Rw2G008840

phosphatase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
8838571 .. 8845858
7288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008840.1

Sequence Viewer

Length: 1548 bp
ATGGTTATAACGGAACGGCAATCTGTTGGTTCTTACTTGGGGCATCCTATCTATAAAGTTTCGTCATTTAAGGTTTTTCCCTGTGACCATTCTTTAAGGAACTCCCCTGCAGAACAGAAAAAGATGGAGACCGAGTTTTCTGCGCTGCTAAATATAGCAGAGAGGACTCCTGGTCTGTACTTCTCATACGAGGCCAATCTAACACTGAGTTCGCAACGATTGAATGATTTAGGCGGCGAATCTAAATCGCTTCCTCTTTGGAGACAGGCAGAGCCTAGATTTCTTTGGAACAATTATATGTTGGAGAACCTCATTGATAACAAGCTTGATCCATACCTACTTCCTATTGTTCAAGGCAGCTTTCATCATTTTCAAGCAGCCATTGGAAAAGATATTGTCGATGTTACTCTGATTGCTAGGAGATGCACTAGGCGAAATGGTACTCGGATGTGGAGAAGAGGAGCTGATCCTGATGGCTATGTAGCAAATTTTGTGGAAACAGAGCAGATTATGCACTTGAATGGGTTTACTGCATCATTTGTCCAGGTTAGGGGTTCAATTCCATTGCTTTGGGATCAAATTGTTGATTTGACATATAAGCCTAAGTTCGAAATTGTGCGACTTGAGGAAGCTCCGCGAGTGGCAGAGAGGCATTTTCTGGATTTAAGAAAAAAGTATGGGGCAGTGTTAGCTGTTGATCTTGTCAACACGCATGGAGGTGAAGGACGCTTGAGTGAAAAATTTGCAAATGCAATGCAGCATATCGTTAGTGATGATCTCAGATATTGGCACTTCGATTTTCATCATATCTGTGGACACGTCCATTTTGAGCGCCTCTCTATCCTTTATGAACAAATAGTAGATTTTCTCGACAGAAATGGGTATCTTTTGTTGAATGAAAATGGTGAGAAAATGAAGGAGCAATTAGGAGTTGTAAGGACCAATTGCATTGATTGCTTAGATCGTACAAATGTTACCCAGAGTATGATAGGCCGCAATATGTTGGAATGCCAACTTAGGAGGCTTGGCATTTTTGCTGCTGAAGAAACTATTAGCTCACACCCCAATTTAGATGAATGCTTTAAAATTTTGTGGGCTGATCATGGGGATGATGTAAGCATTCAATATTCTGGCACTCCTGCTTTGAAAGGGGATTTTGTAAGATGTGGCCAGCGGACAGTGCAAGGAATGGTCAAGGATGGGATCAATGCCCTTCTACGCTATTACTACAATAACTTCTGTGATGGAACTAAACAGGATGCAATTGACCTCCTGCAAGGACATTACATTGTCTCGGTCAGCAAAGATATGACAGCACCATCTCAAAAGAAAGGACTTGAGGCTGTTGCTTCATTTCCACTGGCTTTGTCATTCGTTTTGACTGGATTCTTTTTTGCGACTTTGTCATTGAGGCAAGTTAGGTACGATCTGCGGCACTTGTTCTTCTCATTTATGTGGGCTGGTCTAAGTGTGGCTATAGCTGCATTTGTGAGGGCCAATGGGCGGATTTTCTGCAATAGACCTCGTCTGCACAAGCCTCGGTCTTGA

Protein Analysis

515

Amino Acids

58.95

Weight (kDa)

8.24

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syja_N PF02383 1 - 271 9.9e-77 SacI homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AccII CGCG 1 cut(s) 637
AciI CCGC 6 cut(s) 234, 635, 994, 1174, 1432, 1504
AclWI GGATC 4 cut(s) 323, 461, 582, 1211
AcoI YGGCCR 1 cut(s) 1168
AcsI RAATTY 3 cut(s) 487, 740, 1086
AcuI CTGAAG 1 cut(s) 1062
AfaI GTAC 4 cut(s) 179, 442, 967, 1424
AfiI CCNNNNNNNGG 2 cut(s) 550, 1503
AflIII ACRYGT 1 cut(s) 817
AgsI TTSAA 8 cut(s) 223, 353, 374, 520, 558, 895, 1124, 1147
AhdI GACNNNNNGTC 1 cut(s) 171
AjiI CACGTC 1 cut(s) 820
AjnI CCWGG 2 cut(s) 169, 543
AluBI AGCT 7 cut(s) 325, 360, 464, 632, 692, 1056, 1481
AluI AGCT 7 cut(s) 325, 360, 464, 632, 692, 1056, 1481
Alw26I GTCTC 3 cut(s) 122, 256, 1297
AlwI GGATC 4 cut(s) 323, 461, 582, 1211
AoxI GGCC 4 cut(s) 192, 991, 1168, 1494
ApeKI GCWGC 6 cut(s) 145, 357, 377, 757, 1037, 1481
ApoI RAATTY 3 cut(s) 487, 740, 1086
AspLEI GCGC 2 cut(s) 145, 834
AspS9I GGNCC 2 cut(s) 939, 1494
AsuHPI GGTGA 2 cut(s) 731, 917
AsuII TTCGAA 1 cut(s) 609
AvaII GGWCC 1 cut(s) 939
BalI TGGCCA 1 cut(s) 1170
BbvI GCAGC 6 cut(s) 132, 369, 389, 769, 1024, 1468
BccI CCATC 5 cut(s) 118, 467, 1193, 1238, 1327
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 3 cut(s) 122, 156, 1520
BciT130I CCWGG 2 cut(s) 171, 545
BclI TGATCA 1 cut(s) 1099
BcoDI GTCTC 3 cut(s) 122, 256, 1297
BfaI CTAG 3 cut(s) 276, 417, 429
BfmI CTRYAG 2 cut(s) 108, 1476
BfoI RGCGCY 1 cut(s) 835
BisI GCNGC 9 cut(s) 146, 235, 358, 378, 758, 994, 1038, 1433, 1482
BlsI GCNGC 9 cut(s) 147, 236, 359, 379, 759, 995, 1039, 1434, 1483
Bme1390I CCNGG 2 cut(s) 171, 545
Bme18I GGWCC 1 cut(s) 939
BmeRI GACNNNNNGTC 1 cut(s) 171
BmgBI CACGTC 1 cut(s) 820
BmgT120I GGNCC 2 cut(s) 939, 1494
BmrFI CCNGG 2 cut(s) 171, 545
BmsI GCATC 4 cut(s) 52, 413, 542, 1249
BplI GAGNNNNNCTC 2 cut(s) 821, 853
Bpu14I TTCGAA 1 cut(s) 609
BpuEI CTTGAG 3 cut(s) 644, 751, 1358
BsaBI GATNNNNATC 1 cut(s) 801
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 1538
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 2 cut(s) 550, 1503
Bse1I ACTGG 2 cut(s) 1365, 1387
Bse3DI GCAATG 2 cut(s) 563, 759
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 2 cut(s) 171, 545
BseDI CCNNGG 1 cut(s) 1538
BseGI GGATG 5 cut(s) 43, 453, 1114, 1204, 1264
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 2 cut(s) 550, 1503
BseMI GCAATG 2 cut(s) 563, 759
BseMII CTCAG 2 cut(s) 197, 793
BseNI ACTGG 2 cut(s) 1365, 1387
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 6 cut(s) 132, 369, 389, 769, 1024, 1468
BsgI GTGCAG 1 cut(s) 1514
Bsh1236I CGCG 1 cut(s) 637
BshFI GGCC 4 cut(s) 194, 993, 1170, 1496
BslI CCNNNNNNNGG 2 cut(s) 550, 1503
BsmAI GTCTC 3 cut(s) 122, 256, 1297
BsmI GAATGC 3 cut(s) 1013, 1082, 1119
BsnI GGCC 4 cut(s) 194, 993, 1170, 1496
Bso31I GGTCTC 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 609
Bsp143I GATC 9 cut(s) 328, 466, 574, 697, 775, 961, 1099, 1203, 1426
BspACI CCGC 6 cut(s) 234, 635, 994, 1174, 1432, 1504
BspANI GGCC 4 cut(s) 194, 993, 1170, 1496
BspCNI CTCAG 2 cut(s) 198, 792
BspFNI CGCG 1 cut(s) 637
BspMAI CTGCAG 1 cut(s) 112
BspPI GGATC 4 cut(s) 323, 461, 582, 1211
BspT104I TTCGAA 1 cut(s) 609
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 2 cut(s) 563, 759
BsrI ACTGG 2 cut(s) 1365, 1387
BssECI CCNNGG 1 cut(s) 1538
BssMI GATC 9 cut(s) 328, 466, 574, 697, 775, 961, 1099, 1203, 1426
Bst2UI CCWGG 2 cut(s) 171, 545
Bst4CI ACNGT 1 cut(s) 1180
Bst6I CTCTTC 1 cut(s) 451
BstAPI GCANNNNNTGC 2 cut(s) 511, 954
BstBI TTCGAA 1 cut(s) 609
BstC8I GCNNGC 1 cut(s) 1172
BstDEI CTNAG 6 cut(s) 206, 603, 779, 958, 1016, 1466
BstF5I GGATG 5 cut(s) 43, 453, 1114, 1204, 1264
BstFNI CGCG 1 cut(s) 637
BstH2I RGCGCY 1 cut(s) 835
BstHHI GCGC 2 cut(s) 145, 834
BstKTI GATC 9 cut(s) 331, 469, 577, 700, 778, 964, 1102, 1206, 1429
BstMAI GTCTC 3 cut(s) 122, 256, 1297
BstMBI GATC 9 cut(s) 328, 466, 574, 697, 775, 961, 1099, 1203, 1426
BstMWI GCNNNNNNNGC 5 cut(s) 511, 689, 954, 1180, 1481
BstNI CCWGG 2 cut(s) 171, 545
BstSCI CCNGG 2 cut(s) 169, 543
BstSFI CTRYAG 2 cut(s) 108, 1476
BstUI CGCG 1 cut(s) 637
BstV1I GCAGC 6 cut(s) 132, 369, 389, 769, 1024, 1468
BstXI CCANNNNNNTGG 1 cut(s) 570
BsuRI GGCC 4 cut(s) 194, 993, 1170, 1496
BtrI CACGTC 1 cut(s) 820
BtsCI GGATG 5 cut(s) 43, 453, 1114, 1204, 1264
BtsI GCAGTG 1 cut(s) 690
BtsIMutI CAGTG 4 cut(s) 203, 690, 1185, 1358
Cac8I GCNNGC 1 cut(s) 1172
CfoI GCGC 2 cut(s) 145, 834
Cfr13I GGNCC 2 cut(s) 939, 1494
CseI GACGC 1 cut(s) 735
Csp6I GTAC 4 cut(s) 178, 441, 966, 1423
CspCI CAANNNNNGTGG 4 cut(s) 474, 509, 1347, 1382
CviAII CATG 2 cut(s) 713, 1103
CviQI GTAC 4 cut(s) 178, 441, 966, 1423
DdeI CTNAG 6 cut(s) 206, 603, 779, 958, 1016, 1466
DpnI GATC 9 cut(s) 330, 468, 576, 699, 777, 963, 1101, 1205, 1428
DpnII GATC 9 cut(s) 328, 466, 574, 697, 775, 961, 1099, 1203, 1426
DraI TTTAAA 1 cut(s) 1084
DriI GACNNNNNGTC 1 cut(s) 171
EaeI YGGCCR 1 cut(s) 1168
Eam1104I CTCTTC 1 cut(s) 451
Eam1105I GACNNNNNGTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 451
EciI GGCGGA 1 cut(s) 1519
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 939
Eco57I CTGAAG 1 cut(s) 1062
EcoRII CCWGG 2 cut(s) 169, 543
FaeI CATG 2 cut(s) 716, 1106
FatI CATG 2 cut(s) 712, 1102
FbaI TGATCA 1 cut(s) 1099
Fnu4HI GCNGC 9 cut(s) 146, 235, 358, 378, 758, 994, 1038, 1433, 1482
FokI GGATG 5 cut(s) 30, 460, 1121, 1211, 1271
Fsp4HI GCNGC 9 cut(s) 146, 235, 358, 378, 758, 994, 1038, 1433, 1482
FspBI CTAG 3 cut(s) 276, 417, 429
GlaI GCGC 2 cut(s) 144, 833
GluI GCNGC 9 cut(s) 146, 235, 358, 378, 758, 994, 1038, 1433, 1482
HaeII RGCGCY 1 cut(s) 835
HaeIII GGCC 4 cut(s) 194, 993, 1170, 1496
HgaI GACGC 1 cut(s) 735
HhaI GCGC 2 cut(s) 145, 834
Hin1II CATG 2 cut(s) 716, 1106
Hin6I GCGC 2 cut(s) 143, 832
HinP1I GCGC 2 cut(s) 143, 832
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 3 cut(s) 166, 239, 1386
HphI GGTGA 2 cut(s) 731, 917
Hpy166II GTNNAC 3 cut(s) 528, 706, 815
Hpy188I TCNGA 3 cut(s) 411, 447, 782
Hpy188III TCNNGA 4 cut(s) 470, 659, 869, 1545
Hpy8I GTNNAC 3 cut(s) 528, 706, 815
HpyAV CCTTC 3 cut(s) 716, 910, 1223
HpyCH4III ACNGT 1 cut(s) 1180
HpyCH4IV ACGT 1 cut(s) 819
HpyF10VI GCNNNNNNNGC 5 cut(s) 511, 689, 954, 1180, 1481
HpyF3I CTNAG 6 cut(s) 206, 603, 779, 958, 1016, 1466
HpySE526I ACGT 1 cut(s) 819
Hsp92II CATG 2 cut(s) 716, 1106
HspAI GCGC 2 cut(s) 143, 832
Ksp22I TGATCA 1 cut(s) 1099
Kzo9I GATC 9 cut(s) 328, 466, 574, 697, 775, 961, 1099, 1203, 1426
LmnI GCTCC 3 cut(s) 461, 637, 919
Lsp1109I GCAGC 6 cut(s) 132, 369, 389, 769, 1024, 1468
LweI GCATC 4 cut(s) 52, 413, 542, 1249
MaeI CTAG 3 cut(s) 276, 417, 429
MaeII ACGT 1 cut(s) 819
MaeIII GTNAC 3 cut(s) 83, 403, 973
MalI GATC 9 cut(s) 330, 468, 576, 699, 777, 963, 1101, 1205, 1428
MboI GATC 9 cut(s) 328, 466, 574, 697, 775, 961, 1099, 1203, 1426
MboII GAAGA 3 cut(s) 468, 1055, 1435
MfeI CAATTG 2 cut(s) 943, 1263
MlsI TGGCCA 1 cut(s) 1170
MluNI TGGCCA 1 cut(s) 1170
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 2 cut(s) 282, 984
Mox20I TGGCCA 1 cut(s) 1170
MscI TGGCCA 1 cut(s) 1170
MseI TTAA 4 cut(s) 69, 95, 665, 1083
MslI CAYNNNNRTG 5 cut(s) 519, 717, 810, 1107, 1453
Msp20I TGGCCA 1 cut(s) 1170
MspA1I CMGCKG 1 cut(s) 1174
MspR9I CCNGG 2 cut(s) 171, 545
MunI CAATTG 2 cut(s) 943, 1263
Mva1269I GAATGC 3 cut(s) 1013, 1082, 1119
MvaI CCWGG 2 cut(s) 171, 545
MvnI CGCG 1 cut(s) 637
MwoI GCNNNNNNNGC 5 cut(s) 511, 689, 954, 1180, 1481
NdeII GATC 9 cut(s) 328, 466, 574, 697, 775, 961, 1099, 1203, 1426
NlaIII CATG 2 cut(s) 716, 1106
NmuCI GTSAC 1 cut(s) 83
NspV TTCGAA 1 cut(s) 609
PctI GAATGC 3 cut(s) 1013, 1082, 1119
PfeI GAWTC 2 cut(s) 239, 1386
PflFI GACNNNGTC 2 cut(s) 1402, 1524
PkrI GCNGC 9 cut(s) 147, 236, 359, 379, 759, 995, 1039, 1434, 1483
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PsiI TTATAA 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 169, 543
PspGI CCWGG 2 cut(s) 169, 543
PspPI GGNCC 2 cut(s) 939, 1494
PstI CTGCAG 1 cut(s) 112
PsyI GACNNNGTC 2 cut(s) 1402, 1524
RsaI GTAC 4 cut(s) 179, 442, 967, 1424
RsaNI GTAC 4 cut(s) 178, 441, 966, 1423
RseI CAYNNNNRTG 5 cut(s) 519, 717, 810, 1107, 1453
SaqAI TTAA 4 cut(s) 69, 95, 665, 1083
SatI GCNGC 9 cut(s) 146, 235, 358, 378, 758, 994, 1038, 1433, 1482
Sau3AI GATC 9 cut(s) 328, 466, 574, 697, 775, 961, 1099, 1203, 1426
Sau96I GGNCC 2 cut(s) 939, 1494
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 2 cut(s) 171, 545
SfaNI GCATC 4 cut(s) 52, 413, 542, 1249
SfcI CTRYAG 2 cut(s) 108, 1476
SfuI TTCGAA 1 cut(s) 609
SinI GGWCC 1 cut(s) 939
SmiMI CAYNNNNRTG 5 cut(s) 519, 717, 810, 1107, 1453
SmlI CTYRAG 3 cut(s) 623, 730, 1337
SmoI CTYRAG 3 cut(s) 623, 730, 1337
SsiI CCGC 6 cut(s) 234, 635, 994, 1174, 1432, 1504
SspI AATATT 1 cut(s) 1127
SspMI CTAG 3 cut(s) 276, 417, 429
StyD4I CCNGG 2 cut(s) 169, 543
TaaI ACNGT 1 cut(s) 1180
TaiI ACGT 1 cut(s) 822
TaqI TCGA 4 cut(s) 399, 609, 795, 870
TaqII GACCGA 3 cut(s) 146, 1285, 1530
TatI WGTACW 1 cut(s) 177
TauI GCSGC 3 cut(s) 237, 996, 1435
TfiI GAWTC 2 cut(s) 239, 1386
Tru1I TTAA 4 cut(s) 69, 95, 665, 1083
Tru9I TTAA 4 cut(s) 69, 95, 665, 1083
TscAI CASTG 4 cut(s) 210, 690, 1185, 1365
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 6 cut(s) 145, 357, 377, 757, 1037, 1481
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 7 cut(s) 353, 791, 864, 912, 929, 1089, 1341
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 4 cut(s) 210, 690, 1185, 1365
Tth111I GACNNNGTC 2 cut(s) 1402, 1524
VpaK11BI GGWCC 1 cut(s) 939
XapI RAATTY 3 cut(s) 487, 740, 1086
XspI CTAG 3 cut(s) 276, 417, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.