(s)	318, 337
HpaII	CCGG	1 cut(s)	243
Hpy188I	TCNGA	2 cut(s)	192, 317
Hpy188III	TCNNGA	3 cut(s)	89, 157, 273
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4V	TGCA	3 cut(s)	71, 202, 351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 113, 276
HpyF3I	CTNAG	2 cut(s)	126, 138
Hsp92II	CATG	4 cut(s)	92, 160, 226, 358
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	144, 388
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	3 cut(s)	55, 83, 108
LweI	GCATC	2 cut(s)	70, 288
MaeI	CTAG	2 cut(s)	308, 400
MaeIII	GTNAC	2 cut(s)	38, 334
MalI	GATC	2 cut(s)	146, 390
MboI	GATC	2 cut(s)	144, 388
MboII	GAAGA	1 cut(s)	338
MhlI	GDGCHC	2 cut(s)	243, 272
MlsI	TGGCCA	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	5 cut(s)	133, 135, 215, 269, 360
Mox20I	TGGCCA	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	5 cut(s)	103, 177, 233, 243, 342
MvaI	CCWGG	4 cut(s)	103, 177, 233, 342
MwoI	GCNNNNNNNGC	3 cut(s)	74, 113, 276
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	2 cut(s)	144, 388
NlaIII	CATG	4 cut(s)	92, 160, 226, 358
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	38, 334
PagI	TCATGA	2 cut(s)	88, 156
PasI	CCCWGGG	1 cut(s)	102
PceI	AGGCCT	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	318
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	4 cut(s)	70, 73, 76, 98
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp6I	CCWGG	4 cut(s)	101, 175, 231, 340
PspGI	CCWGG	4 cut(s)	101, 175, 231, 340
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	102
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	4 cut(s)	69, 72, 75, 97
Sau3AI	GATC	2 cut(s)	144, 388
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	5 cut(s)	103, 177, 233, 243, 342
SduI	GDGCHC	2 cut(s)	243, 272
SetI	ASST	4 cut(s)	178, 207, 371, 384
SfaNI	GCATC	2 cut(s)	70, 288
SfcI	CTRYAG	1 cut(s)	69
SpeI	ACTAGT	1 cut(s)	307
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	308, 400
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	5 cut(s)	101, 175, 231, 241, 340
TaaI	ACNGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	168
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	3 cut(s)	154, 339, 353
TseFI	GTSAC	2 cut(s)	38, 334
TseI	GCWGC	3 cut(s)	68, 71, 96
Tsp45I	GTSAC	2 cut(s)	38, 334
TspDTI	ATGAA	4 cut(s)	39, 173, 186, 339
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	3 cut(s)	154, 339, 353
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	2 cut(s)	308, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.