Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008403

Physical Location & Seq

Genomic Coordinates Reverse (-)

5170875 .. 5172326

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0066100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCGTGGCAAACTTACGTCGATGACCACCTGATGTGCGAAATCGAAGGCAACCACCTCTCCGCCGCCGCCATCATCGGCCAAGACGGCAGCGTTTGGGCCCAGAGCGCCACCTTCCCTCAGTTGAAGCCTGAAGAAGTTACTGGCATTGTGAATGACTTTAATGAACCTGGAACACTTGCTCCAACTGGGTTGTATCTTGGAGGCACTAAGTACATGGTGATCCAAGGAGAGCCTGGAGCTGTCATTAGAGGGAAGAAGGGCCCTGGAGGTGTTACTGTGAAGAAGACTACTCTGGCATTGCTCATTGGGATCTATGATGAGCCAATGACTCCGGGACAATGCAACATGATTGTGGAGAGGCTTGGCGATTATCTGGTTGAGCAGGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030258 GO:0030427 GO:0031520 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0034596 GO:0035618 GO:0035619 GO:0035838 GO:0040007 GO:0042175 GO:0042578 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050896 GO:0051286 GO:0052744 GO:0052866 GO:0055044 GO:0060560 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090404 GO:0090406 GO:0090558 GO:0090627 GO:0098590 GO:0098827 GO:0099402 GO:0120025 GO:0120038 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

131

Amino Acids

14.02

Weight (kDa)

4.61

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	1 - 131	7.8e-44	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51460 AT5G66020
fragaria_vesca	FvH4_1g10490 FvH4_1g10490 FvH4_1g10490
malus_domestica	MD02G1118500.v1.1 MD15G1232800.v1.1
prunus_persica	Prupe.7G181200_v2.0.a1 Prupe.7G181200_v2.0.a1 Prupe.7G181200_v2.0.a1
pyrus_communis	pycom02g09200 pycom15g20720
rosa_chinensis	RchiOBHm_Chr2g0097371
rosa_laevigata	RLG00000016721
rosa_multiflora	Rmu_sc0001060.1_g000009
rosa_roxburghii	Rroxscaffold_2G00144730
rosa_rugosa	Rorug02G0066100 Rorug02G0066200
rosa_samantha	Rh2AG112900 Rh2BG115700 Rh2CG117700 Rh2DG116900
rosa_wichuraiana	Rw2G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	63, 66, 69
AclWI	GGATC	2 cut(s)	217, 320
AcoI	YGGCCR	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	3 cut(s)	169, 235, 265
AloI	GAACNNNNNNTCC	2 cut(s)	166, 198
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
AlwI	GGATC	2 cut(s)	217, 320
AoxI	GGCC	3 cut(s)	79, 99, 262
ApaI	GGGCCC	2 cut(s)	103, 266
ApeKI	GCWGC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	4 cut(s)	99, 100, 262, 263
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	232
BaeGI	GKGCMC	2 cut(s)	103, 266
BanII	GRGCYC	2 cut(s)	103, 266
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	3 cut(s)	171, 237, 267
BcnI	CCSGG	1 cut(s)	336
BfaI	CTAG	1 cut(s)	394
BfoI	RGCGCY	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	3 cut(s)	66, 69, 91
BlsI	GCNGC	3 cut(s)	67, 70, 92
Bme1390I	CCNGG	4 cut(s)	171, 237, 267, 336
BmgT120I	GGNCC	4 cut(s)	99, 100, 262, 263
BmiI	GGNNCC	2 cut(s)	101, 264
BmrFI	CCNGG	4 cut(s)	171, 237, 267, 336
BmrI	ACTGGG	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	2 cut(s)	258, 288
BpuMI	CCSGG	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	226, 265
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 166, 196
Bse1I	ACTGG	2 cut(s)	148, 193
Bse3DI	GCAATG	1 cut(s)	299
BseBI	CCWGG	3 cut(s)	171, 237, 267
BseDI	CCNNGG	2 cut(s)	226, 265
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	148, 193
BseSI	GKGCMC	2 cut(s)	103, 266
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	3 cut(s)	81, 101, 264
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	81, 101, 264
Bsp120I	GGGCCC	2 cut(s)	99, 262
Bsp1286I	GDGCHC	2 cut(s)	103, 266
Bsp143I	GATC	2 cut(s)	222, 312
BspACI	CCGC	3 cut(s)	63, 66, 69
BspANI	GGCC	3 cut(s)	81, 101, 264
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	101, 264
BspPI	GGATC	2 cut(s)	217, 320
BsrDI	GCAATG	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	148, 193
BssECI	CCNNGG	2 cut(s)	226, 265
BssMI	GATC	2 cut(s)	222, 312
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	3 cut(s)	171, 237, 267
Bst4CI	ACNGT	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	120, 210
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	225, 315
BstMBI	GATC	2 cut(s)	222, 312
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 107
BstNI	CCWGG	3 cut(s)	171, 237, 267
BstSCI	CCNGG	4 cut(s)	169, 235, 265, 334
BstSLI	GKGCMC	2 cut(s)	103, 266
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	3 cut(s)	81, 101, 264
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	4 cut(s)	99, 100, 262, 263
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	217, 349
CviJI	RGCY	8 cut(s)	81, 101, 130, 235, 242, 264, 325, 364
CviKI_1	RGCY	8 cut(s)	81, 101, 130, 235, 242, 264, 325, 364
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	120, 210
DpnI	GATC	2 cut(s)	224, 314
DpnII	GATC	2 cut(s)	222, 312
EaeI	YGGCCR	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	103, 266
Eco57I	CTGAAG	1 cut(s)	153
EcoO109I	RGGNCCY	2 cut(s)	262, 263
EcoRII	CCWGG	3 cut(s)	169, 235, 265
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	2 cut(s)	103, 266
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	220, 352
FaiI	YATR	3 cut(s)	218, 318, 350
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	2 cut(s)	216, 348
Fnu4HI	GCNGC	3 cut(s)	66, 69, 91
FriOI	GRGCYC	2 cut(s)	103, 266
Fsp4HI	GCNGC	3 cut(s)	66, 69, 91
FspBI	CTAG	1 cut(s)	394
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	3 cut(s)	66, 69, 91
GsuI	CTGGAG	2 cut(s)	258, 288
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	81, 101, 264
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	220, 352
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	41, 124, 253
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 107
HpyF3I	CTNAG	2 cut(s)	120, 210
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	220, 352
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	222, 312
LmnI	GCTCC	2 cut(s)	187, 239
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	394
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	139, 274
MalI	GATC	2 cut(s)	224, 314
MboI	GATC	2 cut(s)	222, 312
MboII	GAAGA	4 cut(s)	146, 268, 295, 298
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	103, 266
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	6 cut(s)	68, 129, 197, 245, 263, 354
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	4 cut(s)	171, 237, 267, 336
MvaI	CCWGG	3 cut(s)	171, 237, 267
MwoI	GCNNNNNNNGC	2 cut(s)	87, 107
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	2 cut(s)	222, 312
NlaIII	CATG	2 cut(s)	220, 352
NlaIV	GGNNCC	2 cut(s)	101, 264
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	67, 70, 92
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	3 cut(s)	169, 235, 265
PspGI	CCWGG	3 cut(s)	169, 235, 265
PspN4I	GGNNCC	2 cut(s)	101, 264
PspOMI	GGGCCC	2 cut(s)	99, 262
PspPI	GGNCC	4 cut(s)	99, 100, 262, 263
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	3 cut(s)	66, 69, 91
Sau3AI	GATC	2 cut(s)	222, 312
Sau96I	GGNCC	4 cut(s)	99, 100, 262, 263
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	4 cut(s)	171, 237, 267, 336
SduI	GDGCHC	2 cut(s)	103, 266
SetI	ASST	7 cut(s)	21, 33, 60, 116, 172, 244, 274
SmiMI	CAYNNNNRTG	1 cut(s)	353
SsiI	CCGC	3 cut(s)	63, 66, 69
SspMI	CTAG	1 cut(s)	394
StyD4I	CCNGG	4 cut(s)	169, 235, 265, 334
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	21, 45
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	68, 71
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XspI	CTAG	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.